Wall clock time and date at job start Mon Mar 30 2020 01:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48510 * 109.46567 * 269.99706 * 3 2 1 5 5 H 1.48490 * 109.47127 * 29.99351 * 3 2 1 6 6 H 1.48497 * 109.47419 * 150.00029 * 3 2 1 7 7 C 1.38956 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00125 * 204.66397 * 7 2 1 9 9 N 1.37102 * 119.99529 * 24.66351 * 7 2 1 10 10 C 1.46498 * 119.99804 * 12.92555 * 9 7 2 11 11 C 1.50701 * 109.47018 * 264.77662 * 10 9 7 12 12 O 1.20825 * 119.99857 * 0.02562 * 11 10 9 13 13 O 1.34229 * 119.99926 * 180.02562 * 11 10 9 14 14 C 1.34776 * 119.99923 * 192.92240 * 9 7 2 15 15 O 1.21287 * 120.00066 * 184.89109 * 14 9 7 16 16 C 1.50702 * 119.99624 * 4.88893 * 14 9 7 17 17 H 1.09001 * 109.67292 * 40.25557 * 16 14 9 18 18 C 1.53349 * 109.67058 * 160.78086 * 16 14 9 19 19 C 1.52933 * 108.66512 * 187.27975 * 18 16 14 20 20 N 1.45754 * 110.47761 * 309.22021 * 19 18 16 21 21 C 1.33352 * 124.10750 * 19.11096 * 20 19 18 22 22 O 1.21279 * 118.24495 * 177.73345 * 21 20 19 23 23 C 1.50180 * 123.50813 * 357.75405 * 21 20 19 24 24 H 0.96998 * 120.00266 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46703 * 144.78337 * 10 9 7 26 26 H 1.08997 * 109.47698 * 24.78377 * 10 9 7 27 27 H 0.96701 * 116.99859 * 180.02562 * 13 11 10 28 28 H 1.09004 * 109.60561 * 307.02241 * 18 16 14 29 29 H 1.09002 * 109.60157 * 67.50539 * 18 16 14 30 30 H 1.08995 * 109.29489 * 188.91866 * 19 18 16 31 31 H 1.08999 * 109.31639 * 69.53319 * 19 18 16 32 32 H 0.96999 * 117.94632 * 199.09056 * 20 19 18 33 33 H 1.08992 * 109.39801 * 257.45401 * 23 21 20 34 34 H 1.08996 * 109.39901 * 137.71311 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0463 -1.4002 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0149 -1.2458 0.3908 9 7 1.4172 -2.3367 -0.4944 10 6 0.1816 -2.2367 -1.2751 11 6 -1.0035 -2.4528 -0.3696 12 8 -0.8334 -2.6677 0.8072 13 8 -2.2480 -2.4064 -0.8703 14 6 1.9723 -3.5428 -0.2629 15 8 1.4998 -4.5361 -0.7739 16 6 3.1802 -3.6572 0.6310 17 1 3.0677 -2.9916 1.4868 18 6 3.3274 -5.1040 1.1173 19 6 4.4440 -5.1584 2.1609 20 7 5.6481 -4.5125 1.6535 21 6 5.6626 -3.6533 0.6338 22 8 6.7203 -3.1459 0.3259 23 6 4.4393 -3.2800 -0.1533 24 1 -0.4850 0.8400 -0.0004 25 1 0.1839 -2.9955 -2.0577 26 1 0.1170 -1.2475 -1.7283 27 1 -2.9763 -2.5507 -0.2507 28 1 2.3911 -5.4361 1.5660 29 1 3.5812 -5.7487 0.2757 30 1 4.6657 -6.1991 2.3972 31 1 4.1160 -4.6485 3.0667 32 1 6.4916 -4.7205 2.0848 33 1 4.4455 -3.8107 -1.1053 34 1 4.4421 -2.2059 -0.3389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066346.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:02 Heat of formation + Delta-G solvation = -157.361603 kcal Electronic energy + Delta-G solvation = -21758.514156 eV Core-core repulsion = 18270.583187 eV Total energy + Delta-G solvation = -3487.930969 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.23149 -39.27064 -38.19453 -36.02491 -35.17978 -34.62274 -32.73417 -31.67475 -29.40846 -28.00050 -25.29532 -24.26838 -22.79512 -20.82637 -19.31692 -18.82779 -17.48929 -17.06264 -16.68412 -16.42004 -15.86578 -15.47122 -15.05655 -14.47974 -14.45235 -14.27150 -14.03277 -13.68498 -13.17592 -12.91415 -12.74409 -11.89016 -11.81475 -11.56991 -11.48663 -11.37808 -10.99630 -10.73163 -10.60704 -10.45446 -10.39052 -10.30190 -9.77358 -9.66428 -9.12218 -8.93003 -8.59426 -8.09697 -6.63300 -4.06872 2.89731 3.03198 3.16538 3.18870 3.44290 3.52706 3.60981 3.93368 4.19961 4.49712 4.87717 4.91028 4.99296 5.22678 5.32500 5.58095 5.62550 5.73898 6.06921 6.09040 6.18497 6.30208 6.39120 6.52143 6.58034 6.61416 6.93009 7.27194 7.42901 7.50302 7.55208 8.12156 8.42790 8.87396 9.08883 9.25262 9.64913 10.44036 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.017128 B = 0.008085 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.321122 B = 3462.312175 C = 4661.680781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.040 3.960 3 Si 0.921 3.079 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.342 4.342 8 H 0.109 0.891 9 N -0.424 5.424 10 C 0.152 3.848 11 C 0.498 3.502 12 O -0.511 6.511 13 O -0.534 6.534 14 C 0.473 3.527 15 O -0.602 6.602 16 C -0.091 4.091 17 H 0.099 0.901 18 C -0.115 4.115 19 C 0.111 3.889 20 N -0.722 5.722 21 C 0.527 3.473 22 O -0.566 6.566 23 C -0.125 4.125 24 H 0.274 0.726 25 H 0.085 0.915 26 H 0.125 0.875 27 H 0.391 0.609 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.394 0.606 33 H 0.100 0.900 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.520 -4.854 1.569 5.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.747 3.253 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.126 0.874 9 N -0.142 5.142 10 C 0.027 3.973 11 C 0.339 3.661 12 O -0.397 6.397 13 O -0.345 6.345 14 C 0.262 3.738 15 O -0.488 6.488 16 C -0.112 4.112 17 H 0.117 0.883 18 C -0.153 4.153 19 C -0.013 4.013 20 N -0.374 5.374 21 C 0.315 3.685 22 O -0.445 6.445 23 C -0.165 4.165 24 H 0.085 0.915 25 H 0.103 0.897 26 H 0.143 0.857 27 H 0.247 0.753 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.229 0.771 33 H 0.118 0.882 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.814 -4.847 1.103 5.712 hybrid contribution -0.083 0.878 0.917 1.272 sum 2.731 -3.969 2.020 5.225 Atomic orbital electron populations 1.69899 1.06284 1.28349 1.45505 1.25208 0.95148 1.00103 0.96077 0.86008 0.79648 0.80883 0.78765 1.19937 1.20974 1.19129 1.19729 0.99369 0.84943 1.42780 0.87364 1.43444 1.19678 1.05760 1.45306 1.20486 0.80902 1.04376 0.91586 1.23737 0.83111 0.70554 0.88707 1.90557 1.85708 1.45206 1.18215 1.84525 1.17467 1.85668 1.46834 1.19871 0.86910 0.82682 0.84329 1.90538 1.66944 1.36601 1.54716 1.21105 0.93256 0.97536 0.99330 0.88260 1.21683 0.98292 0.96585 0.98707 1.21451 0.85190 0.97408 0.97290 1.45489 1.11254 1.45939 1.34675 1.20289 0.90946 0.77486 0.79806 1.90718 1.32367 1.53405 1.68009 1.21658 0.90331 1.05371 0.99147 0.91542 0.89719 0.85719 0.75284 0.89477 0.90511 0.90670 0.91568 0.77113 0.88172 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.37 9.41 55.50 0.52 -20.85 16 2 C 0.04 0.96 4.83 -17.47 -0.08 0.88 16 3 Si 0.92 18.76 29.62 -169.99 -5.03 13.73 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.34 -8.09 8.71 -14.93 -0.13 -8.22 16 8 H 0.11 2.42 5.01 -52.49 -0.26 2.16 16 9 N -0.42 -10.01 2.17 -116.10 -0.25 -10.26 16 10 C 0.15 3.48 5.19 -5.19 -0.03 3.45 16 11 C 0.50 11.63 6.57 36.01 0.24 11.87 16 12 O -0.51 -13.52 16.91 -18.75 -0.32 -13.84 16 13 O -0.53 -10.28 13.42 -39.25 -0.53 -10.81 16 14 C 0.47 10.62 6.62 -10.98 -0.07 10.55 16 15 O -0.60 -14.66 15.82 5.55 0.09 -14.57 16 16 C -0.09 -1.66 1.72 -91.56 -0.16 -1.82 16 17 H 0.10 1.89 7.21 -51.93 -0.37 1.51 16 18 C -0.11 -1.73 4.67 -26.58 -0.12 -1.85 16 19 C 0.11 1.28 7.17 -4.48 -0.03 1.25 16 20 N -0.72 -9.50 5.45 -61.38 -0.33 -9.83 16 21 C 0.53 8.82 7.71 -11.87 -0.09 8.73 16 22 O -0.57 -11.29 17.78 5.56 0.10 -11.19 16 23 C -0.13 -2.15 5.10 -28.10 -0.14 -2.29 16 24 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 25 H 0.08 1.82 7.52 -51.93 -0.39 1.43 16 26 H 0.13 2.85 6.25 -51.93 -0.32 2.53 16 27 H 0.39 5.78 9.10 45.56 0.41 6.19 16 28 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.39 4.43 8.80 -40.82 -0.36 4.07 16 33 H 0.10 1.69 8.09 -51.93 -0.42 1.27 16 34 H 0.11 2.07 6.43 -51.93 -0.33 1.74 16 LS Contribution 289.47 15.07 4.36 4.36 Total: -1.00 -32.15 289.47 -4.90 -37.05 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -2.88 Total: 13.67 kcal Atomic # 6 Polarization: 23.17 SS G_CDS: -0.63 Total: 22.55 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -0.06 Total: -40.95 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.66 Total: -50.41 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.15 -4.90 -37.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066346.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.315 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds