Wall clock time and date at job start Mon Mar 30 2020 00:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38196 * 119.99583 * 2 1 4 4 C 1.38375 * 120.05552 * 180.02562 * 3 2 1 5 5 F 1.35098 * 119.97717 * 179.97438 * 4 3 2 6 6 C 1.38698 * 120.04021 * 0.27936 * 4 3 2 7 7 F 1.35102 * 120.00711 * 179.69727 * 6 4 3 8 8 C 1.38312 * 119.98650 * 359.44299 * 6 4 3 9 9 C 1.38692 * 119.98929 * 180.02562 * 2 1 3 10 10 O 1.35956 * 120.02530 * 359.95533 * 9 2 1 11 11 C 1.34250 * 116.99721 * 81.86462 * 10 9 2 12 12 O 1.20828 * 120.00033 * 5.55746 * 11 10 9 13 13 C 1.50702 * 119.99997 * 185.54558 * 11 10 9 14 14 C 1.52996 * 109.47141 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47154 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00154 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00097 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00253 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00187 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46790 * 89.99956 * 19 17 15 21 21 H 1.48496 * 109.47123 * 210.00379 * 19 17 15 22 22 H 1.48499 * 109.47138 * 330.00457 * 19 17 15 23 23 H 1.08999 * 109.47089 * 90.00027 * 1 2 3 24 24 H 1.09001 * 109.47228 * 210.00285 * 1 2 3 25 25 H 1.09000 * 109.47063 * 330.00180 * 1 2 3 26 26 H 1.08000 * 119.96962 * 0.04311 * 3 2 1 27 27 H 1.07992 * 120.03104 * 180.29756 * 8 6 4 28 28 H 1.08993 * 109.47131 * 300.00575 * 13 11 10 29 29 H 1.09005 * 109.46633 * 60.00884 * 13 11 10 30 30 H 1.09001 * 109.47698 * 300.00823 * 14 13 11 31 31 H 1.09010 * 109.47188 * 60.00697 * 14 13 11 32 32 H 0.96998 * 120.00496 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1969 0.0000 4 6 3.5817 1.1983 -0.0005 5 9 4.2555 2.3693 -0.0011 6 6 4.2773 -0.0016 -0.0069 7 9 5.6283 0.0006 -0.0136 8 6 3.5876 -1.2005 -0.0011 9 6 2.2003 -1.2012 -0.0005 10 8 1.5208 -2.3788 -0.0001 11 6 1.0688 -2.8220 -1.1840 12 8 1.3578 -2.2343 -2.1995 13 6 0.2012 -4.0526 -1.2466 14 6 -0.1732 -4.3392 -2.7021 15 6 -1.0414 -5.5695 -2.7645 16 1 -1.3005 -6.0942 -1.8569 17 6 -1.5048 -6.0252 -3.9805 18 7 -2.2629 -7.0986 -4.0350 19 14 -1.0572 -5.1173 -5.5505 20 1 0.2035 -5.6751 -6.1025 21 1 -2.1480 -5.2805 -6.5448 22 1 -0.8712 -3.6745 -5.2521 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6574 2.1318 0.0007 27 1 4.1284 -2.1352 -0.0012 28 1 0.7468 -4.9030 -0.8379 29 1 -0.7051 -3.8882 -0.6636 30 1 -0.7187 -3.4888 -3.1112 31 1 0.7332 -4.5039 -3.2848 32 1 -2.5886 -7.4194 -4.8904 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813098231.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:59 Heat of formation + Delta-G solvation = -152.921550 kcal Electronic energy + Delta-G solvation = -19911.615551 eV Core-core repulsion = 16280.496850 eV Total energy + Delta-G solvation = -3631.118701 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.72377 -48.79720 -41.40744 -38.82017 -36.67999 -33.75769 -32.84301 -31.61502 -30.42415 -27.37310 -26.48022 -23.90594 -22.74258 -21.57542 -20.14284 -18.54030 -18.06910 -17.70003 -17.37983 -16.59116 -16.36118 -15.91175 -15.67171 -15.20572 -14.70016 -14.29850 -14.24718 -14.18058 -13.81631 -13.48496 -13.15657 -12.70581 -12.68396 -12.23709 -11.88382 -11.76944 -11.55991 -11.13759 -11.05362 -10.50077 -10.32664 -10.17784 -9.85457 -9.35853 -9.32818 -8.75886 -8.63314 -6.14629 -4.15576 0.43844 0.61474 2.34546 2.54274 3.18108 3.28656 3.36273 3.43646 3.50053 3.98949 4.21122 4.38956 4.39079 4.59670 4.77667 5.16257 5.19870 5.34450 5.39794 5.41690 5.47701 5.55407 5.81689 5.83579 5.88994 5.95436 6.20465 6.42874 6.60515 7.11050 7.17659 7.60665 7.97816 8.37511 8.86979 9.46550 10.97756 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032276 B = 0.003972 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.298728 B = 7046.911926 C = 7144.235307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.068 4.068 3 C -0.115 4.115 4 C 0.070 3.930 5 F -0.127 7.127 6 C 0.076 3.924 7 F -0.125 7.125 8 C -0.125 4.125 9 C 0.112 3.888 10 O -0.296 6.296 11 C 0.456 3.544 12 O -0.487 6.487 13 C -0.092 4.092 14 C -0.002 4.002 15 C -0.530 4.530 16 H 0.077 0.923 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.876 3.124 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.262 1.262 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.154 0.846 27 H 0.155 0.845 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.027 0.973 31 H 0.022 0.978 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.778 15.658 10.566 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.069 4.069 3 C -0.134 4.134 4 C 0.050 3.950 5 F -0.105 7.105 6 C 0.055 3.945 7 F -0.103 7.103 8 C -0.144 4.144 9 C 0.070 3.930 10 O -0.213 6.213 11 C 0.300 3.700 12 O -0.371 6.371 13 C -0.129 4.129 14 C -0.040 4.040 15 C -0.568 4.568 16 H 0.095 0.905 17 C -0.129 4.129 18 N -0.536 5.536 19 Si 0.703 3.297 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.186 1.186 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.171 0.829 27 H 0.173 0.827 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.859 15.765 10.098 20.712 hybrid contribution 0.753 0.615 -0.917 1.337 sum 9.612 16.380 9.181 21.095 Atomic orbital electron populations 1.20867 0.89017 1.04167 1.03815 1.20045 0.97812 0.91020 0.97983 1.20798 0.90994 0.99411 1.02148 1.17620 0.90483 0.80348 1.06542 1.91534 1.80138 1.44873 1.93984 1.17260 0.77612 0.92720 1.06883 1.91546 1.27553 1.97195 1.94029 1.21082 0.93596 0.97943 1.01790 1.18044 0.89286 0.84944 1.00761 1.84737 1.65486 1.34651 1.36427 1.25371 0.77984 0.86688 0.79935 1.90675 1.54052 1.57405 1.34953 1.21642 0.97346 0.90161 1.03792 1.19518 0.97385 0.98070 0.89013 1.20982 1.30853 1.09674 0.95246 0.90534 1.24938 0.94310 0.94605 0.99071 1.69892 1.34584 1.23104 1.26031 0.86826 0.78319 0.81361 0.83220 1.20107 1.21221 1.18640 0.89851 0.90098 0.90284 0.82881 0.82736 0.87826 0.87766 0.95490 0.95934 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.43 36.01 0.34 -0.89 16 2 C -0.07 -0.79 5.88 -104.47 -0.61 -1.41 16 3 C -0.11 -1.18 9.67 -39.55 -0.38 -1.57 16 4 C 0.07 0.82 7.30 -39.36 -0.29 0.53 16 5 F -0.13 -1.51 17.18 2.25 0.04 -1.47 16 6 C 0.08 0.94 7.30 -39.38 -0.29 0.65 16 7 F -0.12 -1.60 17.18 2.25 0.04 -1.56 16 8 C -0.12 -1.56 9.96 -39.37 -0.39 -1.96 16 9 C 0.11 1.50 4.93 -39.23 -0.19 1.31 16 10 O -0.30 -4.29 9.16 -23.68 -0.22 -4.50 16 11 C 0.46 7.71 7.46 36.01 0.27 7.98 16 12 O -0.49 -9.66 15.73 -18.75 -0.29 -9.96 16 13 C -0.09 -1.62 5.75 -27.88 -0.16 -1.78 16 14 C 0.00 -0.05 3.33 -27.88 -0.09 -0.15 16 15 C -0.53 -14.27 9.66 -34.44 -0.33 -14.61 16 16 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 19 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 23 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.08 0.83 7.53 -51.93 -0.39 0.43 16 25 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 26 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 27 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 29 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.03 0.63 7.16 -51.93 -0.37 0.26 16 31 H 0.02 0.53 7.53 -51.92 -0.39 0.14 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 294.73 15.07 4.44 4.44 Total: -1.00 -30.72 294.73 -5.39 -36.11 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -3.27 Total: -3.94 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -2.23 Total: -9.91 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.77 Total: -26.00 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.51 Total: -14.46 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.08 Total: -3.03 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.72 -5.39 -36.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813098231.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.810 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds