Wall clock time and date at job start Mon Mar 30 2020 01:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48510 * 109.46567 * 269.99706 * 3 2 1 5 5 H 1.48490 * 109.47127 * 29.99351 * 3 2 1 6 6 H 1.48497 * 109.47419 * 150.00029 * 3 2 1 7 7 C 1.38956 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00125 * 204.66397 * 7 2 1 9 9 N 1.37102 * 119.99529 * 24.66351 * 7 2 1 10 10 C 1.46498 * 119.99804 * 12.92555 * 9 7 2 11 11 C 1.50701 * 109.47018 * 264.77662 * 10 9 7 12 12 O 1.20825 * 119.99857 * 0.02562 * 11 10 9 13 13 O 1.34229 * 119.99926 * 180.02562 * 11 10 9 14 14 C 1.34776 * 119.99923 * 192.92240 * 9 7 2 15 15 O 1.21287 * 120.00066 * 184.89109 * 14 9 7 16 16 C 1.50702 * 119.99624 * 4.88893 * 14 9 7 17 17 H 1.09001 * 109.67292 * 40.25557 * 16 14 9 18 18 C 1.53349 * 109.67058 * 160.78086 * 16 14 9 19 19 C 1.52933 * 108.66512 * 187.27975 * 18 16 14 20 20 N 1.45754 * 110.47761 * 309.22021 * 19 18 16 21 21 C 1.33352 * 124.10750 * 19.11096 * 20 19 18 22 22 O 1.21279 * 118.24495 * 177.73345 * 21 20 19 23 23 C 1.50180 * 123.50813 * 357.75405 * 21 20 19 24 24 H 0.96998 * 120.00266 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46703 * 144.78337 * 10 9 7 26 26 H 1.08997 * 109.47698 * 24.78377 * 10 9 7 27 27 H 0.96701 * 116.99859 * 180.02562 * 13 11 10 28 28 H 1.09004 * 109.60561 * 307.02241 * 18 16 14 29 29 H 1.09002 * 109.60157 * 67.50539 * 18 16 14 30 30 H 1.08995 * 109.29489 * 188.91866 * 19 18 16 31 31 H 1.08999 * 109.31639 * 69.53319 * 19 18 16 32 32 H 0.96999 * 117.94632 * 199.09056 * 20 19 18 33 33 H 1.08992 * 109.39801 * 257.45401 * 23 21 20 34 34 H 1.08996 * 109.39901 * 137.71311 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0463 -1.4002 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0149 -1.2458 0.3908 9 7 1.4172 -2.3367 -0.4944 10 6 0.1816 -2.2367 -1.2751 11 6 -1.0035 -2.4528 -0.3696 12 8 -0.8334 -2.6677 0.8072 13 8 -2.2480 -2.4064 -0.8703 14 6 1.9723 -3.5428 -0.2629 15 8 1.4998 -4.5361 -0.7739 16 6 3.1802 -3.6572 0.6310 17 1 3.0677 -2.9916 1.4868 18 6 3.3274 -5.1040 1.1173 19 6 4.4440 -5.1584 2.1609 20 7 5.6481 -4.5125 1.6535 21 6 5.6626 -3.6533 0.6338 22 8 6.7203 -3.1459 0.3259 23 6 4.4393 -3.2800 -0.1533 24 1 -0.4850 0.8400 -0.0004 25 1 0.1839 -2.9955 -2.0577 26 1 0.1170 -1.2475 -1.7283 27 1 -2.9763 -2.5507 -0.2507 28 1 2.3911 -5.4361 1.5660 29 1 3.5812 -5.7487 0.2757 30 1 4.6657 -6.1991 2.3972 31 1 4.1160 -4.6485 3.0667 32 1 6.4916 -4.7205 2.0848 33 1 4.4455 -3.8107 -1.1053 34 1 4.4421 -2.2059 -0.3389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066346.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:02 Heat of formation + Delta-G solvation = -181.762499 kcal Electronic energy + Delta-G solvation = -21759.572258 eV Core-core repulsion = 18270.583187 eV Total energy + Delta-G solvation = -3488.989072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.69590 -40.94089 -39.89158 -37.43046 -36.87165 -36.44252 -34.11539 -33.48081 -30.67213 -29.74492 -27.00712 -25.72425 -24.13682 -22.50717 -21.06001 -20.12068 -19.06082 -18.79956 -18.14661 -18.07504 -17.42054 -16.99946 -16.48143 -16.21533 -16.19696 -15.87302 -15.48650 -14.98366 -14.68084 -14.38495 -14.32752 -13.63383 -13.48829 -13.30953 -12.82977 -12.73897 -12.58023 -12.34444 -12.17184 -12.12027 -11.91063 -11.86756 -11.55272 -11.20069 -10.94721 -10.31164 -10.04626 -9.92759 -8.43831 -5.91983 1.38783 1.50215 1.57874 1.59179 1.72081 1.82008 2.24544 2.36418 2.51692 2.83970 3.13068 3.63565 3.81982 3.87919 3.93421 4.33811 4.34337 4.49036 4.53542 4.73285 4.76987 4.80886 4.86950 4.93091 5.08801 5.29817 5.47199 5.65641 5.88355 5.90909 6.28441 6.31088 7.05476 7.20449 7.35686 7.47155 7.86023 8.63758 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.017128 B = 0.008085 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.321122 B = 3462.312175 C = 4661.680781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.003 3.997 3 Si 0.983 3.017 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.353 4.353 8 H 0.117 0.883 9 N -0.436 5.436 10 C 0.147 3.853 11 C 0.501 3.499 12 O -0.548 6.548 13 O -0.522 6.522 14 C 0.463 3.537 15 O -0.625 6.625 16 C -0.085 4.085 17 H 0.091 0.909 18 C -0.111 4.111 19 C 0.116 3.884 20 N -0.705 5.705 21 C 0.529 3.471 22 O -0.602 6.602 23 C -0.118 4.118 24 H 0.274 0.726 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.413 0.587 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.409 0.591 33 H 0.101 0.899 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.323 -5.262 2.353 6.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.200 4.200 3 Si 0.807 3.193 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.480 4.480 8 H 0.134 0.866 9 N -0.154 5.154 10 C 0.021 3.979 11 C 0.344 3.656 12 O -0.437 6.437 13 O -0.334 6.334 14 C 0.254 3.746 15 O -0.513 6.513 16 C -0.106 4.106 17 H 0.110 0.890 18 C -0.150 4.150 19 C -0.007 4.007 20 N -0.356 5.356 21 C 0.317 3.683 22 O -0.484 6.484 23 C -0.158 4.158 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.140 0.860 27 H 0.272 0.728 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.135 0.865 31 H 0.099 0.901 32 H 0.246 0.754 33 H 0.119 0.881 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.591 -5.283 1.905 6.666 hybrid contribution -0.463 0.938 0.655 1.234 sum 3.128 -4.345 2.559 5.934 Atomic orbital electron populations 1.69978 1.07368 1.28804 1.46477 1.25941 0.95759 1.02586 0.95706 0.85071 0.78362 0.77164 0.78706 1.19459 1.21427 1.18790 1.20036 0.99794 0.85228 1.42941 0.86593 1.43666 1.19968 1.06273 1.45460 1.20542 0.81106 1.04383 0.91843 1.23779 0.84183 0.69565 0.88093 1.90532 1.86481 1.47114 1.19615 1.84456 1.16973 1.84877 1.47080 1.20617 0.87770 0.82016 0.84197 1.90506 1.67917 1.37195 1.55720 1.21083 0.91735 0.99714 0.98109 0.89039 1.21672 0.99614 0.94049 0.99630 1.21592 0.83163 0.99896 0.96062 1.45374 1.12626 1.44372 1.33252 1.20068 0.89887 0.77907 0.80464 1.90707 1.33240 1.55118 1.69377 1.21531 0.90281 1.04670 0.99347 0.91637 0.88926 0.86045 0.72776 0.90084 0.90754 0.86528 0.90071 0.75444 0.88120 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.04 9.41 21.66 0.20 -43.83 16 2 C 0.00 0.15 4.83 84.93 0.41 0.56 16 3 Si 0.98 38.21 29.62 68.60 2.03 40.25 16 4 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.29 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.35 -16.75 8.71 84.04 0.73 -16.02 16 8 H 0.12 5.18 5.01 -2.91 -0.01 5.17 16 9 N -0.44 -20.74 2.17 -639.60 -1.39 -22.13 16 10 C 0.15 6.77 5.19 85.63 0.44 7.22 16 11 C 0.50 23.42 6.57 71.24 0.47 23.89 16 12 O -0.55 -29.19 16.91 21.97 0.37 -28.82 16 13 O -0.52 -19.61 13.42 -51.40 -0.69 -20.30 16 14 C 0.46 20.90 6.62 87.66 0.58 21.48 16 15 O -0.63 -30.60 15.82 -3.05 -0.05 -30.65 16 16 C -0.09 -3.05 1.72 -11.40 -0.02 -3.07 16 17 H 0.09 3.42 7.21 -2.39 -0.02 3.41 16 18 C -0.11 -3.17 4.67 30.69 0.14 -3.02 16 19 C 0.12 2.27 7.17 86.50 0.62 2.89 16 20 N -0.71 -16.52 5.45 -467.30 -2.55 -19.07 16 21 C 0.53 16.93 7.71 87.72 0.68 17.61 16 22 O -0.60 -23.44 17.78 -3.03 -0.05 -23.49 16 23 C -0.12 -4.00 5.10 29.71 0.15 -3.85 16 24 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 25 H 0.09 4.02 7.52 -2.39 -0.02 4.00 16 26 H 0.12 5.62 6.25 -2.39 -0.01 5.61 16 27 H 0.41 11.63 9.10 -74.06 -0.67 10.95 16 28 H 0.08 2.42 8.14 -2.38 -0.02 2.41 16 29 H 0.07 2.15 8.11 -2.39 -0.02 2.13 16 30 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.41 7.82 8.80 -92.71 -0.82 7.01 16 33 H 0.10 3.37 8.09 -2.39 -0.02 3.35 16 34 H 0.10 3.72 6.43 -2.39 -0.02 3.70 16 Total: -1.00 -68.76 289.47 1.77 -66.99 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.32 Total: 33.38 kcal Atomic # 6 Polarization: 43.48 SS G_CDS: 4.21 Total: 47.69 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -3.73 Total: -85.03 kcal Atomic # 8 Polarization: -102.85 SS G_CDS: -0.42 Total: -103.27 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.25 kcal Total: -68.76 1.77 -66.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066346.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.777 kcal (2) G-P(sol) polarization free energy of solvation -68.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds