Wall clock time and date at job start Mon Mar 30 2020 01:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 114.00001 * 2 1 4 4 C 1.52993 * 109.47160 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46895 * 64.99967 * 4 3 2 6 6 C 1.36935 * 120.00232 * 269.99856 * 5 4 3 7 7 H 1.08003 * 120.00299 * 143.32739 * 6 5 4 8 8 C 1.38807 * 120.00174 * 323.33287 * 6 5 4 9 9 N 1.31626 * 119.99694 * 338.56461 * 8 6 5 10 10 Si 1.86801 * 120.00303 * 158.56865 * 8 6 5 11 11 H 1.48498 * 109.47302 * 59.99792 * 10 8 6 12 12 H 1.48500 * 109.47080 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46883 * 299.99713 * 10 8 6 14 14 C 1.46508 * 120.00028 * 90.00177 * 5 4 3 15 15 C 1.50696 * 109.47154 * 90.51956 * 14 5 4 16 16 C 1.38717 * 120.40375 * 89.07544 * 15 14 5 17 17 C 1.38561 * 118.43460 * 180.02562 * 16 15 14 18 18 C 1.38394 * 119.15141 * 0.02562 * 17 16 15 19 19 Cl 1.73603 * 119.63365 * 179.97438 * 18 17 16 20 20 N 1.31948 * 120.73225 * 359.97438 * 18 17 16 21 21 C 1.31909 * 121.70608 * 0.04144 * 20 18 17 22 22 H 1.08995 * 109.47152 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46841 * 299.99949 * 1 2 3 24 24 H 1.09002 * 109.47035 * 59.99943 * 1 2 3 25 25 H 1.09005 * 109.46693 * 59.99911 * 3 2 1 26 26 H 1.08998 * 109.47038 * 300.00047 * 3 2 1 27 27 H 1.08995 * 109.47227 * 305.00501 * 4 3 2 28 28 H 1.08994 * 109.47364 * 184.99813 * 4 3 2 29 29 H 0.97002 * 119.99523 * 179.97438 * 9 8 6 30 30 H 1.08997 * 109.46576 * 330.52130 * 14 5 4 31 31 H 1.09001 * 109.47142 * 210.51891 * 14 5 4 32 32 H 1.07997 * 120.77993 * 0.02562 * 16 15 14 33 33 H 1.08005 * 120.42114 * 179.72892 * 17 16 15 34 34 H 1.07994 * 119.60774 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0978 -0.7974 -1.3345 7 1 3.8369 -1.3076 -2.2500 8 6 4.5557 -1.5218 -0.2426 9 7 5.2581 -0.9237 0.6962 10 14 4.1754 -3.3456 -0.1055 11 1 4.7472 -4.0598 -1.2752 12 1 4.7732 -3.8834 1.1429 13 1 2.7040 -3.5434 -0.0756 14 6 4.2883 1.3998 -2.4131 15 6 5.7489 1.7697 -2.3886 16 6 6.6904 0.9520 -2.9963 17 6 8.0223 1.3309 -2.9488 18 6 8.3667 2.5042 -2.3006 19 17 10.0318 2.9906 -2.2329 20 7 7.4435 3.2573 -1.7335 21 6 6.1668 2.9264 -1.7596 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8508 0.5685 0.8426 28 1 3.9784 2.1765 0.0902 29 1 5.5778 -1.4299 1.4595 30 1 3.6834 2.3061 -2.3814 31 1 4.0684 0.8480 -3.3270 32 1 6.3922 0.0415 -3.4947 33 1 8.7826 0.7161 -3.4075 34 1 5.4396 3.5677 -1.2840 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835067385.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:04 Heat of formation + Delta-G solvation = -11.884636 kcal Electronic energy + Delta-G solvation = -18682.078819 eV Core-core repulsion = 15641.165369 eV Total energy + Delta-G solvation = -3040.913450 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.05748 -38.79020 -37.64995 -37.01960 -34.06137 -33.15323 -32.14578 -30.20045 -27.43722 -27.05797 -24.98781 -24.55360 -23.22635 -21.73608 -18.71020 -18.21973 -17.46304 -17.30605 -16.77177 -16.46519 -16.02708 -15.59103 -15.51566 -15.16680 -14.89461 -14.67083 -14.02367 -13.67304 -13.39770 -12.78134 -12.73048 -12.66158 -12.60884 -12.44540 -12.30173 -12.23751 -11.94140 -11.83180 -11.50274 -10.70575 -10.53039 -10.42548 -10.29363 -9.67653 -8.52574 -7.75065 -5.31407 0.10963 0.37198 0.89195 1.47683 1.53056 1.58474 2.56817 2.80288 3.24965 3.40264 3.63021 3.82503 4.02374 4.10029 4.21651 4.37808 4.46893 4.58273 4.64954 4.68034 4.78069 4.84400 4.89461 4.91422 4.99761 5.06566 5.16188 5.51789 5.71414 5.74236 5.85882 6.48311 6.70436 6.83456 7.23858 7.92085 8.41399 9.21180 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021207 B = 0.005780 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.024273 B = 4843.528828 C = 5647.217469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.055 3.945 4 C 0.138 3.862 5 N -0.575 5.575 6 C -0.234 4.234 7 H 0.055 0.945 8 C -0.022 4.022 9 N -0.913 5.913 10 Si 0.942 3.058 11 H -0.276 1.276 12 H -0.303 1.303 13 H -0.284 1.284 14 C 0.179 3.821 15 C -0.127 4.127 16 C -0.055 4.055 17 C -0.153 4.153 18 C 0.141 3.859 19 Cl -0.041 7.041 20 N -0.504 5.504 21 C 0.108 3.892 22 H 0.079 0.921 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.245 0.755 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.145 0.855 33 H 0.159 0.841 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 6.294 -6.266 9.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.023 4.023 4 C 0.012 3.988 5 N -0.294 5.294 6 C -0.365 4.365 7 H 0.073 0.927 8 C -0.220 4.220 9 N -0.558 5.558 10 Si 0.772 3.228 11 H -0.202 1.202 12 H -0.229 1.229 13 H -0.211 1.211 14 C 0.053 3.947 15 C -0.132 4.132 16 C -0.082 4.082 17 C -0.173 4.173 18 C -0.023 4.023 19 Cl -0.013 7.013 20 N -0.215 5.215 21 C -0.049 4.049 22 H 0.097 0.903 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.176 0.824 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.214 6.861 -5.694 8.998 hybrid contribution -0.209 -1.570 0.226 1.600 sum -1.423 5.291 -5.468 7.741 Atomic orbital electron populations 1.22803 0.81671 1.02452 1.00090 1.88146 1.19498 1.28843 1.95202 1.23208 0.96416 0.83980 0.98691 1.20989 0.89846 0.96461 0.91468 1.43990 1.73875 1.02101 1.09410 1.18964 1.35419 0.82782 0.99292 0.92696 1.25536 0.97028 1.00182 0.99213 1.70083 1.36477 1.36589 1.12631 0.85748 0.77819 0.82809 0.76421 1.20216 1.22936 1.21088 1.20155 0.87462 0.95301 0.91760 1.22217 1.01306 0.93992 0.95690 1.21624 0.91746 0.98520 0.96327 1.21962 0.98048 0.96127 1.01185 1.21641 0.87651 0.93499 0.99517 1.98349 1.13369 1.92320 1.97278 1.66860 1.02411 1.33942 1.18294 1.22644 0.90451 0.95626 0.96197 0.90286 0.93693 0.93596 0.93642 0.93558 0.91712 0.92761 0.94584 0.90547 0.91727 0.83694 0.82372 0.81288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -16.32 10.18 -148.98 -1.52 -17.83 16 3 C 0.06 2.01 6.28 71.98 0.45 2.46 16 4 C 0.14 5.93 5.72 86.38 0.49 6.42 16 5 N -0.58 -25.31 2.40 -706.36 -1.69 -27.00 16 6 C -0.23 -11.78 8.97 84.03 0.75 -11.03 16 7 H 0.06 2.77 7.92 -2.91 -0.02 2.75 16 8 C -0.02 -1.19 4.96 84.86 0.42 -0.76 16 9 N -0.91 -51.91 11.41 21.65 0.25 -51.66 16 10 Si 0.94 44.52 29.60 68.60 2.03 46.55 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 13 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 14 C 0.18 6.32 5.82 85.63 0.50 6.82 16 15 C -0.13 -4.51 5.48 -19.77 -0.11 -4.62 16 16 C -0.06 -1.91 9.86 22.46 0.22 -1.69 16 17 C -0.15 -4.94 9.88 22.38 0.22 -4.71 16 18 C 0.14 4.89 7.27 84.71 0.62 5.50 16 19 Cl -0.04 -1.23 29.11 -2.72 -0.08 -1.31 16 20 N -0.50 -18.65 10.34 -186.70 -1.93 -20.58 16 21 C 0.11 3.79 10.86 84.66 0.92 4.71 16 22 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 3.39 5.45 -2.39 -0.01 3.37 16 28 H 0.05 2.11 8.07 -2.39 -0.02 2.09 16 29 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 30 H 0.08 2.27 8.01 -2.39 -0.02 2.25 16 31 H 0.06 2.19 8.00 -2.39 -0.02 2.17 16 32 H 0.15 4.74 8.06 -2.91 -0.02 4.71 16 33 H 0.16 4.19 8.06 -2.91 -0.02 4.16 16 34 H 0.17 5.11 8.06 -2.91 -0.02 5.09 16 Total: -1.00 -62.00 311.11 3.89 -58.11 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.09 Total: 8.58 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 5.74 Total: 5.14 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -3.38 Total: -99.24 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -1.52 Total: -17.83 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -62.00 3.89 -58.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835067385.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.229 kcal (2) G-P(sol) polarization free energy of solvation -61.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds