Wall clock time and date at job start Mon Mar 30 2020 01:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99978 * 2 1 4 4 H 1.48502 * 109.47146 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47163 * 300.00307 * 3 2 1 6 6 H 1.48500 * 109.46993 * 60.00241 * 3 2 1 7 7 C 1.37871 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99879 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00167 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47652 * 179.97438 * 9 7 2 11 11 C 1.42895 * 114.00397 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47002 * 179.97438 * 11 10 9 13 13 O 1.45196 * 109.47485 * 65.00220 * 12 11 10 14 14 C 1.34871 * 117.00081 * 180.02562 * 13 12 11 15 15 O 1.21583 * 120.00029 * 359.97438 * 14 13 12 16 16 C 1.46565 * 119.99865 * 180.26968 * 14 13 12 17 17 N 1.29768 * 119.55047 * 359.45495 * 16 14 13 18 18 N 1.39856 * 121.12741 * 179.88454 * 17 16 14 19 19 C 1.34752 * 120.34067 * 19.65367 * 18 17 16 20 20 O 1.21251 * 120.11853 * 179.49535 * 19 18 17 21 21 C 1.50769 * 119.76136 * 359.51374 * 19 18 17 22 22 C 1.50538 * 119.55258 * 179.71979 * 16 14 13 23 23 H 0.96997 * 119.99564 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47455 * 59.99037 * 9 7 2 25 25 H 1.09000 * 109.46911 * 299.99743 * 9 7 2 26 26 H 1.09001 * 109.47437 * 59.99569 * 11 10 9 27 27 H 1.09002 * 109.46840 * 299.99721 * 11 10 9 28 28 H 1.08998 * 109.47123 * 304.99582 * 12 11 10 29 29 H 1.09010 * 109.46923 * 184.99921 * 12 11 10 30 30 H 0.96998 * 119.86622 * 199.41368 * 18 17 16 31 31 H 1.09001 * 109.51371 * 206.80411 * 21 19 18 32 32 H 1.09001 * 109.51475 * 86.64771 * 21 19 18 33 33 H 1.09003 * 109.45464 * 265.84628 * 22 16 14 34 34 H 1.09005 * 109.44874 * 25.79100 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6481 -5.9561 0.0004 13 8 3.4003 -5.8885 1.2405 14 6 4.4000 -6.7797 1.3997 15 8 4.6357 -7.5914 0.5257 16 6 5.1979 -6.7740 2.6291 17 7 4.9419 -5.9008 3.5542 18 7 5.6809 -5.8672 4.7411 19 6 6.8955 -6.4474 4.8034 20 8 7.5367 -6.4079 5.8318 21 6 7.4546 -7.1453 3.5896 22 6 6.3072 -7.7775 2.7990 23 1 -0.4849 0.8401 0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6242 -2.5566 0.8903 26 1 0.9446 -4.9827 -0.8886 27 1 0.9453 -4.9821 0.8914 28 1 3.3210 -5.7957 -0.8419 29 1 2.1820 -6.9375 -0.0887 30 1 5.3192 -5.4211 5.5229 31 1 8.1510 -7.9224 3.9049 32 1 7.9748 -6.4224 2.9612 33 1 5.9308 -8.6470 3.3379 34 1 6.6697 -8.0871 1.8187 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815168725.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:45 Heat of formation + Delta-G solvation = -154.704813 kcal Electronic energy + Delta-G solvation = -19885.170179 eV Core-core repulsion = 16397.354416 eV Total energy + Delta-G solvation = -3487.815762 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.99688 -41.21305 -38.86287 -38.42667 -37.49550 -34.94189 -34.39213 -32.83149 -31.49633 -29.03960 -27.11295 -25.65655 -24.54040 -23.61493 -22.62130 -20.25896 -19.40157 -18.67645 -18.47762 -17.94927 -17.84572 -17.26023 -17.00736 -16.85934 -16.36936 -16.21583 -15.36653 -15.29824 -14.74637 -14.39651 -14.10550 -13.80342 -13.67966 -13.53992 -13.19642 -12.89645 -12.79156 -12.72595 -12.46712 -12.19738 -12.03818 -11.79973 -11.72368 -11.25556 -10.96910 -10.88846 -10.31205 -10.24874 -8.32262 -6.43854 -0.50728 1.01119 1.13762 1.40339 1.41277 1.55827 1.55960 1.69789 2.34638 2.79615 3.01983 3.09966 3.39006 3.44097 3.83592 3.94467 4.00704 4.12859 4.16065 4.46233 4.53785 4.66779 4.71701 4.74453 4.87585 4.99775 5.17960 5.22639 5.36186 5.55146 5.96246 6.21145 6.48954 6.53587 6.74232 6.81282 7.27911 8.80160 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018604 B = 0.003881 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.684165 B = 7212.132539 C = 8326.452538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.050 3.950 12 C 0.077 3.923 13 O -0.344 6.344 14 C 0.530 3.470 15 O -0.499 6.499 16 C 0.089 3.911 17 N -0.185 5.185 18 N -0.554 5.554 19 C 0.496 3.504 20 O -0.552 6.552 21 C -0.137 4.137 22 C -0.096 4.096 23 H 0.271 0.729 24 H -0.006 1.006 25 H -0.012 1.012 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.440 0.560 31 H 0.149 0.851 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.940 -17.818 4.546 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.330 6.330 11 C -0.026 4.026 12 C 0.004 3.996 13 O -0.258 6.258 14 C 0.371 3.629 15 O -0.385 6.385 16 C -0.103 4.103 17 N -0.001 5.001 18 N -0.303 5.303 19 C 0.284 3.716 20 O -0.427 6.427 21 C -0.177 4.177 22 C -0.135 4.135 23 H 0.080 0.920 24 H 0.011 0.989 25 H 0.006 0.994 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.137 0.863 30 H 0.286 0.714 31 H 0.167 0.833 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.949 -17.250 4.998 21.034 hybrid contribution -0.128 0.676 0.231 0.725 sum 10.821 -16.575 5.229 20.473 Atomic orbital electron populations 1.70062 1.07628 1.28577 1.50573 1.25900 0.95939 1.03202 0.93944 0.85180 0.78622 0.77556 0.78320 1.19060 1.19491 1.19731 1.21418 0.94052 0.91017 1.52146 0.92281 1.19851 0.88535 0.84384 0.93870 1.87858 1.35500 1.14272 1.95329 1.22691 0.94693 0.83350 1.01890 1.23373 0.93144 0.99571 0.83542 1.86800 1.43212 1.53681 1.42132 1.20271 0.78689 0.78362 0.85601 1.90898 1.67960 1.37759 1.41846 1.23974 0.98130 0.95826 0.92360 1.74930 1.15061 1.16522 0.93616 1.47162 1.16455 1.55436 1.11272 1.22022 0.80871 0.77360 0.91310 1.90784 1.58703 1.59517 1.33655 1.21977 0.99354 1.03234 0.93102 1.21066 0.90693 0.96205 1.05576 0.92017 0.98860 0.99398 0.89688 0.92743 0.90068 0.86298 0.71447 0.83286 0.85911 0.85640 0.84715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 2 C 0.01 0.50 5.46 84.65 0.46 0.97 16 3 Si 0.98 44.40 29.54 68.60 2.03 46.43 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.55 -32.73 9.43 25.60 0.24 -32.49 16 8 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 9 C 0.21 11.56 5.69 71.24 0.41 11.97 16 10 O -0.41 -19.70 10.30 -145.57 -1.50 -21.20 16 11 C 0.05 1.73 6.33 71.98 0.46 2.19 16 12 C 0.08 2.11 5.86 71.98 0.42 2.53 16 13 O -0.34 -10.47 9.98 -55.18 -0.55 -11.02 16 14 C 0.53 13.17 7.91 69.99 0.55 13.73 16 15 O -0.50 -12.63 16.03 19.56 0.31 -12.32 16 16 C 0.09 1.80 6.77 44.99 0.30 2.10 16 17 N -0.19 -4.37 11.51 -43.59 -0.50 -4.88 16 18 N -0.55 -11.33 6.61 -173.53 -1.15 -12.48 16 19 C 0.50 9.71 7.83 87.68 0.69 10.40 16 20 O -0.55 -14.56 17.94 -2.94 -0.05 -14.61 16 21 C -0.14 -1.53 6.20 29.87 0.19 -1.35 16 22 C -0.10 -1.07 5.85 29.80 0.17 -0.90 16 23 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 24 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 25 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.12 2.40 8.14 -2.38 -0.02 2.38 16 30 H 0.44 8.10 8.93 -213.48 -1.91 6.19 16 31 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.13 1.16 7.54 -2.38 -0.02 1.14 16 Total: -1.00 -75.29 309.69 1.99 -73.29 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -0.77 Total: 2.75 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 3.89 Total: 9.14 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -1.36 Total: -72.47 kcal Atomic # 8 Polarization: -57.35 SS G_CDS: -1.79 Total: -59.14 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -75.29 1.99 -73.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815168725.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.410 kcal (2) G-P(sol) polarization free energy of solvation -75.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds