Wall clock time and date at job start Mon Mar 30 2020 01:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 116.99411 * 2 1 4 4 O 1.20823 * 120.00088 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99830 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.47198 * 180.02562 * 5 3 2 7 7 C 1.37095 * 119.99801 * 269.99770 * 6 5 3 8 8 H 1.07997 * 120.00133 * 201.78944 * 7 6 5 9 9 C 1.38949 * 120.00217 * 21.79697 * 7 6 5 10 10 N 1.31418 * 120.00076 * 352.77114 * 9 7 6 11 11 Si 1.86803 * 120.00223 * 172.76636 * 9 7 6 12 12 H 1.48493 * 109.47073 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46885 * 120.00149 * 11 9 7 14 14 H 1.48504 * 109.47059 * 239.99894 * 11 9 7 15 15 C 1.34773 * 120.00011 * 90.00156 * 6 5 3 16 16 O 1.21292 * 120.00296 * 5.11265 * 15 6 5 17 17 C 1.50700 * 119.99725 * 185.11227 * 15 6 5 18 18 H 1.08995 * 110.89788 * 309.75357 * 17 15 6 19 19 C 1.54768 * 111.01523 * 73.70085 * 17 15 6 20 20 C 1.51677 * 102.48427 * 142.00802 * 19 17 15 21 21 C 1.50703 * 125.77085 * 164.98512 * 20 19 17 22 22 N 1.27651 * 108.45951 * 344.72153 * 20 19 17 23 23 O 1.41377 * 113.17147 * 359.67704 * 22 20 19 24 24 H 1.08997 * 109.47597 * 299.99509 * 1 2 3 25 25 H 1.08995 * 109.47636 * 60.00074 * 1 2 3 26 26 H 1.09006 * 109.46786 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46829 * 59.99728 * 5 3 2 28 28 H 1.08997 * 109.46887 * 300.00334 * 5 3 2 29 29 H 0.96996 * 120.00508 * 185.02211 * 10 9 7 30 30 H 1.09002 * 110.80304 * 23.75985 * 19 17 15 31 31 H 1.09001 * 110.80585 * 260.25938 * 19 17 15 32 32 H 1.09004 * 109.46646 * 179.71856 * 21 20 19 33 33 H 1.09002 * 109.46655 * 299.71390 * 21 20 19 34 34 H 1.08998 * 109.47249 * 59.71946 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0612 1.1961 0.0000 4 8 1.4031 2.2093 0.0005 5 6 3.5662 1.2751 0.0006 6 7 3.9815 2.6799 0.0011 7 6 4.1763 3.3375 -1.1860 8 1 4.7990 4.2193 -1.2190 9 6 3.5725 2.8697 -2.3467 10 7 2.9328 1.7217 -2.3378 11 14 3.6697 3.8725 -3.9197 12 1 4.4406 5.1162 -3.6670 13 1 4.3480 3.0757 -4.9734 14 1 2.2983 4.2223 -4.3693 15 6 4.1721 3.3259 1.1685 16 8 4.0906 2.7210 2.2167 17 6 4.4865 4.7997 1.1715 18 1 5.3046 5.0241 0.4871 19 6 3.2301 5.6359 0.8289 20 6 3.3763 6.8371 1.7435 21 6 2.6165 8.1331 1.6237 22 7 4.2476 6.5626 2.6350 23 8 4.7861 5.2619 2.5047 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9563 0.7807 -0.8891 28 1 3.9556 0.7811 0.8908 29 1 2.5742 1.3599 -3.1632 30 1 2.3208 5.0812 1.0607 31 1 3.2421 5.9420 -0.2172 32 1 2.9251 8.8100 2.4204 33 1 2.8276 8.5899 0.6568 34 1 1.5477 7.9368 1.7074 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828269413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:25 Heat of formation + Delta-G solvation = -101.509596 kcal Electronic energy + Delta-G solvation = -21787.049702 eV Core-core repulsion = 18301.540658 eV Total energy + Delta-G solvation = -3485.509045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.76007 -41.03918 -39.72828 -37.37572 -36.58815 -34.82145 -33.60069 -32.22772 -30.08135 -29.24008 -27.93471 -26.87527 -24.95495 -22.23094 -21.31237 -20.74120 -19.24722 -18.71234 -18.27776 -17.39720 -17.16027 -17.01255 -16.73830 -16.28890 -16.03044 -15.39131 -15.17879 -14.54496 -14.40104 -14.18676 -14.07759 -13.64559 -13.46341 -13.41500 -13.06989 -13.05524 -12.89146 -12.74028 -12.54545 -12.42290 -12.02462 -11.69321 -11.59656 -11.52760 -10.98514 -10.89001 -10.30037 -10.01248 -8.37736 -6.09282 0.82426 1.32048 1.47458 1.58642 1.62677 1.74552 1.76109 2.22630 2.30481 2.83052 3.01705 3.20899 3.52099 3.66447 3.91688 4.05592 4.27600 4.33732 4.38732 4.47705 4.52801 4.68312 4.69259 4.72482 4.79555 4.85480 4.92066 5.30439 5.34130 5.53389 5.67107 6.23154 6.36251 6.97515 7.16329 7.30421 7.69968 8.62972 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.015433 B = 0.008292 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.839184 B = 3375.801210 C = 4259.744865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.374 6.374 3 C 0.494 3.506 4 O -0.545 6.545 5 C 0.149 3.851 6 N -0.426 5.426 7 C -0.347 4.347 8 H 0.119 0.881 9 C 0.006 3.994 10 N -0.901 5.901 11 Si 0.998 3.002 12 H -0.248 1.248 13 H -0.277 1.277 14 H -0.287 1.287 15 C 0.459 3.541 16 O -0.624 6.624 17 C 0.048 3.952 18 H 0.115 0.885 19 C -0.124 4.124 20 C 0.105 3.895 21 C -0.082 4.082 22 N -0.331 5.331 23 O -0.224 6.224 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.133 0.867 27 H 0.143 0.857 28 H 0.077 0.923 29 H 0.275 0.725 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 5.922 -3.086 7.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.291 6.291 3 C 0.337 3.663 4 O -0.434 6.434 5 C 0.024 3.976 6 N -0.145 5.145 7 C -0.474 4.474 8 H 0.136 0.864 9 C -0.195 4.195 10 N -0.540 5.540 11 Si 0.822 3.178 12 H -0.171 1.171 13 H -0.203 1.203 14 H -0.213 1.213 15 C 0.248 3.752 16 O -0.511 6.511 17 C -0.014 4.014 18 H 0.133 0.867 19 C -0.164 4.164 20 C -0.087 4.087 21 C -0.139 4.139 22 N -0.077 5.077 23 O -0.238 6.238 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.151 0.849 27 H 0.160 0.840 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.152 0.848 32 H 0.110 0.890 33 H 0.138 0.862 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.148 6.007 -1.684 6.988 hybrid contribution -0.609 -0.598 -1.466 1.696 sum -3.757 5.409 -3.150 7.301 Atomic orbital electron populations 1.23299 0.76145 1.04894 1.01209 1.86429 1.24095 1.33682 1.84905 1.23874 0.92376 0.80806 0.69204 1.90450 1.67374 1.37547 1.48064 1.20749 0.87440 0.85217 1.04222 1.43460 1.56986 1.08691 1.05361 1.20121 1.29672 1.13115 0.84453 0.86389 1.26158 0.93404 0.96948 1.02988 1.69705 1.36247 1.18757 1.29299 0.84773 0.77757 0.78886 0.76428 1.17081 1.20263 1.21333 1.20260 0.82598 0.88925 0.83462 1.90540 1.58831 1.68877 1.32866 1.23227 0.99280 0.92785 0.86063 0.86710 1.22841 0.97564 0.92199 1.03756 1.27125 0.91752 0.98243 0.91619 1.20716 0.99499 0.87577 1.06117 1.77814 1.12237 0.95771 1.21915 1.91262 1.75435 1.26000 1.31096 0.93162 0.93385 0.84888 0.83983 0.90473 0.91403 0.90057 0.84766 0.89011 0.86214 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.25 10.55 113.37 1.20 2.45 16 2 O -0.37 -15.91 10.57 -51.44 -0.54 -16.45 16 3 C 0.49 24.31 5.93 71.24 0.42 24.73 16 4 O -0.55 -29.39 15.97 21.97 0.35 -29.04 16 5 C 0.15 7.26 5.29 85.64 0.45 7.71 16 6 N -0.43 -21.19 2.11 -639.62 -1.35 -22.54 16 7 C -0.35 -16.08 8.72 84.04 0.73 -15.34 16 8 H 0.12 4.95 6.31 -2.91 -0.02 4.93 16 9 C 0.01 0.29 5.41 84.93 0.46 0.75 16 10 N -0.90 -43.28 8.21 21.66 0.18 -43.10 16 11 Si 1.00 35.94 29.56 68.60 2.03 37.97 16 12 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 13 H -0.28 -9.87 7.11 99.48 0.71 -9.16 16 14 H -0.29 -10.73 7.11 99.48 0.71 -10.02 16 15 C 0.46 23.51 6.94 87.66 0.61 24.12 16 16 O -0.62 -36.30 16.15 14.86 0.24 -36.06 16 17 C 0.05 2.07 3.29 30.45 0.10 2.17 16 18 H 0.12 4.49 7.02 -2.39 -0.02 4.48 16 19 C -0.12 -4.45 6.16 30.76 0.19 -4.27 16 20 C 0.11 3.22 7.45 46.89 0.35 3.57 16 21 C -0.08 -1.41 10.49 71.24 0.75 -0.66 16 22 N -0.33 -12.81 12.45 -40.62 -0.51 -13.32 16 23 O -0.22 -10.51 11.84 -20.36 -0.24 -10.75 16 24 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 25 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 26 H 0.13 3.09 8.14 -2.38 -0.02 3.07 16 27 H 0.14 6.85 6.23 -2.39 -0.01 6.84 16 28 H 0.08 3.71 7.36 -2.39 -0.02 3.69 16 29 H 0.28 12.68 8.32 -92.71 -0.77 11.90 16 30 H 0.08 3.37 7.90 -2.39 -0.02 3.35 16 31 H 0.13 4.08 8.14 -2.39 -0.02 4.07 16 32 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -71.32 298.52 6.54 -64.78 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 1.13 Total: 23.30 kcal Atomic # 6 Polarization: 39.97 SS G_CDS: 5.26 Total: 45.23 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -1.68 Total: -78.96 kcal Atomic # 8 Polarization: -92.11 SS G_CDS: -0.19 Total: -92.31 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Total: -71.32 6.54 -64.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828269413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.734 kcal (2) G-P(sol) polarization free energy of solvation -71.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds