Wall clock time and date at job start Mon Mar 30 2020 00:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38196 * 119.99583 * 2 1 4 4 C 1.38375 * 120.05552 * 180.02562 * 3 2 1 5 5 F 1.35098 * 119.97717 * 179.97438 * 4 3 2 6 6 C 1.38698 * 120.04021 * 0.27936 * 4 3 2 7 7 F 1.35102 * 120.00711 * 179.69727 * 6 4 3 8 8 C 1.38312 * 119.98650 * 359.44299 * 6 4 3 9 9 C 1.38692 * 119.98929 * 180.02562 * 2 1 3 10 10 O 1.35956 * 120.02530 * 359.95533 * 9 2 1 11 11 C 1.34250 * 116.99721 * 81.86462 * 10 9 2 12 12 O 1.20828 * 120.00033 * 5.55746 * 11 10 9 13 13 C 1.50702 * 119.99997 * 185.54558 * 11 10 9 14 14 C 1.52996 * 109.47141 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47154 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00154 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00097 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00253 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00187 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46790 * 89.99956 * 19 17 15 21 21 H 1.48496 * 109.47123 * 210.00379 * 19 17 15 22 22 H 1.48499 * 109.47138 * 330.00457 * 19 17 15 23 23 H 1.08999 * 109.47089 * 90.00027 * 1 2 3 24 24 H 1.09001 * 109.47228 * 210.00285 * 1 2 3 25 25 H 1.09000 * 109.47063 * 330.00180 * 1 2 3 26 26 H 1.08000 * 119.96962 * 0.04311 * 3 2 1 27 27 H 1.07992 * 120.03104 * 180.29756 * 8 6 4 28 28 H 1.08993 * 109.47131 * 300.00575 * 13 11 10 29 29 H 1.09005 * 109.46633 * 60.00884 * 13 11 10 30 30 H 1.09001 * 109.47698 * 300.00823 * 14 13 11 31 31 H 1.09010 * 109.47188 * 60.00697 * 14 13 11 32 32 H 0.96998 * 120.00496 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1969 0.0000 4 6 3.5817 1.1983 -0.0005 5 9 4.2555 2.3693 -0.0011 6 6 4.2773 -0.0016 -0.0069 7 9 5.6283 0.0006 -0.0136 8 6 3.5876 -1.2005 -0.0011 9 6 2.2003 -1.2012 -0.0005 10 8 1.5208 -2.3788 -0.0001 11 6 1.0688 -2.8220 -1.1840 12 8 1.3578 -2.2343 -2.1995 13 6 0.2012 -4.0526 -1.2466 14 6 -0.1732 -4.3392 -2.7021 15 6 -1.0414 -5.5695 -2.7645 16 1 -1.3005 -6.0942 -1.8569 17 6 -1.5048 -6.0252 -3.9805 18 7 -2.2629 -7.0986 -4.0350 19 14 -1.0572 -5.1173 -5.5505 20 1 0.2035 -5.6751 -6.1025 21 1 -2.1480 -5.2805 -6.5448 22 1 -0.8712 -3.6745 -5.2521 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6574 2.1318 0.0007 27 1 4.1284 -2.1352 -0.0012 28 1 0.7468 -4.9030 -0.8379 29 1 -0.7051 -3.8882 -0.6636 30 1 -0.7187 -3.4888 -3.1112 31 1 0.7332 -4.5039 -3.2848 32 1 -2.5886 -7.4194 -4.8904 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813098231.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:58 Heat of formation + Delta-G solvation = -169.018676 kcal Electronic energy + Delta-G solvation = -19912.313574 eV Core-core repulsion = 16280.496850 eV Total energy + Delta-G solvation = -3631.816725 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.67093 -49.74729 -42.57758 -39.91620 -37.90224 -35.64861 -33.71594 -33.48270 -31.43651 -28.72414 -27.75057 -25.10555 -23.89632 -22.84517 -21.62447 -19.74388 -19.22615 -19.03622 -18.57294 -17.86912 -17.44897 -17.13890 -16.90922 -16.27635 -16.15850 -15.61707 -15.35047 -15.17172 -15.00501 -14.69908 -14.61476 -14.28789 -13.75884 -13.45875 -13.08142 -12.94306 -12.82926 -12.63684 -12.26165 -12.15718 -12.02909 -11.82303 -11.62990 -11.41770 -10.77977 -10.23617 -9.72736 -8.30724 -6.34904 -0.53719 -0.28252 1.02352 1.35212 1.38107 1.43905 1.50118 2.18671 2.34928 2.57563 3.05258 3.05555 3.33062 3.48361 3.57661 3.86713 4.16484 4.37621 4.37802 4.41530 4.51053 4.56531 4.64297 4.69613 4.86209 5.07540 5.10653 5.16760 5.29040 5.36026 5.52761 5.60133 6.21947 6.67410 6.75953 7.30515 8.84708 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032276 B = 0.003972 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.298728 B = 7046.911926 C = 7144.235307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.068 4.068 3 C -0.103 4.103 4 C 0.070 3.930 5 F -0.128 7.128 6 C 0.063 3.937 7 F -0.130 7.130 8 C -0.127 4.127 9 C 0.082 3.918 10 O -0.285 6.285 11 C 0.469 3.531 12 O -0.519 6.519 13 C -0.088 4.088 14 C 0.000 4.000 15 C -0.530 4.530 16 H 0.054 0.946 17 C 0.017 3.983 18 N -0.942 5.942 19 Si 0.935 3.065 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.255 1.255 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.111 0.889 26 H 0.187 0.813 27 H 0.163 0.837 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.021 0.979 31 H 0.015 0.985 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.080 17.586 10.965 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.068 4.068 3 C -0.121 4.121 4 C 0.050 3.950 5 F -0.106 7.106 6 C 0.043 3.957 7 F -0.109 7.109 8 C -0.146 4.146 9 C 0.040 3.960 10 O -0.200 6.200 11 C 0.315 3.685 12 O -0.405 6.405 13 C -0.125 4.125 14 C -0.037 4.037 15 C -0.568 4.568 16 H 0.072 0.928 17 C -0.181 4.181 18 N -0.582 5.582 19 Si 0.760 3.240 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.179 1.179 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.129 0.871 26 H 0.205 0.795 27 H 0.180 0.820 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.039 0.961 31 H 0.034 0.966 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.172 17.700 10.529 22.545 hybrid contribution 0.688 0.052 -0.928 1.157 sum 9.860 17.752 9.600 22.462 Atomic orbital electron populations 1.20950 0.87778 1.05686 1.03587 1.20310 0.98805 0.90762 0.96967 1.21110 0.90365 1.00279 1.00372 1.17794 0.91089 0.80007 1.06109 1.91536 1.80290 1.44841 1.93942 1.17371 0.77487 0.93126 1.07711 1.91530 1.27938 1.97237 1.94169 1.21164 0.93509 0.98483 1.01443 1.18327 0.89727 0.84985 1.02962 1.84697 1.65243 1.35352 1.34730 1.24955 0.77370 0.86027 0.80163 1.90666 1.55341 1.58325 1.36159 1.21423 0.98865 0.91457 1.00724 1.19356 0.96065 0.95827 0.92469 1.21323 1.30564 1.10568 0.94332 0.92766 1.25759 0.94493 0.95407 1.02472 1.70013 1.36351 1.24929 1.26952 0.85879 0.78218 0.80384 0.79550 1.19574 1.20644 1.17939 0.90767 0.90458 0.87062 0.79532 0.81961 0.86318 0.85799 0.96058 0.96634 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 9.43 71.24 0.67 -1.48 16 2 C -0.07 -1.42 5.88 -19.76 -0.12 -1.54 16 3 C -0.10 -1.81 9.67 22.29 0.22 -1.60 16 4 C 0.07 1.50 7.30 22.41 0.16 1.66 16 5 F -0.13 -2.78 17.18 44.97 0.77 -2.01 16 6 C 0.06 1.49 7.30 22.40 0.16 1.65 16 7 F -0.13 -3.22 17.18 44.97 0.77 -2.45 16 8 C -0.13 -3.03 9.96 22.40 0.22 -2.81 16 9 C 0.08 2.07 4.93 22.50 0.11 2.18 16 10 O -0.28 -7.77 9.16 4.32 0.04 -7.73 16 11 C 0.47 15.18 7.46 71.24 0.53 15.71 16 12 O -0.52 -19.95 15.73 21.96 0.35 -19.60 16 13 C -0.09 -2.96 5.75 29.85 0.17 -2.79 16 14 C 0.00 0.02 3.33 29.85 0.10 0.12 16 15 C -0.53 -28.59 9.66 25.60 0.25 -28.34 16 16 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 17 C 0.02 0.95 5.47 84.65 0.46 1.41 16 18 N -0.94 -56.87 13.96 21.45 0.30 -56.57 16 19 Si 0.94 44.05 27.47 68.60 1.88 45.93 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.26 -11.66 6.54 99.48 0.65 -11.01 16 23 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.08 1.40 7.53 -2.39 -0.02 1.38 16 25 H 0.11 1.18 8.09 -2.39 -0.02 1.16 16 26 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 27 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 28 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 29 H 0.12 3.70 8.14 -2.38 -0.02 3.68 16 30 H 0.02 0.97 7.16 -2.39 -0.02 0.96 16 31 H 0.02 0.71 7.53 -2.38 -0.02 0.69 16 32 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -65.50 294.73 8.15 -57.34 By element: Atomic # 1 Polarization: -0.20 SS G_CDS: 1.09 Total: 0.89 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 2.95 Total: -15.82 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.30 Total: -56.57 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: 0.38 Total: -27.33 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 1.55 Total: -4.45 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -65.50 8.15 -57.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813098231.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.674 kcal (2) G-P(sol) polarization free energy of solvation -65.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds