Wall clock time and date at job start Mon Mar 30 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 116.99943 * 2 1 4 4 O 1.20827 * 120.00008 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00442 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47443 * 180.02562 * 5 3 2 7 7 C 1.37102 * 119.99926 * 264.25963 * 6 5 3 8 8 H 1.07998 * 119.99550 * 194.27152 * 7 6 5 9 9 C 1.38949 * 120.00239 * 14.27245 * 7 6 5 10 10 N 1.31420 * 119.99705 * 22.96625 * 9 7 6 11 11 Si 1.86793 * 120.00119 * 202.96816 * 9 7 6 12 12 H 1.48500 * 109.46980 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47285 * 119.99971 * 11 9 7 14 14 H 1.48505 * 109.46996 * 240.00095 * 11 9 7 15 15 C 1.34772 * 119.99711 * 84.25933 * 6 5 3 16 16 O 1.21291 * 120.00527 * 359.97438 * 15 6 5 17 17 C 1.50701 * 120.00075 * 180.02562 * 15 6 5 18 18 H 1.09008 * 110.91966 * 58.91707 * 17 15 6 19 19 C 1.54775 * 111.01084 * 295.00229 * 17 15 6 20 20 C 1.51684 * 102.47735 * 217.98602 * 19 17 15 21 21 C 1.50692 * 125.76869 * 195.25533 * 20 19 17 22 22 N 1.27641 * 108.46233 * 15.27771 * 20 19 17 23 23 O 1.41381 * 113.17470 * 0.32505 * 22 20 19 24 24 H 1.09006 * 109.46877 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47221 * 299.99269 * 1 2 3 26 26 H 1.08998 * 109.47181 * 59.99984 * 1 2 3 27 27 H 1.09007 * 109.46953 * 60.00513 * 5 3 2 28 28 H 1.08997 * 109.47195 * 300.00685 * 5 3 2 29 29 H 0.96999 * 119.99472 * 179.97438 * 10 9 7 30 30 H 1.08997 * 110.80788 * 99.73951 * 19 17 15 31 31 H 1.09003 * 110.80173 * 336.23431 * 19 17 15 32 32 H 1.09006 * 109.47177 * 90.00339 * 21 20 19 33 33 H 1.08993 * 109.47651 * 209.99924 * 21 20 19 34 34 H 1.08998 * 109.47441 * 329.99986 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 0.0011 7 6 4.2903 3.3039 -1.1800 8 1 4.8108 4.2501 -1.1708 9 6 3.9335 2.7189 -2.3888 10 7 2.9479 1.8506 -2.4330 11 14 4.8547 3.1665 -3.9510 12 1 5.9122 4.1599 -3.6346 13 1 5.4767 1.9466 -4.5256 14 1 3.9071 3.7493 -4.9347 15 6 4.0603 3.3588 1.1626 16 8 3.7867 2.8070 2.2075 17 6 4.4869 4.8042 1.1632 18 1 3.8155 5.4085 0.5530 19 6 5.9523 4.9504 0.6868 20 6 6.4804 6.0528 1.5849 21 6 7.7479 6.8374 1.3642 22 7 5.6699 6.2033 2.5595 23 8 4.5679 5.3191 2.5082 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9564 0.7808 -0.8893 28 1 3.9557 0.7810 0.8907 29 1 2.6986 1.4426 -3.2769 30 1 5.9909 5.2519 -0.3599 31 1 6.5049 4.0242 0.8448 32 1 7.5281 7.7220 0.7663 33 1 8.1588 7.1424 2.3265 34 1 8.4735 6.2156 0.8399 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828269414.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:28 Heat of formation + Delta-G solvation = -79.998035 kcal Electronic energy + Delta-G solvation = -21604.592942 eV Core-core repulsion = 18120.016709 eV Total energy + Delta-G solvation = -3484.576233 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.13705 -39.31129 -37.93744 -35.49091 -34.75603 -33.44589 -31.80956 -30.73898 -28.38615 -28.15956 -26.29709 -25.20109 -23.28604 -20.54404 -19.55215 -19.27390 -17.55239 -16.75410 -16.60170 -15.69629 -15.58715 -15.26823 -15.18940 -14.70690 -14.42549 -13.92694 -13.48940 -13.13246 -12.95973 -12.59455 -12.55725 -12.43419 -12.14547 -11.92178 -11.61919 -11.41664 -11.36075 -11.13966 -10.89380 -10.71169 -10.53195 -10.13298 -9.87356 -9.71301 -9.21943 -9.11455 -8.56893 -8.13560 -6.66820 -4.14350 2.10375 2.94171 3.07339 3.11399 3.20054 3.49418 3.61227 3.81053 3.96362 4.34338 4.49398 4.80527 5.00061 5.07339 5.35493 5.48423 5.53482 5.62617 5.67159 5.75560 5.88543 5.92660 5.96681 6.12056 6.15932 6.30164 6.36950 6.53998 7.17273 7.32830 7.45869 7.74768 8.05844 8.80891 9.01586 9.17388 9.57975 10.40284 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016959 B = 0.007874 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.668085 B = 3555.273080 C = 4941.404007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.374 6.374 3 C 0.483 3.517 4 O -0.499 6.499 5 C 0.157 3.843 6 N -0.422 5.422 7 C -0.349 4.349 8 H 0.109 0.891 9 C 0.041 3.959 10 N -0.861 5.861 11 Si 0.924 3.076 12 H -0.266 1.266 13 H -0.277 1.277 14 H -0.281 1.281 15 C 0.473 3.527 16 O -0.579 6.579 17 C 0.049 3.951 18 H 0.106 0.894 19 C -0.135 4.135 20 C 0.073 3.927 21 C -0.082 4.082 22 N -0.303 5.303 23 O -0.175 6.175 24 H 0.086 0.914 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.128 0.872 28 H 0.084 0.916 29 H 0.275 0.725 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.208 1.390 -1.528 6.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.292 6.292 3 C 0.325 3.675 4 O -0.384 6.384 5 C 0.031 3.969 6 N -0.142 5.142 7 C -0.476 4.476 8 H 0.126 0.874 9 C -0.165 4.165 10 N -0.498 5.498 11 Si 0.750 3.250 12 H -0.190 1.190 13 H -0.202 1.202 14 H -0.207 1.207 15 C 0.260 3.740 16 O -0.463 6.463 17 C -0.013 4.013 18 H 0.123 0.877 19 C -0.175 4.175 20 C -0.121 4.121 21 C -0.140 4.140 22 N -0.044 5.044 23 O -0.194 6.194 24 H 0.105 0.895 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.353 1.781 -0.078 5.642 hybrid contribution -0.097 -0.251 -1.970 1.989 sum 5.256 1.530 -2.048 5.845 Atomic orbital electron populations 1.22954 0.78546 1.01908 1.01721 1.86450 1.21809 1.35316 1.85628 1.23936 0.92272 0.80649 0.70685 1.90529 1.66509 1.36393 1.44971 1.20551 0.87381 0.84998 1.03959 1.43328 1.56922 1.08221 1.05710 1.19831 1.37438 1.08149 0.82144 0.87366 1.25237 0.94800 0.96887 0.99593 1.69907 1.22777 1.29090 1.28021 0.85921 0.79479 0.78715 0.80899 1.19028 1.20224 1.20704 1.19511 0.83366 0.86737 0.84353 1.90596 1.54526 1.69249 1.31923 1.23256 0.96847 0.96112 0.85078 0.87689 1.23108 0.94043 0.98372 1.01950 1.26310 0.96339 0.95241 0.94166 1.20367 0.91010 0.99065 1.03555 1.77767 0.97292 1.09127 1.20200 1.91333 1.41806 1.58411 1.27838 0.89504 0.93050 0.92575 0.85416 0.89782 0.91479 0.86990 0.87806 0.89503 0.90220 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.82 16 2 O -0.37 -8.06 10.57 -39.25 -0.41 -8.48 16 3 C 0.48 11.96 6.19 36.00 0.22 12.18 16 4 O -0.50 -13.93 15.88 -18.75 -0.30 -14.23 16 5 C 0.16 3.68 5.14 -5.19 -0.03 3.65 16 6 N -0.42 -10.27 2.18 -116.10 -0.25 -10.52 16 7 C -0.35 -8.13 8.85 -14.93 -0.13 -8.26 16 8 H 0.11 2.29 4.59 -52.49 -0.24 2.04 16 9 C 0.04 0.95 4.87 -17.46 -0.08 0.86 16 10 N -0.86 -21.22 9.36 55.50 0.52 -20.70 16 11 Si 0.92 17.76 29.61 -169.99 -5.03 12.72 16 12 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 13 H -0.28 -5.31 7.11 56.52 0.40 -4.90 16 14 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 15 C 0.47 11.81 6.82 -10.99 -0.07 11.73 16 16 O -0.58 -16.21 16.27 -13.27 -0.22 -16.43 16 17 C 0.05 1.05 3.27 -26.95 -0.09 0.96 16 18 H 0.11 2.23 8.08 -51.92 -0.42 1.81 16 19 C -0.14 -2.26 5.43 -26.46 -0.14 -2.40 16 20 C 0.07 1.11 7.45 -78.58 -0.59 0.52 16 21 C -0.08 -0.79 10.49 36.00 0.38 -0.41 16 22 N -0.30 -5.78 12.45 35.64 0.44 -5.34 16 23 O -0.18 -4.04 11.83 -30.18 -0.36 -4.40 16 24 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.05 0.89 8.13 -51.93 -0.42 0.46 16 26 H 0.06 1.01 8.13 -51.93 -0.42 0.58 16 27 H 0.13 2.91 6.26 -51.93 -0.32 2.59 16 28 H 0.08 1.86 7.60 -51.93 -0.39 1.46 16 29 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 30 H 0.11 1.64 6.61 -51.93 -0.34 1.29 16 31 H 0.10 1.73 7.90 -51.93 -0.41 1.32 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 296.71 15.07 4.47 4.47 Total: -1.00 -33.19 296.71 -4.41 -37.60 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.80 Total: 4.63 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: 0.53 Total: 20.66 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.71 Total: -36.56 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -1.29 Total: -43.53 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.19 -4.41 -37.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828269414.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.395 kcal (2) G-P(sol) polarization free energy of solvation -33.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds