Wall clock time and date at job start Mon Mar 30 2020 00:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99912 * 2 1 4 4 H 1.48502 * 109.47332 * 269.99858 * 3 2 1 5 5 H 1.48501 * 109.47158 * 30.00367 * 3 2 1 6 6 H 1.48501 * 109.46939 * 150.00110 * 3 2 1 7 7 C 1.37875 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99305 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00165 * 179.97438 * 7 2 1 10 10 C 1.53008 * 109.47046 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46898 * 179.97438 * 10 9 7 12 12 O 1.20821 * 120.00554 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99866 * 180.02562 * 11 10 9 14 14 C 1.45193 * 117.00178 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47235 * 179.97438 * 14 13 11 16 16 C 1.38425 * 120.02136 * 89.99931 * 15 14 13 17 17 F 1.35101 * 120.01402 * 359.70506 * 16 15 14 18 18 C 1.38476 * 119.97328 * 179.97438 * 16 15 14 19 19 C 1.38207 * 120.02410 * 0.02562 * 18 16 15 20 20 C 1.38207 * 120.05360 * 359.97438 * 19 18 16 21 21 C 1.38412 * 120.02814 * 269.97564 * 15 14 13 22 22 F 1.35096 * 120.01191 * 0.02562 * 21 15 14 23 23 H 0.97008 * 119.99740 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47499 * 60.00274 * 9 7 2 25 25 H 1.08996 * 109.47566 * 300.00048 * 9 7 2 26 26 H 1.08999 * 109.46798 * 60.00303 * 10 9 7 27 27 H 1.08991 * 109.47044 * 299.99934 * 10 9 7 28 28 H 1.09008 * 109.47161 * 59.99893 * 14 13 11 29 29 H 1.09006 * 109.47296 * 299.99794 * 14 13 11 30 30 H 1.08001 * 119.98752 * 179.97438 * 18 16 15 31 31 H 1.08000 * 119.97200 * 180.02562 * 19 18 16 32 32 H 1.07995 * 119.99247 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0014 11 6 5.5285 -2.6365 0.0001 12 8 6.1327 -1.5902 -0.0012 13 8 6.1997 -3.7990 0.0006 14 6 7.6496 -3.7230 -0.0001 15 6 8.2256 -5.1156 0.0011 16 6 8.4899 -5.7569 -1.1969 17 9 8.2259 -5.1369 -2.3678 18 6 9.0196 -7.0363 -1.1946 19 6 9.2841 -7.6731 0.0032 20 6 9.0207 -7.0339 1.1999 21 6 8.4913 -5.7542 1.2000 22 9 8.2339 -5.1296 2.3699 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6796 0.8895 25 1 3.8745 -0.6808 -0.8905 26 1 3.6578 -3.1513 -0.8879 27 1 3.6585 -3.1493 0.8920 28 1 7.9860 -3.1903 0.8895 29 1 7.9853 -3.1914 -0.8906 30 1 9.2255 -7.5370 -2.1291 31 1 9.6976 -8.6708 0.0040 32 1 9.2273 -7.5326 2.1352 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618162.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:49 Heat of formation + Delta-G solvation = -179.528930 kcal Electronic energy + Delta-G solvation = -19654.504780 eV Core-core repulsion = 16022.232297 eV Total energy + Delta-G solvation = -3632.272483 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.16264 -50.15103 -41.64145 -39.88162 -37.81305 -35.67325 -33.69218 -33.20560 -31.35799 -28.93018 -27.43080 -23.96580 -23.95000 -22.88199 -21.54583 -19.43823 -19.28086 -18.64803 -18.51646 -17.62887 -17.49680 -17.07943 -16.70010 -16.43877 -16.43135 -16.25576 -15.53491 -15.37743 -14.90959 -14.71280 -14.11721 -14.02118 -13.82308 -13.39202 -13.06308 -12.98378 -12.89107 -12.45225 -12.27274 -12.06837 -11.91872 -11.81765 -11.56971 -11.45195 -10.80726 -10.14496 -9.82637 -8.33686 -6.38175 -0.28430 -0.09448 1.09937 1.33152 1.35067 1.49008 1.61496 2.33061 2.37453 2.76140 3.01504 3.20095 3.28447 3.45697 3.72827 3.87751 4.09185 4.14990 4.18782 4.29733 4.33605 4.68002 4.73239 4.77986 4.94944 5.00591 5.14787 5.17579 5.26492 5.31984 5.55341 5.68892 6.19014 6.61788 6.71317 7.26978 8.81859 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034529 B = 0.003668 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.725484 B = 7631.918853 C = 7814.220849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.939 3.061 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.002 3.998 10 C -0.090 4.090 11 C 0.468 3.532 12 O -0.538 6.538 13 O -0.354 6.354 14 C 0.102 3.898 15 C -0.191 4.191 16 C 0.130 3.870 17 F -0.139 7.139 18 C -0.157 4.157 19 C -0.033 4.033 20 C -0.157 4.157 21 C 0.130 3.870 22 F -0.139 7.139 23 H 0.269 0.731 24 H 0.018 0.982 25 H 0.017 0.983 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.174 0.826 31 H 0.193 0.807 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.458 -19.014 0.003 30.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.183 4.183 3 Si 0.763 3.237 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.571 4.571 8 H 0.070 0.930 9 C -0.036 4.036 10 C -0.128 4.128 11 C 0.314 3.686 12 O -0.428 6.428 13 O -0.271 6.271 14 C 0.029 3.971 15 C -0.193 4.193 16 C 0.111 3.889 17 F -0.118 7.118 18 C -0.176 4.176 19 C -0.051 4.051 20 C -0.176 4.176 21 C 0.111 3.889 22 F -0.118 7.118 23 H 0.078 0.922 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.191 0.809 31 H 0.210 0.790 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 23.500 -18.548 0.005 29.937 hybrid contribution -0.221 1.626 -0.017 1.642 sum 23.279 -16.921 -0.012 28.779 Atomic orbital electron populations 1.70019 1.07826 1.28260 1.52029 1.25796 0.95524 1.02893 0.94045 0.85820 0.79288 0.79309 0.79272 1.19198 1.20243 1.18347 1.21314 0.90756 0.93992 1.51008 0.92999 1.19332 0.94522 0.92513 0.97185 1.21374 0.83927 1.00946 1.06504 1.24473 0.92489 0.80956 0.70716 1.90607 1.71137 1.34092 1.46927 1.86596 1.21482 1.34957 1.84066 1.21584 0.77232 0.94341 1.03929 1.19536 1.08863 0.97635 0.93284 1.17587 0.99264 0.92560 0.79516 1.91522 1.91673 1.82902 1.45677 1.21649 1.01319 0.91991 1.02594 1.21485 0.93578 1.01129 0.88887 1.21648 1.01306 0.91994 1.02607 1.17586 0.99298 0.92514 0.79532 1.91520 1.91805 1.82682 1.45773 0.92217 0.96380 0.96491 0.86713 0.86724 0.90016 0.89986 0.80868 0.78995 0.80871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16 2 C 0.02 0.92 5.47 84.65 0.46 1.38 16 3 Si 0.94 46.28 27.47 68.60 1.88 48.16 16 4 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.26 -12.60 6.54 99.48 0.65 -11.94 16 7 C -0.53 -30.80 9.66 25.60 0.25 -30.56 16 8 H 0.05 3.17 7.99 -2.91 -0.02 3.14 16 9 C 0.00 0.10 3.33 29.85 0.10 0.20 16 10 C -0.09 -3.61 5.75 29.85 0.17 -3.44 16 11 C 0.47 18.32 7.96 71.24 0.57 18.89 16 12 O -0.54 -23.89 15.73 21.98 0.35 -23.55 16 13 O -0.35 -12.14 10.20 -51.44 -0.52 -12.67 16 14 C 0.10 3.02 5.23 71.24 0.37 3.39 16 15 C -0.19 -4.50 5.53 -19.78 -0.11 -4.61 16 16 C 0.13 2.61 7.24 22.37 0.16 2.78 16 17 F -0.14 -3.34 16.48 44.97 0.74 -2.60 16 18 C -0.16 -1.76 10.03 22.32 0.22 -1.54 16 19 C -0.03 -0.23 10.04 22.25 0.22 -0.01 16 20 C -0.16 -1.76 10.03 22.32 0.22 -1.54 16 21 C 0.13 2.62 7.24 22.37 0.16 2.78 16 22 F -0.14 -3.35 16.48 44.97 0.74 -2.60 16 23 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 24 H 0.02 0.92 7.16 -2.38 -0.02 0.90 16 25 H 0.02 0.85 7.53 -2.39 -0.02 0.83 16 26 H 0.11 4.23 8.14 -2.39 -0.02 4.22 16 27 H 0.11 4.24 8.14 -2.39 -0.02 4.22 16 28 H 0.08 2.42 7.63 -2.38 -0.02 2.40 16 29 H 0.08 2.42 7.64 -2.38 -0.02 2.40 16 30 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 31 H 0.19 -0.36 8.06 -2.91 -0.02 -0.38 16 32 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -73.30 295.29 7.38 -65.92 By element: Atomic # 1 Polarization: -2.90 SS G_CDS: 1.09 Total: -1.81 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 2.81 Total: -12.26 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.30 Total: -58.59 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.18 Total: -36.21 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 1.48 Total: -5.20 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.88 Total: 48.16 kcal Total: -73.30 7.38 -65.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618162.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.610 kcal (2) G-P(sol) polarization free energy of solvation -73.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds