Wall clock time and date at job start Mon Mar 30 2020 01:39:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45197 * 1
3 3 C 1.34233 * 116.99411 * 2 1
4 4 O 1.20823 * 120.00088 * 0.02562 * 3 2 1
5 5 C 1.50704 * 119.99830 * 179.97438 * 3 2 1
6 6 N 1.46495 * 109.47198 * 180.02562 * 5 3 2
7 7 C 1.37095 * 119.99801 * 269.99770 * 6 5 3
8 8 H 1.07997 * 120.00133 * 201.78944 * 7 6 5
9 9 C 1.38949 * 120.00217 * 21.79697 * 7 6 5
10 10 N 1.31418 * 120.00076 * 352.77114 * 9 7 6
11 11 Si 1.86803 * 120.00223 * 172.76636 * 9 7 6
12 12 H 1.48493 * 109.47073 * 0.02562 * 11 9 7
13 13 H 1.48498 * 109.46885 * 120.00149 * 11 9 7
14 14 H 1.48504 * 109.47059 * 239.99894 * 11 9 7
15 15 C 1.34773 * 120.00011 * 90.00156 * 6 5 3
16 16 O 1.21292 * 120.00296 * 5.11265 * 15 6 5
17 17 C 1.50700 * 119.99725 * 185.11227 * 15 6 5
18 18 H 1.08995 * 110.89788 * 309.75357 * 17 15 6
19 19 C 1.54768 * 111.01523 * 73.70085 * 17 15 6
20 20 C 1.51677 * 102.48427 * 142.00802 * 19 17 15
21 21 C 1.50703 * 125.77085 * 164.98512 * 20 19 17
22 22 N 1.27651 * 108.45951 * 344.72153 * 20 19 17
23 23 O 1.41377 * 113.17147 * 359.67704 * 22 20 19
24 24 H 1.08997 * 109.47597 * 299.99509 * 1 2 3
25 25 H 1.08995 * 109.47636 * 60.00074 * 1 2 3
26 26 H 1.09006 * 109.46786 * 179.97438 * 1 2 3
27 27 H 1.09001 * 109.46829 * 59.99728 * 5 3 2
28 28 H 1.08997 * 109.46887 * 300.00334 * 5 3 2
29 29 H 0.96996 * 120.00508 * 185.02211 * 10 9 7
30 30 H 1.09002 * 110.80304 * 23.75985 * 19 17 15
31 31 H 1.09001 * 110.80585 * 260.25938 * 19 17 15
32 32 H 1.09004 * 109.46646 * 179.71856 * 21 20 19
33 33 H 1.09002 * 109.46655 * 299.71390 * 21 20 19
34 34 H 1.08998 * 109.47249 * 59.71946 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0612 1.1961 0.0000
4 8 1.4031 2.2093 0.0005
5 6 3.5662 1.2751 0.0006
6 7 3.9815 2.6799 0.0011
7 6 4.1763 3.3375 -1.1860
8 1 4.7990 4.2193 -1.2190
9 6 3.5725 2.8697 -2.3467
10 7 2.9328 1.7217 -2.3378
11 14 3.6697 3.8725 -3.9197
12 1 4.4406 5.1162 -3.6670
13 1 4.3480 3.0757 -4.9734
14 1 2.2983 4.2223 -4.3693
15 6 4.1721 3.3259 1.1685
16 8 4.0906 2.7210 2.2167
17 6 4.4865 4.7997 1.1715
18 1 5.3046 5.0241 0.4871
19 6 3.2301 5.6359 0.8289
20 6 3.3763 6.8371 1.7435
21 6 2.6165 8.1331 1.6237
22 7 4.2476 6.5626 2.6350
23 8 4.7861 5.2619 2.5047
24 1 -0.3634 0.5137 0.8900
25 1 -0.3634 0.5138 -0.8899
26 1 -0.3633 -1.0277 -0.0005
27 1 3.9563 0.7807 -0.8891
28 1 3.9556 0.7811 0.8908
29 1 2.5742 1.3599 -3.1632
30 1 2.3208 5.0812 1.0607
31 1 3.2421 5.9420 -0.2172
32 1 2.9251 8.8100 2.4204
33 1 2.8276 8.5899 0.6568
34 1 1.5477 7.9368 1.7074
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000828269413.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:39:25
Heat of formation + Delta-G solvation = -101.509596 kcal
Electronic energy + Delta-G solvation = -21787.049702 eV
Core-core repulsion = 18301.540658 eV
Total energy + Delta-G solvation = -3485.509045 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 270.109 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.76007 -41.03918 -39.72828 -37.37572 -36.58815 -34.82145 -33.60069 -32.22772
-30.08135 -29.24008 -27.93471 -26.87527 -24.95495 -22.23094 -21.31237 -20.74120
-19.24722 -18.71234 -18.27776 -17.39720 -17.16027 -17.01255 -16.73830 -16.28890
-16.03044 -15.39131 -15.17879 -14.54496 -14.40104 -14.18676 -14.07759 -13.64559
-13.46341 -13.41500 -13.06989 -13.05524 -12.89146 -12.74028 -12.54545 -12.42290
-12.02462 -11.69321 -11.59656 -11.52760 -10.98514 -10.89001 -10.30037 -10.01248
-8.37736 -6.09282 0.82426 1.32048 1.47458 1.58642 1.62677 1.74552
1.76109 2.22630 2.30481 2.83052 3.01705 3.20899 3.52099 3.66447
3.91688 4.05592 4.27600 4.33732 4.38732 4.47705 4.52801 4.68312
4.69259 4.72482 4.79555 4.85480 4.92066 5.30439 5.34130 5.53389
5.67107 6.23154 6.36251 6.97515 7.16329 7.30421 7.69968 8.62972
Molecular weight = 270.11amu
Principal moments of inertia in cm(-1)
A = 0.015433 B = 0.008292 C = 0.006572
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1813.839184 B = 3375.801210 C = 4259.744865
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 O -0.374 6.374
3 C 0.494 3.506
4 O -0.545 6.545
5 C 0.149 3.851
6 N -0.426 5.426
7 C -0.347 4.347
8 H 0.119 0.881
9 C 0.006 3.994
10 N -0.901 5.901
11 Si 0.998 3.002
12 H -0.248 1.248
13 H -0.277 1.277
14 H -0.287 1.287
15 C 0.459 3.541
16 O -0.624 6.624
17 C 0.048 3.952
18 H 0.115 0.885
19 C -0.124 4.124
20 C 0.105 3.895
21 C -0.082 4.082
22 N -0.331 5.331
23 O -0.224 6.224
24 H 0.050 0.950
25 H 0.047 0.953
26 H 0.133 0.867
27 H 0.143 0.857
28 H 0.077 0.923
29 H 0.275 0.725
30 H 0.081 0.919
31 H 0.134 0.866
32 H 0.091 0.909
33 H 0.120 0.880
34 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.406 5.922 -3.086 7.496
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 O -0.291 6.291
3 C 0.337 3.663
4 O -0.434 6.434
5 C 0.024 3.976
6 N -0.145 5.145
7 C -0.474 4.474
8 H 0.136 0.864
9 C -0.195 4.195
10 N -0.540 5.540
11 Si 0.822 3.178
12 H -0.171 1.171
13 H -0.203 1.203
14 H -0.213 1.213
15 C 0.248 3.752
16 O -0.511 6.511
17 C -0.014 4.014
18 H 0.133 0.867
19 C -0.164 4.164
20 C -0.087 4.087
21 C -0.139 4.139
22 N -0.077 5.077
23 O -0.238 6.238
24 H 0.068 0.932
25 H 0.066 0.934
26 H 0.151 0.849
27 H 0.160 0.840
28 H 0.095 0.905
29 H 0.086 0.914
30 H 0.099 0.901
31 H 0.152 0.848
32 H 0.110 0.890
33 H 0.138 0.862
34 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges -3.148 6.007 -1.684 6.988
hybrid contribution -0.609 -0.598 -1.466 1.696
sum -3.757 5.409 -3.150 7.301
Atomic orbital electron populations
1.23299 0.76145 1.04894 1.01209 1.86429 1.24095 1.33682 1.84905
1.23874 0.92376 0.80806 0.69204 1.90450 1.67374 1.37547 1.48064
1.20749 0.87440 0.85217 1.04222 1.43460 1.56986 1.08691 1.05361
1.20121 1.29672 1.13115 0.84453 0.86389 1.26158 0.93404 0.96948
1.02988 1.69705 1.36247 1.18757 1.29299 0.84773 0.77757 0.78886
0.76428 1.17081 1.20263 1.21333 1.20260 0.82598 0.88925 0.83462
1.90540 1.58831 1.68877 1.32866 1.23227 0.99280 0.92785 0.86063
0.86710 1.22841 0.97564 0.92199 1.03756 1.27125 0.91752 0.98243
0.91619 1.20716 0.99499 0.87577 1.06117 1.77814 1.12237 0.95771
1.21915 1.91262 1.75435 1.26000 1.31096 0.93162 0.93385 0.84888
0.83983 0.90473 0.91403 0.90057 0.84766 0.89011 0.86214 0.87437
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.25 10.55 113.37 1.20 2.45 16
2 O -0.37 -15.91 10.57 -51.44 -0.54 -16.45 16
3 C 0.49 24.31 5.93 71.24 0.42 24.73 16
4 O -0.55 -29.39 15.97 21.97 0.35 -29.04 16
5 C 0.15 7.26 5.29 85.64 0.45 7.71 16
6 N -0.43 -21.19 2.11 -639.62 -1.35 -22.54 16
7 C -0.35 -16.08 8.72 84.04 0.73 -15.34 16
8 H 0.12 4.95 6.31 -2.91 -0.02 4.93 16
9 C 0.01 0.29 5.41 84.93 0.46 0.75 16
10 N -0.90 -43.28 8.21 21.66 0.18 -43.10 16
11 Si 1.00 35.94 29.56 68.60 2.03 37.97 16
12 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16
13 H -0.28 -9.87 7.11 99.48 0.71 -9.16 16
14 H -0.29 -10.73 7.11 99.48 0.71 -10.02 16
15 C 0.46 23.51 6.94 87.66 0.61 24.12 16
16 O -0.62 -36.30 16.15 14.86 0.24 -36.06 16
17 C 0.05 2.07 3.29 30.45 0.10 2.17 16
18 H 0.12 4.49 7.02 -2.39 -0.02 4.48 16
19 C -0.12 -4.45 6.16 30.76 0.19 -4.27 16
20 C 0.11 3.22 7.45 46.89 0.35 3.57 16
21 C -0.08 -1.41 10.49 71.24 0.75 -0.66 16
22 N -0.33 -12.81 12.45 -40.62 -0.51 -13.32 16
23 O -0.22 -10.51 11.84 -20.36 -0.24 -10.75 16
24 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16
25 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16
26 H 0.13 3.09 8.14 -2.38 -0.02 3.07 16
27 H 0.14 6.85 6.23 -2.39 -0.01 6.84 16
28 H 0.08 3.71 7.36 -2.39 -0.02 3.69 16
29 H 0.28 12.68 8.32 -92.71 -0.77 11.90 16
30 H 0.08 3.37 7.90 -2.39 -0.02 3.35 16
31 H 0.13 4.08 8.14 -2.39 -0.02 4.07 16
32 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16
33 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16
34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16
Total: -1.00 -71.32 298.52 6.54 -64.78
By element:
Atomic # 1 Polarization: 22.17 SS G_CDS: 1.13 Total: 23.30 kcal
Atomic # 6 Polarization: 39.97 SS G_CDS: 5.26 Total: 45.23 kcal
Atomic # 7 Polarization: -77.28 SS G_CDS: -1.68 Total: -78.96 kcal
Atomic # 8 Polarization: -92.11 SS G_CDS: -0.19 Total: -92.31 kcal
Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal
Total: -71.32 6.54 -64.78 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000828269413.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.734 kcal
(2) G-P(sol) polarization free energy of solvation -71.316 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.050 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.541 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.775 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.510 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds