Wall clock time and date at job start Mon Mar 30 2020 01:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 114.00084 * 2 1 4 4 C 1.53003 * 109.46727 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47091 * 66.83647 * 4 3 2 6 6 C 1.36936 * 119.99630 * 272.70270 * 5 4 3 7 7 H 1.08005 * 120.00246 * 325.02604 * 6 5 4 8 8 C 1.38814 * 120.00025 * 145.03497 * 6 5 4 9 9 N 1.31619 * 120.00116 * 157.02193 * 8 6 5 10 10 Si 1.86798 * 119.99762 * 337.01283 * 8 6 5 11 11 H 1.48506 * 109.46995 * 95.30500 * 10 8 6 12 12 H 1.48504 * 109.47474 * 215.29887 * 10 8 6 13 13 H 1.48499 * 109.47348 * 335.30244 * 10 8 6 14 14 C 1.46498 * 120.00400 * 92.69918 * 5 4 3 15 15 C 1.50701 * 109.46847 * 94.82303 * 14 5 4 16 16 C 1.38599 * 120.42544 * 96.29580 * 15 14 5 17 17 C 1.38670 * 118.43844 * 180.02562 * 16 15 14 18 18 C 1.38188 * 119.19094 * 0.02562 * 17 16 15 19 19 N 1.31878 * 120.78098 * 359.97333 * 18 17 16 20 20 C 1.31974 * 121.70674 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 119.63464 * 179.97438 * 20 19 18 22 22 H 1.09003 * 109.47346 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46996 * 300.00327 * 1 2 3 24 24 H 1.08994 * 109.46596 * 60.00103 * 1 2 3 25 25 H 1.08998 * 109.46748 * 59.99779 * 3 2 1 26 26 H 1.08999 * 109.46945 * 299.99820 * 3 2 1 27 27 H 1.08996 * 109.47540 * 306.83308 * 4 3 2 28 28 H 1.08998 * 109.46541 * 186.82870 * 4 3 2 29 29 H 0.97003 * 119.99946 * 180.02562 * 9 8 6 30 30 H 1.09002 * 109.46932 * 334.82500 * 14 5 4 31 31 H 1.08999 * 109.47645 * 214.82289 * 14 5 4 32 32 H 1.08004 * 120.78510 * 0.04442 * 16 15 14 33 33 H 1.08002 * 120.40471 * 180.02562 * 17 16 15 34 34 H 1.07999 * 119.60773 * 180.26115 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9799 0.6041 -1.2690 6 6 4.0482 -0.7559 -1.4133 7 1 4.3357 -1.3742 -0.5756 8 6 3.7480 -1.3401 -2.6362 9 7 4.2239 -2.5313 -2.9310 10 14 2.6685 -0.4356 -3.8633 11 1 3.5250 0.2959 -4.8311 12 1 1.8215 -1.4135 -4.5926 13 1 1.8007 0.5297 -3.1420 14 6 4.3512 1.4785 -2.3841 15 6 5.8417 1.7010 -2.3733 16 6 6.6722 0.9298 -3.1712 17 6 8.0374 1.1692 -3.1285 18 6 8.5221 2.1612 -2.2976 19 7 7.7031 2.8765 -1.5515 20 6 6.3986 2.6769 -1.5661 21 17 5.3700 3.6496 -0.5612 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.6886 1.8463 0.8900 26 1 1.6887 1.8463 -0.8900 27 1 3.8488 0.5418 0.8234 28 1 3.9783 2.1730 0.1228 29 1 4.0144 -2.9393 -3.7858 30 1 3.8402 2.4358 -2.2809 31 1 4.0604 1.0111 -3.3249 32 1 6.2657 0.1607 -3.8113 33 1 8.7137 0.5873 -3.7373 34 1 9.5838 2.3562 -2.2623 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835069196.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:06 Heat of formation + Delta-G solvation = -0.885051 kcal Electronic energy + Delta-G solvation = -19204.779620 eV Core-core repulsion = 16164.343147 eV Total energy + Delta-G solvation = -3040.436472 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.20718 -38.98216 -37.71690 -37.39764 -34.01188 -33.60215 -32.41206 -30.41077 -27.72833 -27.22516 -25.21634 -24.47903 -23.51253 -21.89497 -19.01794 -18.23650 -17.85100 -17.34279 -17.01468 -16.88368 -16.18560 -15.90103 -15.71464 -15.08725 -15.01259 -14.53058 -14.41684 -14.10829 -13.81331 -13.40658 -12.96915 -12.88084 -12.67715 -12.63861 -12.32052 -12.15921 -11.88293 -11.63302 -11.38473 -10.74401 -10.67643 -10.52597 -10.39335 -9.77518 -8.84234 -8.11811 -5.45416 0.00201 0.24910 0.82895 1.25741 1.41682 1.51175 2.44560 2.66933 3.06866 3.25254 3.40201 3.58407 3.78179 3.97908 4.05897 4.31356 4.36977 4.42080 4.44375 4.53981 4.58170 4.60681 4.69315 4.73889 4.77396 4.86274 5.12445 5.18668 5.32989 5.61493 5.96030 6.22066 6.50835 6.74729 6.99673 7.65595 8.04638 9.08481 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017646 B = 0.009253 C = 0.006795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.363755 B = 3025.204005 C = 4119.584693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.044 3.956 4 C 0.132 3.868 5 N -0.595 5.595 6 C -0.220 4.220 7 H 0.037 0.963 8 C -0.007 4.007 9 N -0.946 5.946 10 Si 0.924 3.076 11 H -0.272 1.272 12 H -0.315 1.315 13 H -0.263 1.263 14 C 0.169 3.831 15 C -0.129 4.129 16 C -0.063 4.063 17 C -0.158 4.158 18 C 0.105 3.895 19 N -0.499 5.499 20 C 0.165 3.835 21 Cl -0.028 7.028 22 H 0.082 0.918 23 H 0.058 0.942 24 H 0.032 0.968 25 H 0.066 0.934 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.094 0.906 29 H 0.260 0.740 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.125 0.875 33 H 0.172 0.828 34 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 12.184 1.044 12.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.034 4.034 4 C 0.007 3.993 5 N -0.316 5.316 6 C -0.350 4.350 7 H 0.055 0.945 8 C -0.203 4.203 9 N -0.591 5.591 10 Si 0.755 3.245 11 H -0.199 1.199 12 H -0.245 1.245 13 H -0.187 1.187 14 C 0.044 3.956 15 C -0.135 4.135 16 C -0.090 4.090 17 C -0.177 4.177 18 C -0.052 4.052 19 N -0.210 5.210 20 C 0.001 3.999 21 Cl 0.000 7.000 22 H 0.101 0.899 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.143 0.857 33 H 0.189 0.811 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.353 12.638 1.613 12.956 hybrid contribution -1.415 -0.674 -1.134 1.935 sum 0.937 11.964 0.480 12.011 Atomic orbital electron populations 1.22825 0.81408 1.02784 1.00051 1.88114 1.19828 1.28652 1.95220 1.23313 0.96380 0.84441 0.99307 1.21559 0.91062 0.98907 0.87760 1.44101 1.74466 1.01897 1.11158 1.18394 1.37915 0.81792 0.96912 0.94500 1.25690 0.99194 0.95895 0.99536 1.69981 1.46274 1.19108 1.23757 0.86192 0.80978 0.77914 0.79403 1.19920 1.24481 1.18722 1.20219 0.88550 0.94903 0.91943 1.21446 1.00384 0.95049 0.96640 1.21646 0.94472 0.96240 0.96687 1.22542 0.95238 0.99311 1.00617 1.23213 1.00464 0.90907 0.90610 1.66980 1.02738 1.28565 1.22698 1.21370 0.89914 0.93809 0.94834 1.98313 1.64076 1.69898 1.67703 0.89929 0.92352 0.94913 0.91631 0.94679 0.93893 0.88840 0.93085 0.90232 0.93756 0.85734 0.81084 0.78106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -16.67 10.12 -148.98 -1.51 -18.18 16 3 C 0.04 1.59 6.27 71.98 0.45 2.05 16 4 C 0.13 5.21 6.07 86.38 0.52 5.73 16 5 N -0.60 -27.48 2.12 -706.33 -1.50 -28.98 16 6 C -0.22 -12.27 9.35 84.03 0.79 -11.49 16 7 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 8 C -0.01 -0.42 5.33 84.86 0.45 0.03 16 9 N -0.95 -57.71 13.97 21.65 0.30 -57.41 16 10 Si 0.92 45.45 24.97 68.60 1.71 47.16 16 11 H -0.27 -12.41 6.67 99.48 0.66 -11.74 16 12 H -0.32 -16.04 7.11 99.48 0.71 -15.34 16 13 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 14 C 0.17 7.05 4.38 85.63 0.38 7.43 16 15 C -0.13 -4.98 5.45 -19.75 -0.11 -5.09 16 16 C -0.06 -2.32 9.83 22.46 0.22 -2.10 16 17 C -0.16 -4.38 10.11 22.36 0.23 -4.15 16 18 C 0.11 2.76 11.18 84.67 0.95 3.71 16 19 N -0.50 -16.20 10.34 -186.69 -1.93 -18.13 16 20 C 0.16 5.80 7.27 84.70 0.62 6.42 16 21 Cl -0.03 -0.88 24.35 -2.72 -0.07 -0.95 16 22 H 0.08 2.46 8.14 -2.39 -0.02 2.45 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 1.81 8.06 -2.39 -0.02 1.79 16 28 H 0.09 3.21 4.31 -2.39 -0.01 3.20 16 29 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.08 2.93 7.09 -2.39 -0.02 2.91 16 31 H 0.04 2.00 2.68 -2.39 -0.01 2.00 16 32 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 33 H 0.17 3.47 8.06 -2.91 -0.02 3.44 16 34 H 0.20 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -68.27 296.41 3.82 -64.46 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.06 Total: 7.43 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 5.74 Total: 4.60 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -3.12 Total: -104.52 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -1.51 Total: -18.18 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.71 Total: 47.16 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.07 Total: -0.95 kcal Total: -68.27 3.82 -64.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835069196.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.571 kcal (2) G-P(sol) polarization free energy of solvation -68.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds