Wall clock time and date at job start Mon Mar 30 2020 01:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 116.99411 * 2 1 4 4 O 1.20823 * 120.00088 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99830 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.47198 * 180.02562 * 5 3 2 7 7 C 1.37095 * 119.99801 * 269.99770 * 6 5 3 8 8 H 1.07997 * 120.00133 * 201.78944 * 7 6 5 9 9 C 1.38949 * 120.00217 * 21.79697 * 7 6 5 10 10 N 1.31418 * 120.00076 * 352.77114 * 9 7 6 11 11 Si 1.86803 * 120.00223 * 172.76636 * 9 7 6 12 12 H 1.48493 * 109.47073 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46885 * 120.00149 * 11 9 7 14 14 H 1.48504 * 109.47059 * 239.99894 * 11 9 7 15 15 C 1.34773 * 120.00011 * 90.00156 * 6 5 3 16 16 O 1.21292 * 120.00296 * 5.11265 * 15 6 5 17 17 C 1.50700 * 119.99725 * 185.11227 * 15 6 5 18 18 H 1.08995 * 110.89788 * 309.75357 * 17 15 6 19 19 C 1.54768 * 111.01523 * 73.70085 * 17 15 6 20 20 C 1.51677 * 102.48427 * 142.00802 * 19 17 15 21 21 C 1.50703 * 125.77085 * 164.98512 * 20 19 17 22 22 N 1.27651 * 108.45951 * 344.72153 * 20 19 17 23 23 O 1.41377 * 113.17147 * 359.67704 * 22 20 19 24 24 H 1.08997 * 109.47597 * 299.99509 * 1 2 3 25 25 H 1.08995 * 109.47636 * 60.00074 * 1 2 3 26 26 H 1.09006 * 109.46786 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46829 * 59.99728 * 5 3 2 28 28 H 1.08997 * 109.46887 * 300.00334 * 5 3 2 29 29 H 0.96996 * 120.00508 * 185.02211 * 10 9 7 30 30 H 1.09002 * 110.80304 * 23.75985 * 19 17 15 31 31 H 1.09001 * 110.80585 * 260.25938 * 19 17 15 32 32 H 1.09004 * 109.46646 * 179.71856 * 21 20 19 33 33 H 1.09002 * 109.46655 * 299.71390 * 21 20 19 34 34 H 1.08998 * 109.47249 * 59.71946 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0612 1.1961 0.0000 4 8 1.4031 2.2093 0.0005 5 6 3.5662 1.2751 0.0006 6 7 3.9815 2.6799 0.0011 7 6 4.1763 3.3375 -1.1860 8 1 4.7990 4.2193 -1.2190 9 6 3.5725 2.8697 -2.3467 10 7 2.9328 1.7217 -2.3378 11 14 3.6697 3.8725 -3.9197 12 1 4.4406 5.1162 -3.6670 13 1 4.3480 3.0757 -4.9734 14 1 2.2983 4.2223 -4.3693 15 6 4.1721 3.3259 1.1685 16 8 4.0906 2.7210 2.2167 17 6 4.4865 4.7997 1.1715 18 1 5.3046 5.0241 0.4871 19 6 3.2301 5.6359 0.8289 20 6 3.3763 6.8371 1.7435 21 6 2.6165 8.1331 1.6237 22 7 4.2476 6.5626 2.6350 23 8 4.7861 5.2619 2.5047 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9563 0.7807 -0.8891 28 1 3.9556 0.7811 0.8908 29 1 2.5742 1.3599 -3.1632 30 1 2.3208 5.0812 1.0607 31 1 3.2421 5.9420 -0.2172 32 1 2.9251 8.8100 2.4204 33 1 2.8276 8.5899 0.6568 34 1 1.5477 7.9368 1.7074 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828269413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:26 Heat of formation + Delta-G solvation = -81.187069 kcal Electronic energy + Delta-G solvation = -21786.168451 eV Core-core repulsion = 18301.540658 eV Total energy + Delta-G solvation = -3484.627794 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07860 -39.29504 -37.94778 -35.52570 -34.69615 -33.42203 -31.75196 -30.58530 -28.39359 -28.15018 -26.35970 -25.06255 -23.29806 -20.46439 -19.54570 -19.27619 -17.49619 -16.91768 -16.48121 -15.66631 -15.45000 -15.42802 -15.10541 -14.63036 -14.35147 -13.78158 -13.66716 -13.06442 -12.90446 -12.57568 -12.51541 -12.34741 -12.10800 -11.90769 -11.50859 -11.42884 -11.30417 -11.11164 -10.88751 -10.71282 -10.51232 -10.26008 -9.89199 -9.65865 -9.21736 -9.12610 -8.54219 -8.12122 -6.58513 -4.23590 2.14893 2.95728 3.06829 3.11046 3.32082 3.34919 3.63406 3.90822 3.96837 4.39996 4.56368 4.85856 5.04369 5.14307 5.43808 5.54555 5.59138 5.65986 5.67729 5.73044 5.83166 5.89987 6.07537 6.19666 6.27351 6.39223 6.43983 6.80000 7.14015 7.36078 7.49915 7.78232 8.08669 8.81221 9.03176 9.16682 9.56078 10.42050 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.015433 B = 0.008292 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.839184 B = 3375.801210 C = 4259.744865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.372 6.372 3 C 0.492 3.508 4 O -0.516 6.516 5 C 0.154 3.846 6 N -0.425 5.425 7 C -0.332 4.332 8 H 0.103 0.897 9 C 0.045 3.955 10 N -0.880 5.880 11 Si 0.932 3.068 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.278 1.278 15 C 0.476 3.524 16 O -0.579 6.579 17 C 0.048 3.952 18 H 0.101 0.899 19 C -0.128 4.128 20 C 0.076 3.924 21 C -0.083 4.083 22 N -0.304 5.304 23 O -0.179 6.179 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.143 0.857 28 H 0.079 0.921 29 H 0.275 0.725 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.645 4.163 -1.421 5.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.289 6.289 3 C 0.334 3.666 4 O -0.402 6.402 5 C 0.029 3.971 6 N -0.146 5.146 7 C -0.459 4.459 8 H 0.120 0.880 9 C -0.159 4.159 10 N -0.520 5.520 11 Si 0.758 3.242 12 H -0.192 1.192 13 H -0.204 1.204 14 H -0.204 1.204 15 C 0.263 3.737 16 O -0.463 6.463 17 C -0.014 4.014 18 H 0.118 0.882 19 C -0.167 4.167 20 C -0.117 4.117 21 C -0.140 4.140 22 N -0.045 5.045 23 O -0.197 6.197 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.160 0.840 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.405 4.290 -0.010 4.918 hybrid contribution -0.720 0.023 -1.936 2.066 sum -3.125 4.313 -1.947 5.671 Atomic orbital electron populations 1.22930 0.78809 1.01867 1.01492 1.86465 1.21532 1.35344 1.85532 1.23917 0.92283 0.80465 0.69908 1.90482 1.66743 1.36503 1.46517 1.20706 0.87072 0.84944 1.04426 1.43245 1.57899 1.08547 1.04879 1.19706 1.28941 1.12477 0.84752 0.87985 1.25285 0.94107 0.96279 1.00187 1.69616 1.36109 1.17647 1.28638 0.85777 0.78251 0.79627 0.80506 1.19164 1.20441 1.20416 1.19621 0.82649 0.87410 0.83997 1.90594 1.56569 1.67615 1.31500 1.23252 0.97498 0.94813 0.85800 0.88182 1.22840 1.00088 0.91967 1.01834 1.26317 0.93555 0.97459 0.94396 1.20376 0.99355 0.90514 1.03792 1.77770 1.09515 0.97222 1.20013 1.91299 1.74313 1.23767 1.30332 0.93201 0.92758 0.89546 0.83968 0.90291 0.91389 0.87675 0.87282 0.90341 0.89461 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.55 101.05 1.07 1.81 16 2 O -0.37 -7.92 10.57 -39.26 -0.41 -8.33 16 3 C 0.49 11.93 5.93 36.01 0.21 12.14 16 4 O -0.52 -13.71 15.97 -18.75 -0.30 -14.00 16 5 C 0.15 3.64 5.29 -5.19 -0.03 3.62 16 6 N -0.43 -10.40 2.11 -116.10 -0.25 -10.64 16 7 C -0.33 -7.78 8.72 -14.93 -0.13 -7.91 16 8 H 0.10 2.22 6.31 -52.49 -0.33 1.89 16 9 C 0.05 1.05 5.41 -17.47 -0.09 0.96 16 10 N -0.88 -21.30 8.21 55.50 0.46 -20.84 16 11 Si 0.93 18.31 29.56 -169.99 -5.03 13.28 16 12 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 13 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 14 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 15 C 0.48 11.85 6.94 -10.99 -0.08 11.77 16 16 O -0.58 -16.10 16.15 -13.20 -0.21 -16.32 16 17 C 0.05 1.03 3.29 -26.95 -0.09 0.94 16 18 H 0.10 1.98 7.02 -51.93 -0.36 1.61 16 19 C -0.13 -2.36 6.16 -26.47 -0.16 -2.53 16 20 C 0.08 1.24 7.45 -78.57 -0.59 0.66 16 21 C -0.08 -0.88 10.49 36.01 0.38 -0.51 16 22 N -0.30 -5.96 12.45 35.65 0.44 -5.51 16 23 O -0.18 -4.11 11.84 -30.11 -0.36 -4.47 16 24 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 25 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 26 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.14 3.35 6.23 -51.93 -0.32 3.02 16 28 H 0.08 1.81 7.36 -51.93 -0.38 1.43 16 29 H 0.27 6.40 8.32 -40.82 -0.34 6.06 16 30 H 0.11 2.17 7.90 -51.93 -0.41 1.76 16 31 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 298.52 15.07 4.50 4.50 Total: -1.00 -31.90 298.52 -4.57 -36.47 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -3.91 Total: 4.91 kcal Atomic # 6 Polarization: 20.47 SS G_CDS: 0.49 Total: 20.96 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.65 Total: -37.00 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -1.28 Total: -43.12 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.90 -4.57 -36.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828269413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.718 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds