Wall clock time and date at job start Mon Mar 30 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 116.99943 * 2 1 4 4 O 1.20827 * 120.00008 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00442 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47443 * 180.02562 * 5 3 2 7 7 C 1.37102 * 119.99926 * 264.25963 * 6 5 3 8 8 H 1.07998 * 119.99550 * 194.27152 * 7 6 5 9 9 C 1.38949 * 120.00239 * 14.27245 * 7 6 5 10 10 N 1.31420 * 119.99705 * 22.96625 * 9 7 6 11 11 Si 1.86793 * 120.00119 * 202.96816 * 9 7 6 12 12 H 1.48500 * 109.46980 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47285 * 119.99971 * 11 9 7 14 14 H 1.48505 * 109.46996 * 240.00095 * 11 9 7 15 15 C 1.34772 * 119.99711 * 84.25933 * 6 5 3 16 16 O 1.21291 * 120.00527 * 359.97438 * 15 6 5 17 17 C 1.50701 * 120.00075 * 180.02562 * 15 6 5 18 18 H 1.09008 * 110.91966 * 58.91707 * 17 15 6 19 19 C 1.54775 * 111.01084 * 295.00229 * 17 15 6 20 20 C 1.51684 * 102.47735 * 217.98602 * 19 17 15 21 21 C 1.50692 * 125.76869 * 195.25533 * 20 19 17 22 22 N 1.27641 * 108.46233 * 15.27771 * 20 19 17 23 23 O 1.41381 * 113.17470 * 0.32505 * 22 20 19 24 24 H 1.09006 * 109.46877 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47221 * 299.99269 * 1 2 3 26 26 H 1.08998 * 109.47181 * 59.99984 * 1 2 3 27 27 H 1.09007 * 109.46953 * 60.00513 * 5 3 2 28 28 H 1.08997 * 109.47195 * 300.00685 * 5 3 2 29 29 H 0.96999 * 119.99472 * 179.97438 * 10 9 7 30 30 H 1.08997 * 110.80788 * 99.73951 * 19 17 15 31 31 H 1.09003 * 110.80173 * 336.23431 * 19 17 15 32 32 H 1.09006 * 109.47177 * 90.00339 * 21 20 19 33 33 H 1.08993 * 109.47651 * 209.99924 * 21 20 19 34 34 H 1.08998 * 109.47441 * 329.99986 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 0.0011 7 6 4.2903 3.3039 -1.1800 8 1 4.8108 4.2501 -1.1708 9 6 3.9335 2.7189 -2.3888 10 7 2.9479 1.8506 -2.4330 11 14 4.8547 3.1665 -3.9510 12 1 5.9122 4.1599 -3.6346 13 1 5.4767 1.9466 -4.5256 14 1 3.9071 3.7493 -4.9347 15 6 4.0603 3.3588 1.1626 16 8 3.7867 2.8070 2.2075 17 6 4.4869 4.8042 1.1632 18 1 3.8155 5.4085 0.5530 19 6 5.9523 4.9504 0.6868 20 6 6.4804 6.0528 1.5849 21 6 7.7479 6.8374 1.3642 22 7 5.6699 6.2033 2.5595 23 8 4.5679 5.3191 2.5082 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9564 0.7808 -0.8893 28 1 3.9557 0.7810 0.8907 29 1 2.6986 1.4426 -3.2769 30 1 5.9909 5.2519 -0.3599 31 1 6.5049 4.0242 0.8448 32 1 7.5281 7.7220 0.7663 33 1 8.1588 7.1424 2.3265 34 1 8.4735 6.2156 0.8399 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828269414.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:28 Heat of formation + Delta-G solvation = -102.187942 kcal Electronic energy + Delta-G solvation = -21605.555169 eV Core-core repulsion = 18120.016709 eV Total energy + Delta-G solvation = -3485.538460 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.78329 -41.07317 -39.70277 -37.36447 -36.66704 -34.78834 -33.64400 -32.33814 -30.03162 -29.19885 -27.89093 -26.99233 -24.90026 -22.32082 -21.24296 -20.75709 -19.27445 -18.55241 -18.38326 -17.42043 -17.21971 -16.93696 -16.80196 -16.35446 -16.07623 -15.37750 -15.09505 -14.52412 -14.39800 -14.19552 -14.12059 -13.62067 -13.53877 -13.41549 -13.19379 -12.99874 -12.91824 -12.61540 -12.55465 -12.33106 -11.98665 -11.64706 -11.61878 -11.51025 -11.00515 -10.84636 -10.31430 -10.01312 -8.44273 -5.99239 0.87308 1.31209 1.52717 1.57372 1.65958 1.69203 1.86425 2.14560 2.33148 2.79342 3.05838 3.15711 3.51022 3.66914 3.89949 4.13183 4.24689 4.31090 4.37080 4.43177 4.49771 4.64281 4.68252 4.68840 4.76592 4.85130 4.89142 5.35124 5.40415 5.51325 5.61640 6.23274 6.39089 6.98361 7.11460 7.32359 7.73017 8.63274 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016959 B = 0.007874 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.668085 B = 3555.273080 C = 4941.404007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.374 6.374 3 C 0.484 3.516 4 O -0.540 6.540 5 C 0.152 3.848 6 N -0.422 5.422 7 C -0.366 4.366 8 H 0.130 0.870 9 C -0.001 4.001 10 N -0.892 5.892 11 Si 0.997 3.003 12 H -0.240 1.240 13 H -0.275 1.275 14 H -0.293 1.293 15 C 0.455 3.545 16 O -0.625 6.625 17 C 0.046 3.954 18 H 0.099 0.901 19 C -0.129 4.129 20 C 0.106 3.894 21 C -0.081 4.081 22 N -0.338 5.338 23 O -0.227 6.227 24 H 0.137 0.863 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.134 0.866 28 H 0.090 0.910 29 H 0.275 0.725 30 H 0.141 0.859 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.521 2.164 -3.406 9.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.291 6.291 3 C 0.327 3.673 4 O -0.428 6.428 5 C 0.026 3.974 6 N -0.140 5.140 7 C -0.492 4.492 8 H 0.147 0.853 9 C -0.204 4.204 10 N -0.529 5.529 11 Si 0.819 3.181 12 H -0.162 1.162 13 H -0.200 1.200 14 H -0.219 1.219 15 C 0.243 3.757 16 O -0.513 6.513 17 C -0.016 4.016 18 H 0.116 0.884 19 C -0.168 4.168 20 C -0.087 4.087 21 C -0.139 4.139 22 N -0.084 5.084 23 O -0.241 6.241 24 H 0.155 0.845 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.151 0.849 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.159 0.841 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.654 2.521 -1.961 8.294 hybrid contribution -0.849 -0.551 -1.440 1.760 sum 6.806 1.970 -3.401 7.859 Atomic orbital electron populations 1.23322 0.76057 1.05027 1.01214 1.86421 1.24220 1.33555 1.84917 1.24124 0.92734 0.80849 0.69549 1.90498 1.67439 1.37808 1.47091 1.20666 0.87074 0.85284 1.04352 1.43580 1.55899 1.08430 1.06124 1.20397 1.37756 1.09169 0.81852 0.85259 1.26233 0.94950 0.96530 1.02643 1.70015 1.23971 1.30139 1.28812 0.84825 0.78326 0.78913 0.76015 1.16212 1.20046 1.21939 1.20176 0.83425 0.88154 0.83915 1.90537 1.56776 1.70588 1.33389 1.23152 0.99730 0.93371 0.85322 0.88358 1.23139 0.90806 0.99229 1.03638 1.27202 0.96604 0.93403 0.91444 1.20721 0.88371 0.99703 1.05071 1.77825 0.97762 1.10190 1.22654 1.91295 1.44403 1.59780 1.28632 0.84542 0.93292 0.93416 0.84883 0.89181 0.91491 0.84093 0.87567 0.86782 0.89213 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.28 10.56 113.37 1.20 2.48 16 2 O -0.37 -16.21 10.57 -51.39 -0.54 -16.75 16 3 C 0.48 24.56 6.19 71.23 0.44 25.00 16 4 O -0.54 -31.15 15.88 21.96 0.35 -30.81 16 5 C 0.15 7.29 5.14 85.63 0.44 7.73 16 6 N -0.42 -20.86 2.18 -639.60 -1.39 -22.25 16 7 C -0.37 -16.75 8.85 84.04 0.74 -16.01 16 8 H 0.13 5.18 4.59 -2.91 -0.01 5.17 16 9 C 0.00 -0.03 4.87 84.92 0.41 0.39 16 10 N -0.89 -43.91 9.36 21.66 0.20 -43.71 16 11 Si 1.00 34.66 29.61 68.60 2.03 36.69 16 12 H -0.24 -7.27 7.11 99.48 0.71 -6.56 16 13 H -0.28 -9.46 7.11 99.48 0.71 -8.75 16 14 H -0.29 -10.73 7.11 99.48 0.71 -10.02 16 15 C 0.45 23.41 6.82 87.66 0.60 24.01 16 16 O -0.63 -36.73 16.27 14.92 0.24 -36.49 16 17 C 0.05 2.01 3.27 30.45 0.10 2.11 16 18 H 0.10 4.29 8.08 -2.38 -0.02 4.27 16 19 C -0.13 -4.04 5.43 30.77 0.17 -3.87 16 20 C 0.11 2.95 7.45 46.90 0.35 3.30 16 21 C -0.08 -1.17 10.49 71.23 0.75 -0.42 16 22 N -0.34 -12.77 12.45 -40.63 -0.51 -13.27 16 23 O -0.23 -10.84 11.83 -20.31 -0.24 -11.08 16 24 H 0.14 3.28 8.14 -2.38 -0.02 3.26 16 25 H 0.05 1.69 8.13 -2.39 -0.02 1.68 16 26 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 27 H 0.13 6.16 6.26 -2.38 -0.01 6.15 16 28 H 0.09 4.13 7.60 -2.39 -0.02 4.11 16 29 H 0.28 12.86 8.31 -92.71 -0.77 12.09 16 30 H 0.14 3.58 6.61 -2.39 -0.02 3.56 16 31 H 0.11 3.35 7.90 -2.39 -0.02 3.33 16 32 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -76.07 296.71 6.47 -69.60 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 1.13 Total: 23.36 kcal Atomic # 6 Polarization: 39.51 SS G_CDS: 5.20 Total: 44.71 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -1.70 Total: -79.23 kcal Atomic # 8 Polarization: -94.93 SS G_CDS: -0.19 Total: -95.12 kcal Atomic # 14 Polarization: 34.66 SS G_CDS: 2.03 Total: 36.69 kcal Total: -76.07 6.47 -69.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828269414.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.590 kcal (2) G-P(sol) polarization free energy of solvation -76.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds