Wall clock time and date at job start Mon Mar 30 2020 01:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99744 * 2 1 4 4 C 1.52998 * 109.47304 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46753 * 64.99871 * 4 3 2 6 6 C 1.36938 * 120.00042 * 270.00171 * 5 4 3 7 7 H 1.07999 * 120.00129 * 140.38435 * 6 5 4 8 8 C 1.38810 * 119.99974 * 320.37941 * 6 5 4 9 9 N 1.31629 * 119.99820 * 162.86814 * 8 6 5 10 10 Si 1.86794 * 120.00332 * 342.86730 * 8 6 5 11 11 H 1.48498 * 109.47323 * 95.51976 * 10 8 6 12 12 H 1.48502 * 109.47534 * 215.52081 * 10 8 6 13 13 H 1.48505 * 109.47051 * 335.51829 * 10 8 6 14 14 C 1.46498 * 119.99971 * 90.00347 * 5 4 3 15 15 C 1.50698 * 109.47339 * 270.05334 * 14 5 4 16 16 C 1.38710 * 120.78271 * 275.47415 * 15 14 5 17 17 C 1.38142 * 119.19774 * 180.02562 * 16 15 14 18 18 N 1.31912 * 120.77903 * 0.02562 * 17 16 15 19 19 C 1.31946 * 121.70483 * 359.67713 * 18 17 16 20 20 Cl 1.73606 * 119.63206 * 180.29365 * 19 18 17 21 21 C 1.38394 * 120.73274 * 0.58971 * 19 18 17 22 22 H 1.08998 * 109.47692 * 300.00257 * 1 2 3 23 23 H 1.09000 * 109.47279 * 60.00116 * 1 2 3 24 24 H 1.09000 * 109.47018 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47110 * 60.00027 * 3 2 1 26 26 H 1.09001 * 109.47708 * 300.00016 * 3 2 1 27 27 H 1.09003 * 109.47351 * 305.00383 * 4 3 2 28 28 H 1.08999 * 109.47432 * 185.00193 * 4 3 2 29 29 H 0.96996 * 119.99768 * 180.02562 * 9 8 6 30 30 H 1.09005 * 109.47295 * 150.05426 * 14 5 4 31 31 H 1.08998 * 109.46981 * 30.05508 * 14 5 4 32 32 H 1.08001 * 120.40417 * 359.97438 * 16 15 14 33 33 H 1.08001 * 119.61078 * 179.97438 * 17 16 15 34 34 H 1.07996 * 120.42652 * 179.72608 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0977 -0.7973 -1.3344 7 1 3.7922 -1.3125 -2.2331 8 6 4.6134 -1.5152 -0.2641 9 7 4.4261 -2.8162 -0.1930 10 14 5.5732 -0.6352 1.0751 11 1 4.6641 -0.3101 2.2034 12 1 6.6678 -1.5144 1.5589 13 1 6.1508 0.6186 0.5277 14 6 4.2881 1.3999 -2.4130 15 6 3.0437 1.5938 -3.2405 16 6 2.6644 0.6504 -4.1840 17 6 1.5178 0.8614 -4.9249 18 7 0.7870 1.9446 -4.7439 19 6 1.1136 2.8604 -3.8519 20 17 0.1086 4.2619 -3.6531 21 6 2.2517 2.7190 -3.0773 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6885 1.8464 0.8900 26 1 1.6886 1.8465 -0.8900 27 1 3.8508 0.5686 0.8427 28 1 3.9783 2.1767 0.0902 29 1 4.7861 -3.3177 0.5551 30 1 5.0535 0.9121 -3.0167 31 1 4.6547 2.3693 -2.0755 32 1 3.2588 -0.2381 -4.3381 33 1 1.2165 0.1314 -5.6616 34 1 2.5167 3.4738 -2.3517 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839086010.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:12 Heat of formation + Delta-G solvation = 14.172069 kcal Electronic energy + Delta-G solvation = -19175.460685 eV Core-core repulsion = 16135.677138 eV Total energy + Delta-G solvation = -3039.783547 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.97907 -37.46017 -36.51673 -35.74391 -32.84817 -31.41882 -30.77519 -29.13934 -26.47414 -25.72173 -23.35216 -23.10121 -22.05025 -20.56839 -17.01703 -16.62614 -16.24847 -16.02382 -15.47472 -15.36916 -14.77719 -14.38629 -14.15882 -13.88294 -13.69457 -13.05484 -12.84042 -12.18289 -12.12397 -11.72217 -11.60351 -11.44396 -11.22281 -11.19439 -10.83648 -10.70368 -10.40999 -9.81217 -9.61959 -9.49233 -9.36148 -8.90167 -8.68184 -8.47614 -6.93262 -5.94171 -3.44180 1.22651 1.47586 1.97121 3.31322 3.44232 3.47164 3.91130 4.51116 4.54477 4.68472 4.95083 5.07771 5.20564 5.34520 5.43128 5.53258 5.68961 5.76663 5.79299 5.92866 5.95346 5.98255 6.03305 6.09723 6.19994 6.22974 6.41256 6.62006 6.72289 6.81947 7.90481 7.94384 8.07312 8.37651 8.90467 9.70470 10.03215 11.20826 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.022898 B = 0.006669 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.515404 B = 4197.295792 C = 4455.980719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.347 6.347 3 C 0.042 3.958 4 C 0.132 3.868 5 N -0.587 5.587 6 C -0.259 4.259 7 H 0.077 0.923 8 C 0.046 3.954 9 N -0.899 5.899 10 Si 0.883 3.117 11 H -0.287 1.287 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.177 3.823 15 C -0.024 4.024 16 C -0.143 4.143 17 C 0.110 3.890 18 N -0.493 5.493 19 C 0.168 3.832 20 Cl -0.053 7.053 21 C -0.153 4.153 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.078 0.922 25 H 0.027 0.973 26 H 0.041 0.959 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.262 0.738 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.144 0.856 33 H 0.159 0.841 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 11.192 -4.489 12.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C -0.038 4.038 4 C 0.006 3.994 5 N -0.307 5.307 6 C -0.388 4.388 7 H 0.095 0.905 8 C -0.155 4.155 9 N -0.540 5.540 10 Si 0.714 3.286 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.050 3.950 15 C -0.035 4.035 16 C -0.163 4.163 17 C -0.046 4.046 18 N -0.205 5.205 19 C 0.004 3.996 20 Cl -0.024 7.024 21 C -0.175 4.175 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.097 0.903 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.176 0.824 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.071 11.076 -4.863 13.116 hybrid contribution 0.531 0.592 1.419 1.627 sum -4.540 11.668 -3.443 12.984 Atomic orbital electron populations 1.22626 0.83701 1.01839 0.98308 1.88267 1.16965 1.26424 1.94820 1.23326 0.97236 0.85280 0.97928 1.21416 0.90449 0.96644 0.90884 1.43977 1.76036 1.03850 1.06879 1.18552 1.37065 0.79445 1.03693 0.90540 1.25348 0.97349 0.94839 0.97943 1.69816 1.45908 1.06681 1.31576 0.86849 0.79887 0.79541 0.82316 1.21500 1.23148 1.19529 1.19998 0.90441 0.95474 0.89088 1.21640 0.98330 0.90808 0.92697 1.22205 0.98022 1.00119 0.95974 1.22578 0.91035 0.92990 0.98022 1.66883 1.32547 1.02576 1.18471 1.21504 0.91580 0.90710 0.95853 1.98368 1.69895 1.38040 1.96127 1.21671 0.94736 1.00109 1.01004 0.95489 0.95392 0.90309 0.95466 0.94092 0.91954 0.92526 0.92815 0.90387 0.92796 0.83859 0.82364 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 101.05 1.11 1.69 16 2 O -0.35 -7.74 10.18 -35.23 -0.36 -8.10 16 3 C 0.04 0.80 6.28 37.16 0.23 1.04 16 4 C 0.13 2.70 4.90 -4.04 -0.02 2.68 16 5 N -0.59 -12.76 2.03 -174.61 -0.35 -13.11 16 6 C -0.26 -6.78 9.45 -15.06 -0.14 -6.93 16 7 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 8 C 0.05 1.28 5.38 -17.43 -0.09 1.19 16 9 N -0.90 -26.91 13.97 55.49 0.78 -26.14 16 10 Si 0.88 21.65 24.78 -169.99 -4.21 17.44 16 11 H -0.29 -7.01 6.76 56.52 0.38 -6.63 16 12 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 13 H -0.27 -6.27 7.07 56.52 0.40 -5.87 16 14 C 0.18 3.08 5.89 -5.20 -0.03 3.05 16 15 C -0.02 -0.39 5.21 -104.33 -0.54 -0.93 16 16 C -0.14 -2.28 9.83 -39.44 -0.39 -2.67 16 17 C 0.11 1.65 11.18 -17.55 -0.20 1.45 16 18 N -0.49 -8.08 10.34 -10.36 -0.11 -8.18 16 19 C 0.17 2.63 7.27 -17.45 -0.13 2.51 16 20 Cl -0.05 -0.72 29.11 -51.86 -1.51 -2.23 16 21 C -0.15 -2.34 7.66 -39.40 -0.30 -2.64 16 22 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.04 0.75 5.74 -51.93 -0.30 0.45 16 27 H 0.06 1.45 3.14 -51.93 -0.16 1.28 16 28 H 0.06 0.98 7.89 -51.93 -0.41 0.57 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.08 1.34 8.03 -51.93 -0.42 0.92 16 31 H 0.05 0.81 7.82 -51.93 -0.41 0.41 16 32 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 33 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.14 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 301.13 15.07 4.54 4.54 Total: -1.00 -30.88 301.13 -5.96 -36.84 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -4.23 Total: -1.49 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -0.50 Total: 0.45 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.31 Total: -47.43 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.36 Total: -8.10 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.21 Total: 17.44 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.51 Total: -2.23 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.88 -5.96 -36.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839086010.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.008 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds