Wall clock time and date at job start Mon Mar 30 2020 01:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47240 * 191.64439 * 3 2 1 5 5 C 1.36892 * 120.00103 * 264.95856 * 4 3 2 6 6 H 1.08001 * 120.00133 * 140.70969 * 5 4 3 7 7 C 1.39035 * 119.99433 * 320.43246 * 5 4 3 8 8 N 1.31373 * 119.99944 * 160.60117 * 7 5 4 9 9 Si 1.86804 * 120.00441 * 340.59878 * 7 5 4 10 10 H 1.48493 * 109.47311 * 90.52691 * 9 7 5 11 11 H 1.48500 * 109.46991 * 210.52884 * 9 7 5 12 12 H 1.48499 * 109.46963 * 330.52649 * 9 7 5 13 13 C 1.34773 * 120.00374 * 84.95384 * 4 3 2 14 14 O 1.21587 * 120.00583 * 175.54905 * 13 4 3 15 15 C 1.47773 * 119.99889 * 355.54785 * 13 4 3 16 16 C 1.39961 * 125.70479 * 173.95513 * 15 13 4 17 17 C 1.38560 * 107.59038 * 180.02562 * 16 15 13 18 18 N 1.34122 * 132.32952 * 180.02562 * 17 16 15 19 19 C 1.31133 * 120.84103 * 180.02562 * 18 17 16 20 20 C 1.40344 * 120.29709 * 359.95463 * 19 18 17 21 21 C 1.35469 * 119.46300 * 0.02562 * 20 19 18 22 22 N 1.36654 * 119.14482 * 359.97438 * 21 20 19 23 23 N 1.32425 * 125.69829 * 353.65429 * 15 13 4 24 24 H 4.40637 * 5.51382 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47178 * 71.64471 * 3 2 1 26 26 H 1.09002 * 109.47252 * 311.64337 * 3 2 1 27 27 H 0.97000 * 120.00373 * 180.02562 * 8 7 5 28 28 H 1.07997 * 126.20069 * 359.97438 * 16 15 13 29 29 H 1.08002 * 119.85675 * 179.97438 * 19 18 17 30 30 H 1.08000 * 120.26606 * 179.97438 * 20 19 18 31 31 H 1.07996 * 120.42112 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3536 0.2788 5 6 3.4598 2.1901 -0.7546 6 1 3.2108 3.2396 -0.6990 7 6 4.1165 1.6897 -1.8732 8 7 4.0963 2.3615 -3.0020 9 14 5.0279 0.0623 -1.7712 10 1 4.1079 -1.0441 -2.1379 11 1 6.1793 0.0801 -2.7089 12 1 5.5211 -0.1427 -0.3856 13 6 3.2614 1.7748 1.5526 14 8 3.7419 2.8669 1.7866 15 6 2.8174 0.9094 2.6650 16 6 3.0007 1.1719 4.0275 17 6 2.4429 0.1195 4.7355 18 7 2.3418 -0.1324 6.0489 19 6 1.7558 -1.2231 6.4811 20 6 1.2218 -2.1482 5.5708 21 6 1.3169 -1.9057 4.2414 22 7 1.9321 -0.7621 3.8157 23 7 2.1746 -0.2416 2.5394 24 1 -1.0502 -0.0003 -0.0003 25 1 3.0095 -0.3228 -0.9754 26 1 3.0097 -0.6821 0.7680 27 1 4.5541 2.0123 -3.7826 28 1 3.4890 2.0374 4.4503 29 1 1.6836 -1.4102 7.5423 30 1 0.7398 -3.0465 5.9273 31 1 0.9118 -2.6073 3.5272 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821676334.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:29 Heat of formation + Delta-G solvation = 176.283669 kcal Electronic energy + Delta-G solvation = -19827.335270 eV Core-core repulsion = 16693.473916 eV Total energy + Delta-G solvation = -3133.861354 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.16130 -39.11613 -37.48693 -35.44379 -33.98035 -32.72912 -31.65143 -30.99316 -28.97392 -26.80200 -26.10098 -24.41165 -23.43051 -21.89005 -19.29255 -18.53262 -18.00040 -17.58793 -16.70647 -16.41239 -15.96311 -15.74615 -14.99764 -14.55366 -14.36977 -13.87064 -13.41272 -13.17964 -13.05457 -12.81689 -12.69264 -12.41104 -12.21215 -11.23595 -11.08084 -10.94338 -10.76124 -10.27237 -9.86364 -9.76335 -9.59506 -9.33380 -9.20016 -8.86804 -8.04209 -7.82114 -6.54747 -4.13155 0.48867 0.81319 2.08992 2.22501 2.94967 3.13112 3.19313 3.27311 3.38962 3.52979 3.78055 4.01017 4.06159 4.06746 4.29576 4.50682 4.78145 4.83202 5.08440 5.13334 5.26863 5.41807 5.59354 5.80509 5.91454 6.01302 6.14280 6.40629 6.49479 6.59105 7.31762 7.47840 7.59318 8.09462 8.25100 8.33451 8.74468 9.09215 9.53622 10.55653 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027407 B = 0.006042 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.395738 B = 4632.957490 C = 4941.207373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.147 4.147 3 C 0.187 3.813 4 N -0.435 5.435 5 C -0.312 4.312 6 H 0.112 0.888 7 C 0.066 3.934 8 N -0.848 5.848 9 Si 0.870 3.130 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.258 1.258 13 C 0.530 3.470 14 O -0.539 6.539 15 C 0.096 3.904 16 C -0.204 4.204 17 C 0.239 3.761 18 N -0.459 5.459 19 C 0.171 3.829 20 C -0.237 4.237 21 C 0.167 3.833 22 N -0.315 5.315 23 N -0.276 5.276 24 H 0.209 0.791 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.279 0.721 28 H 0.169 0.831 29 H 0.176 0.824 30 H 0.163 0.837 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.406 -13.508 13.669 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.149 4.149 3 C 0.064 3.936 4 N -0.154 5.154 5 C -0.440 4.440 6 H 0.130 0.870 7 C -0.142 4.142 8 N -0.483 5.483 9 Si 0.697 3.303 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.182 1.182 13 C 0.316 3.684 14 O -0.418 6.418 15 C -0.063 4.063 16 C -0.235 4.235 17 C 0.015 3.985 18 N -0.169 5.169 19 C -0.015 4.015 20 C -0.261 4.261 21 C 0.032 3.968 22 N -0.088 5.088 23 N -0.106 5.106 24 H 0.226 0.774 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.089 0.911 28 H 0.187 0.813 29 H 0.193 0.807 30 H 0.181 0.819 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.058 -12.856 13.031 19.282 hybrid contribution 0.064 -1.082 -0.072 1.087 sum -5.994 -13.938 12.959 19.954 Atomic orbital electron populations 1.24526 0.95475 1.01211 1.03754 1.23306 0.94380 0.99362 0.97816 1.19146 0.84800 0.87073 1.02555 1.43593 1.54728 1.12394 1.04729 1.19129 1.37249 0.94262 0.93332 0.87016 1.25412 0.95701 0.98378 0.94748 1.69689 1.38936 1.39478 1.00176 0.87078 0.80362 0.83164 0.79740 1.19534 1.20533 1.18204 1.16956 0.83652 0.86869 0.80922 1.90699 1.47296 1.21239 1.82521 1.22805 0.95053 0.92717 0.95773 1.20991 1.11268 1.01037 0.90170 1.20503 0.99678 0.92846 0.85521 1.68210 1.17245 1.20486 1.11006 1.23324 0.89474 0.87685 1.01053 1.21731 1.08377 1.04383 0.91654 1.22026 0.91581 0.86509 0.96649 1.47461 1.37741 1.15498 1.08058 1.78609 1.25089 1.13155 0.93741 0.77382 0.88637 0.88103 0.91072 0.81322 0.80672 0.81918 0.80665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.22 19.25 29.55 0.57 -3.65 16 2 C -0.15 -3.09 12.02 -37.12 -0.45 -3.53 16 3 C 0.19 4.16 4.10 -6.83 -0.03 4.13 16 4 N -0.43 -11.14 2.12 -119.04 -0.25 -11.40 16 5 C -0.31 -8.90 9.32 -15.00 -0.14 -9.04 16 6 H 0.11 3.52 7.98 -52.49 -0.42 3.10 16 7 C 0.07 1.81 5.31 -17.45 -0.09 1.71 16 8 N -0.85 -24.01 13.95 55.50 0.77 -23.24 16 9 Si 0.87 20.13 25.12 -169.99 -4.27 15.86 16 10 H -0.27 -5.74 6.50 56.52 0.37 -5.37 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 13 C 0.53 13.42 7.58 -12.36 -0.09 13.33 16 14 O -0.54 -15.10 16.81 5.29 0.09 -15.01 16 15 C 0.10 2.07 6.66 -83.07 -0.55 1.52 16 16 C -0.20 -3.94 10.66 -38.82 -0.41 -4.35 16 17 C 0.24 4.03 7.90 -155.41 -1.23 2.80 16 18 N -0.46 -6.44 10.48 -12.22 -0.13 -6.57 16 19 C 0.17 1.55 11.27 -17.06 -0.19 1.36 16 20 C -0.24 -1.77 10.05 -39.78 -0.40 -2.17 16 21 C 0.17 1.75 11.30 -16.39 -0.19 1.57 16 22 N -0.32 -5.00 3.90 -12.20 -0.05 -5.04 16 23 N -0.28 -5.31 8.16 33.22 0.27 -5.04 16 24 H 0.21 2.89 7.80 -54.08 -0.42 2.47 16 25 H 0.10 2.15 3.45 -51.93 -0.18 1.97 16 26 H 0.10 2.08 5.83 -51.93 -0.30 1.78 16 27 H 0.28 7.23 8.31 -40.82 -0.34 6.90 16 28 H 0.17 3.12 8.06 -52.49 -0.42 2.70 16 29 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 31 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 282.29 15.07 4.25 4.25 Total: -1.00 -34.43 282.29 -4.70 -39.13 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -2.18 Total: 3.38 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -3.20 Total: 3.67 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.62 Total: -51.28 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.09 Total: -15.01 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.27 Total: 15.86 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -34.43 -4.70 -39.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821676334.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.411 kcal (2) G-P(sol) polarization free energy of solvation -34.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds