Wall clock time and date at job start Mon Mar 30 2020 01:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47240 * 191.64439 * 3 2 1 5 5 C 1.36892 * 120.00103 * 264.95856 * 4 3 2 6 6 H 1.08001 * 120.00133 * 140.70969 * 5 4 3 7 7 C 1.39035 * 119.99433 * 320.43246 * 5 4 3 8 8 N 1.31373 * 119.99944 * 160.60117 * 7 5 4 9 9 Si 1.86804 * 120.00441 * 340.59878 * 7 5 4 10 10 H 1.48493 * 109.47311 * 90.52691 * 9 7 5 11 11 H 1.48500 * 109.46991 * 210.52884 * 9 7 5 12 12 H 1.48499 * 109.46963 * 330.52649 * 9 7 5 13 13 C 1.34773 * 120.00374 * 84.95384 * 4 3 2 14 14 O 1.21587 * 120.00583 * 175.54905 * 13 4 3 15 15 C 1.47773 * 119.99889 * 355.54785 * 13 4 3 16 16 C 1.39961 * 125.70479 * 173.95513 * 15 13 4 17 17 C 1.38560 * 107.59038 * 180.02562 * 16 15 13 18 18 N 1.34122 * 132.32952 * 180.02562 * 17 16 15 19 19 C 1.31133 * 120.84103 * 180.02562 * 18 17 16 20 20 C 1.40344 * 120.29709 * 359.95463 * 19 18 17 21 21 C 1.35469 * 119.46300 * 0.02562 * 20 19 18 22 22 N 1.36654 * 119.14482 * 359.97438 * 21 20 19 23 23 N 1.32425 * 125.69829 * 353.65429 * 15 13 4 24 24 H 4.40637 * 5.51382 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47178 * 71.64471 * 3 2 1 26 26 H 1.09002 * 109.47252 * 311.64337 * 3 2 1 27 27 H 0.97000 * 120.00373 * 180.02562 * 8 7 5 28 28 H 1.07997 * 126.20069 * 359.97438 * 16 15 13 29 29 H 1.08002 * 119.85675 * 179.97438 * 19 18 17 30 30 H 1.08000 * 120.26606 * 179.97438 * 20 19 18 31 31 H 1.07996 * 120.42112 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3536 0.2788 5 6 3.4598 2.1901 -0.7546 6 1 3.2108 3.2396 -0.6990 7 6 4.1165 1.6897 -1.8732 8 7 4.0963 2.3615 -3.0020 9 14 5.0279 0.0623 -1.7712 10 1 4.1079 -1.0441 -2.1379 11 1 6.1793 0.0801 -2.7089 12 1 5.5211 -0.1427 -0.3856 13 6 3.2614 1.7748 1.5526 14 8 3.7419 2.8669 1.7866 15 6 2.8174 0.9094 2.6650 16 6 3.0007 1.1719 4.0275 17 6 2.4429 0.1195 4.7355 18 7 2.3418 -0.1324 6.0489 19 6 1.7558 -1.2231 6.4811 20 6 1.2218 -2.1482 5.5708 21 6 1.3169 -1.9057 4.2414 22 7 1.9321 -0.7621 3.8157 23 7 2.1746 -0.2416 2.5394 24 1 -1.0502 -0.0003 -0.0003 25 1 3.0095 -0.3228 -0.9754 26 1 3.0097 -0.6821 0.7680 27 1 4.5541 2.0123 -3.7826 28 1 3.4890 2.0374 4.4503 29 1 1.6836 -1.4102 7.5423 30 1 0.7398 -3.0465 5.9273 31 1 0.9118 -2.6073 3.5272 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821676334.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:28 Heat of formation + Delta-G solvation = 151.330080 kcal Electronic energy + Delta-G solvation = -19828.417338 eV Core-core repulsion = 16693.473916 eV Total energy + Delta-G solvation = -3134.943423 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.34901 -40.86283 -38.73514 -37.37898 -35.04391 -34.63964 -33.37847 -32.18560 -30.18763 -28.55551 -27.84078 -25.63323 -24.70008 -23.28156 -20.88905 -20.27119 -19.18679 -19.01470 -18.41526 -17.63970 -17.36496 -17.18655 -16.37590 -16.19206 -15.85837 -15.28553 -14.96536 -14.68567 -14.59385 -14.51550 -14.12469 -13.79366 -13.57850 -12.98918 -12.72389 -12.28686 -12.23727 -12.06197 -11.46260 -11.33074 -11.11541 -10.88310 -10.75549 -10.48229 -10.06228 -9.06185 -8.64249 -6.31655 -0.44917 -0.26025 0.76451 0.97835 1.12063 1.26511 1.36788 1.67126 1.99069 2.07894 2.20607 2.45343 2.46525 2.85633 2.91701 3.07260 3.59157 3.61941 3.76908 4.07354 4.18743 4.25423 4.34353 4.43997 4.60866 4.67977 5.06886 5.11884 5.13513 5.34331 5.48451 5.87599 6.11791 6.37558 6.62311 6.67435 6.75997 7.00536 7.54068 8.51531 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027407 B = 0.006042 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.395738 B = 4632.957490 C = 4941.207373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.205 4.205 3 C 0.193 3.807 4 N -0.445 5.445 5 C -0.340 4.340 6 H 0.056 0.944 7 C 0.026 3.974 8 N -0.891 5.891 9 Si 0.933 3.067 10 H -0.232 1.232 11 H -0.268 1.268 12 H -0.263 1.263 13 C 0.527 3.473 14 O -0.587 6.587 15 C 0.070 3.930 16 C -0.244 4.244 17 C 0.253 3.747 18 N -0.495 5.495 19 C 0.188 3.812 20 C -0.190 4.190 21 C 0.135 3.865 22 N -0.310 5.310 23 N -0.287 5.287 24 H 0.253 0.747 25 H 0.090 0.910 26 H 0.115 0.885 27 H 0.287 0.713 28 H 0.156 0.844 29 H 0.230 0.770 30 H 0.226 0.774 31 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.589 -18.756 16.582 26.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.206 4.206 3 C 0.072 3.928 4 N -0.165 5.165 5 C -0.467 4.467 6 H 0.074 0.926 7 C -0.179 4.179 8 N -0.526 5.526 9 Si 0.755 3.245 10 H -0.157 1.157 11 H -0.194 1.194 12 H -0.187 1.187 13 C 0.315 3.685 14 O -0.469 6.469 15 C -0.087 4.087 16 C -0.276 4.276 17 C 0.025 3.975 18 N -0.208 5.208 19 C 0.005 3.995 20 C -0.213 4.213 21 C 0.003 3.997 22 N -0.083 5.083 23 N -0.118 5.118 24 H 0.269 0.731 25 H 0.108 0.892 26 H 0.133 0.867 27 H 0.097 0.903 28 H 0.174 0.826 29 H 0.246 0.754 30 H 0.242 0.758 31 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.285 -18.161 15.930 25.539 hybrid contribution 0.481 0.355 -0.552 0.813 sum -7.805 -17.806 15.378 24.788 Atomic orbital electron populations 1.25498 0.96292 0.98119 1.00927 1.23329 0.94749 1.02117 1.00453 1.19092 0.86238 0.84974 1.02527 1.43629 1.55302 1.13432 1.04092 1.18714 1.39760 0.92889 0.95358 0.92631 1.26125 0.95513 1.02649 0.93606 1.69776 1.39931 1.41882 1.01035 0.86086 0.79563 0.79242 0.79593 1.15709 1.19354 1.18702 1.17541 0.82363 0.86668 0.81944 1.90630 1.49086 1.23448 1.83692 1.21968 0.98038 0.93903 0.94832 1.20883 1.14085 1.02654 0.89967 1.20387 0.98327 0.91999 0.86832 1.68359 1.20079 1.23413 1.08930 1.24487 0.85520 0.85520 1.03976 1.22548 1.04255 1.04823 0.89659 1.23053 0.92097 0.85548 0.99036 1.47618 1.37361 1.16614 1.06690 1.78391 1.25476 1.12238 0.95697 0.73105 0.89242 0.86733 0.90250 0.82595 0.75413 0.75753 0.77386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.56 19.25 74.32 1.43 -5.13 16 2 C -0.21 -8.55 12.02 31.12 0.37 -8.18 16 3 C 0.19 8.77 4.10 84.57 0.35 9.11 16 4 N -0.45 -24.32 2.12 -648.80 -1.38 -25.70 16 5 C -0.34 -20.99 9.32 84.09 0.78 -20.20 16 6 H 0.06 3.93 7.98 -2.91 -0.02 3.91 16 7 C 0.03 1.51 5.31 84.95 0.45 1.96 16 8 N -0.89 -53.03 13.95 21.68 0.30 -52.72 16 9 Si 0.93 42.42 25.12 68.60 1.72 44.15 16 10 H -0.23 -9.20 6.50 99.48 0.65 -8.55 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 13 C 0.53 28.93 7.58 86.77 0.66 29.59 16 14 O -0.59 -36.29 16.81 -3.99 -0.07 -36.35 16 15 C 0.07 3.17 6.66 42.00 0.28 3.45 16 16 C -0.24 -9.98 10.66 22.76 0.24 -9.73 16 17 C 0.25 8.25 7.90 132.99 1.05 9.31 16 18 N -0.50 -12.35 10.48 -192.58 -2.02 -14.37 16 19 C 0.19 2.19 11.27 85.31 0.96 3.15 16 20 C -0.19 -1.37 10.05 22.14 0.22 -1.14 16 21 C 0.13 2.10 11.30 83.30 0.94 3.04 16 22 N -0.31 -9.13 3.90 -192.51 -0.75 -9.88 16 23 N -0.29 -11.00 8.16 -48.80 -0.40 -11.39 16 24 H 0.25 5.93 7.80 -4.41 -0.03 5.90 16 25 H 0.09 4.04 3.45 -2.39 -0.01 4.03 16 26 H 0.12 4.78 5.83 -2.39 -0.01 4.76 16 27 H 0.29 15.45 8.31 -92.71 -0.77 14.68 16 28 H 0.16 6.42 8.06 -2.91 -0.02 6.39 16 29 H 0.23 0.23 8.06 -2.91 -0.02 0.21 16 30 H 0.23 -0.98 8.06 -2.91 -0.02 -1.00 16 31 H 0.21 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -87.49 282.29 6.27 -81.21 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.12 Total: 9.84 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 7.74 Total: 15.22 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -4.24 Total: -114.06 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -0.07 Total: -36.35 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.72 Total: 44.15 kcal Total: -87.49 6.27 -81.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821676334.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.543 kcal (2) G-P(sol) polarization free energy of solvation -87.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds