Wall clock time and date at job start Mon Mar 30 2020 01:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99978 * 2 1 4 4 H 1.48502 * 109.47146 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47163 * 300.00307 * 3 2 1 6 6 H 1.48500 * 109.46993 * 60.00241 * 3 2 1 7 7 C 1.37871 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99879 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00167 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47652 * 179.97438 * 9 7 2 11 11 C 1.42895 * 114.00397 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47002 * 179.97438 * 11 10 9 13 13 O 1.45196 * 109.47485 * 65.00220 * 12 11 10 14 14 C 1.34871 * 117.00081 * 180.02562 * 13 12 11 15 15 O 1.21583 * 120.00029 * 359.97438 * 14 13 12 16 16 C 1.46565 * 119.99865 * 180.26968 * 14 13 12 17 17 N 1.29768 * 119.55047 * 359.45495 * 16 14 13 18 18 N 1.39856 * 121.12741 * 179.88454 * 17 16 14 19 19 C 1.34752 * 120.34067 * 19.65367 * 18 17 16 20 20 O 1.21251 * 120.11853 * 179.49535 * 19 18 17 21 21 C 1.50769 * 119.76136 * 359.51374 * 19 18 17 22 22 C 1.50538 * 119.55258 * 179.71979 * 16 14 13 23 23 H 0.96997 * 119.99564 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47455 * 59.99037 * 9 7 2 25 25 H 1.09000 * 109.46911 * 299.99743 * 9 7 2 26 26 H 1.09001 * 109.47437 * 59.99569 * 11 10 9 27 27 H 1.09002 * 109.46840 * 299.99721 * 11 10 9 28 28 H 1.08998 * 109.47123 * 304.99582 * 12 11 10 29 29 H 1.09010 * 109.46923 * 184.99921 * 12 11 10 30 30 H 0.96998 * 119.86622 * 199.41368 * 18 17 16 31 31 H 1.09001 * 109.51371 * 206.80411 * 21 19 18 32 32 H 1.09001 * 109.51475 * 86.64771 * 21 19 18 33 33 H 1.09003 * 109.45464 * 265.84628 * 22 16 14 34 34 H 1.09005 * 109.44874 * 25.79100 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6481 -5.9561 0.0004 13 8 3.4003 -5.8885 1.2405 14 6 4.4000 -6.7797 1.3997 15 8 4.6357 -7.5914 0.5257 16 6 5.1979 -6.7740 2.6291 17 7 4.9419 -5.9008 3.5542 18 7 5.6809 -5.8672 4.7411 19 6 6.8955 -6.4474 4.8034 20 8 7.5367 -6.4079 5.8318 21 6 7.4546 -7.1453 3.5896 22 6 6.3072 -7.7775 2.7990 23 1 -0.4849 0.8401 0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6242 -2.5566 0.8903 26 1 0.9446 -4.9827 -0.8886 27 1 0.9453 -4.9821 0.8914 28 1 3.3210 -5.7957 -0.8419 29 1 2.1820 -6.9375 -0.0887 30 1 5.3192 -5.4211 5.5229 31 1 8.1510 -7.9224 3.9049 32 1 7.9748 -6.4224 2.9612 33 1 5.9308 -8.6470 3.3379 34 1 6.6697 -8.0871 1.8187 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815168725.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:46 Heat of formation + Delta-G solvation = -128.809439 kcal Electronic energy + Delta-G solvation = -19884.047271 eV Core-core repulsion = 16397.354416 eV Total energy + Delta-G solvation = -3486.692855 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.11286 -40.22089 -37.74229 -37.08788 -36.16023 -33.68075 -32.79429 -31.98019 -30.07995 -27.01456 -26.28261 -24.78606 -22.61332 -22.28244 -21.58449 -19.35802 -18.49105 -17.68509 -16.87790 -16.75340 -16.45498 -16.25449 -16.06347 -15.39437 -14.71858 -14.61467 -14.36635 -13.83864 -13.81262 -13.26850 -13.07459 -12.72080 -12.67118 -12.03281 -12.01519 -11.48030 -11.42233 -11.07091 -10.92689 -10.82954 -10.70113 -10.48075 -10.15140 -10.05895 -9.47743 -9.12626 -8.89680 -8.22802 -6.12984 -4.14423 0.38320 1.88199 1.97583 2.45763 2.62134 3.28527 3.35123 3.41642 3.54884 4.01873 4.20072 4.31299 4.52641 4.54982 4.68164 4.84309 5.11480 5.18787 5.23260 5.23968 5.38721 5.58250 5.80959 5.87520 6.00310 6.13199 6.31230 7.03689 7.06231 7.38666 7.45578 7.59372 7.77515 8.11344 8.50604 8.98385 9.50509 10.98657 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018604 B = 0.003881 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.684165 B = 7212.132539 C = 8326.452538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.061 3.939 12 C 0.073 3.927 13 O -0.318 6.318 14 C 0.529 3.471 15 O -0.495 6.495 16 C 0.083 3.917 17 N -0.153 5.153 18 N -0.556 5.556 19 C 0.498 3.502 20 O -0.516 6.516 21 C -0.144 4.144 22 C -0.103 4.103 23 H 0.264 0.736 24 H 0.006 0.994 25 H 0.008 0.992 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.438 0.562 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.786 -17.171 4.948 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.017 4.017 12 C -0.001 4.001 13 O -0.232 6.232 14 C 0.369 3.631 15 O -0.381 6.381 16 C -0.110 4.110 17 N 0.031 4.969 18 N -0.306 5.306 19 C 0.285 3.715 20 O -0.387 6.387 21 C -0.184 4.184 22 C -0.142 4.142 23 H 0.073 0.927 24 H 0.024 0.976 25 H 0.026 0.974 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.284 0.716 31 H 0.141 0.859 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.807 -16.574 5.415 20.005 hybrid contribution 0.293 0.564 0.119 0.646 sum 10.099 -16.010 5.535 19.722 Atomic orbital electron populations 1.69969 1.06097 1.27090 1.50650 1.24939 0.94973 0.99433 0.95112 0.86287 0.80043 0.82573 0.77636 1.19482 1.20833 1.20807 1.21085 0.94140 0.89286 1.50702 0.91465 1.20241 0.88726 0.83469 0.95526 1.87919 1.35311 1.12580 1.95231 1.22325 0.93133 0.85466 1.00747 1.23379 0.93717 0.99219 0.83749 1.86815 1.42188 1.52452 1.41707 1.19968 0.79188 0.79009 0.84911 1.90906 1.67940 1.37753 1.41468 1.23777 0.97971 0.95443 0.93788 1.74989 1.13912 1.15256 0.92761 1.47151 1.16291 1.55495 1.11648 1.21390 0.81435 0.77981 0.90719 1.90799 1.57935 1.57978 1.32034 1.21880 0.99206 1.02580 0.94776 1.20923 0.92044 0.96847 1.04434 0.92684 0.97598 0.97432 0.91716 0.93018 0.90035 0.89958 0.71632 0.85887 0.86909 0.87726 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -15.07 9.43 -34.44 -0.32 -15.39 16 8 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 9 C 0.19 5.25 5.69 36.00 0.20 5.45 16 10 O -0.39 -9.24 10.30 -38.80 -0.40 -9.64 16 11 C 0.06 1.06 6.33 37.16 0.24 1.29 16 12 C 0.07 1.05 5.86 37.16 0.22 1.27 16 13 O -0.32 -4.95 9.98 -43.75 -0.44 -5.39 16 14 C 0.53 6.95 7.91 34.09 0.27 7.22 16 15 O -0.50 -6.79 16.03 -19.33 -0.31 -7.10 16 16 C 0.08 0.90 6.77 -80.19 -0.54 0.35 16 17 N -0.15 -1.85 11.51 34.87 0.40 -1.45 16 18 N -0.56 -5.79 6.61 31.23 0.21 -5.58 16 19 C 0.50 5.13 7.83 -10.96 -0.09 5.05 16 20 O -0.52 -6.92 17.94 5.58 0.10 -6.82 16 21 C -0.14 -0.99 6.20 -27.84 -0.17 -1.16 16 22 C -0.10 -0.72 5.85 -27.95 -0.16 -0.88 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 30 H 0.44 3.95 8.93 -182.78 -1.63 2.32 16 31 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.12 0.72 7.54 -51.93 -0.39 0.33 16 LS Contribution 309.69 15.07 4.67 4.67 Total: -1.00 -34.76 309.69 -5.89 -40.65 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -5.37 Total: -4.88 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.46 Total: 4.72 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 1.34 Total: -32.96 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -1.05 Total: -28.95 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.76 -5.89 -40.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815168725.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.162 kcal (2) G-P(sol) polarization free energy of solvation -34.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds