Wall clock time and date at job start Mon Mar 30 2020 01:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99846 * 2 1 4 4 C 1.53006 * 109.47025 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46757 * 64.99485 * 4 3 2 6 6 C 1.36937 * 120.00468 * 269.99783 * 5 4 3 7 7 H 1.07994 * 120.00156 * 142.56489 * 6 5 4 8 8 C 1.38820 * 119.99455 * 322.56756 * 6 5 4 9 9 N 1.31615 * 119.99542 * 158.16496 * 8 6 5 10 10 Si 1.86797 * 120.00091 * 338.16036 * 8 6 5 11 11 H 1.48497 * 109.47175 * 95.32402 * 10 8 6 12 12 H 1.48499 * 109.46914 * 215.32144 * 10 8 6 13 13 H 1.48497 * 109.46996 * 335.32318 * 10 8 6 14 14 C 1.46502 * 119.99928 * 90.00653 * 5 4 3 15 15 C 1.50692 * 109.47674 * 85.77356 * 14 5 4 16 16 C 1.38190 * 119.61165 * 94.62980 * 15 14 5 17 17 C 1.38662 * 119.19667 * 180.02562 * 16 15 14 18 18 C 1.38612 * 118.43714 * 0.02562 * 17 16 15 19 19 C 1.38356 * 119.14781 * 359.97438 * 18 17 16 20 20 Cl 1.73595 * 119.63486 * 180.02562 * 19 18 17 21 21 N 1.31881 * 119.61262 * 274.36515 * 15 14 5 22 22 H 1.09000 * 109.46892 * 60.00501 * 1 2 3 23 23 H 1.08996 * 109.47149 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47260 * 300.00607 * 1 2 3 25 25 H 1.08998 * 109.47460 * 59.99214 * 3 2 1 26 26 H 1.09004 * 109.46946 * 299.99580 * 3 2 1 27 27 H 1.08993 * 109.46872 * 305.00013 * 4 3 2 28 28 H 1.08993 * 109.47057 * 184.99473 * 4 3 2 29 29 H 0.97004 * 120.00124 * 179.97438 * 9 8 6 30 30 H 1.09001 * 109.47187 * 205.78060 * 14 5 4 31 31 H 1.08998 * 109.46886 * 325.76926 * 14 5 4 32 32 H 1.08004 * 120.40051 * 359.97438 * 16 15 14 33 33 H 1.07996 * 120.78691 * 180.02562 * 17 16 15 34 34 H 1.08000 * 120.43064 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.0979 -0.7975 -1.3344 7 1 3.8253 -1.3090 -2.2456 8 6 4.5710 -1.5201 -0.2476 9 7 4.2986 -2.8035 -0.1419 10 14 5.5942 -0.6712 1.0645 11 1 4.7141 -0.2535 2.1852 12 1 6.6279 -1.6097 1.5702 13 1 6.2539 0.5244 0.4811 14 6 4.2884 1.3996 -2.4130 15 6 5.7189 1.8654 -2.3277 16 6 6.7090 1.1527 -2.9770 17 6 8.0225 1.5887 -2.8923 18 6 8.2928 2.7303 -2.1540 19 6 7.2500 3.3924 -1.5308 20 17 7.5740 4.8237 -0.6035 21 7 6.0107 2.9514 -1.6387 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8900 25 1 1.6885 1.8465 0.8899 26 1 1.6886 1.8464 -0.8901 27 1 3.8508 0.5686 0.8427 28 1 3.9785 2.1765 0.0901 29 1 4.6295 -3.3086 0.6173 30 1 4.1488 0.8199 -3.3254 31 1 3.6249 2.2643 -2.4271 32 1 6.4627 0.2663 -3.5428 33 1 8.8164 1.0516 -3.3899 34 1 9.3044 3.0982 -2.0662 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839086438.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:01 Heat of formation + Delta-G solvation = -6.635196 kcal Electronic energy + Delta-G solvation = -18894.506199 eV Core-core repulsion = 15853.820382 eV Total energy + Delta-G solvation = -3040.685817 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.16075 -38.96086 -37.70499 -37.14199 -34.00491 -33.39118 -32.58506 -30.42472 -28.00029 -27.11833 -24.91285 -24.34222 -23.68214 -22.00661 -18.80158 -18.06259 -17.77785 -17.24652 -17.07903 -16.57572 -16.44965 -15.88373 -15.72522 -15.12871 -14.82488 -14.67160 -14.41160 -13.99215 -13.54799 -13.04980 -13.01893 -12.76224 -12.71990 -12.44114 -12.35582 -12.29809 -12.11141 -11.72508 -11.51486 -10.85726 -10.64684 -10.53195 -10.35469 -9.78938 -8.80742 -8.13131 -5.48078 0.03650 0.28734 0.82727 1.25758 1.34887 1.44144 2.43065 2.66022 3.10456 3.13970 3.44867 3.60369 3.91633 4.07652 4.15765 4.31106 4.38584 4.43299 4.51442 4.60099 4.61394 4.69811 4.73006 4.76789 4.90243 4.94893 5.08604 5.10604 5.25494 5.64970 5.98143 6.24123 6.57897 6.86893 6.98881 7.66034 8.07970 9.06652 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.006996 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.423251 B = 4001.612395 C = 4444.422479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.053 3.947 4 C 0.131 3.869 5 N -0.592 5.592 6 C -0.224 4.224 7 H 0.055 0.945 8 C 0.001 3.999 9 N -0.940 5.940 10 Si 0.926 3.074 11 H -0.289 1.289 12 H -0.313 1.313 13 H -0.272 1.272 14 C 0.191 3.809 15 C 0.123 3.877 16 C -0.163 4.163 17 C -0.061 4.061 18 C -0.167 4.167 19 C 0.151 3.849 20 Cl -0.041 7.041 21 N -0.502 5.502 22 H 0.047 0.953 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.029 0.971 28 H 0.075 0.925 29 H 0.258 0.742 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.178 0.822 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.788 12.912 -4.601 14.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.316 6.316 3 C -0.026 4.026 4 C 0.006 3.994 5 N -0.313 5.313 6 C -0.354 4.354 7 H 0.072 0.928 8 C -0.196 4.196 9 N -0.584 5.584 10 Si 0.759 3.241 11 H -0.218 1.218 12 H -0.242 1.242 13 H -0.197 1.197 14 C 0.065 3.935 15 C -0.016 4.016 16 C -0.184 4.184 17 C -0.087 4.087 18 C -0.188 4.188 19 C -0.013 4.013 20 Cl -0.013 7.013 21 N -0.215 5.215 22 H 0.066 0.934 23 H 0.097 0.903 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.167 0.833 33 H 0.195 0.805 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.240 13.187 -4.029 14.164 hybrid contribution 0.948 -0.125 0.844 1.276 sum 4.189 13.062 -3.184 14.082 Atomic orbital electron populations 1.22807 0.81210 1.02582 1.00217 1.88213 1.19970 1.28168 1.95242 1.23120 0.95092 0.84624 0.99757 1.21316 0.92485 0.96844 0.88728 1.44125 1.74917 1.02355 1.09895 1.18518 1.35163 0.81141 1.00543 0.92759 1.25726 0.99204 0.95018 0.99621 1.69953 1.47560 1.09262 1.31652 0.86143 0.79347 0.77886 0.80770 1.21775 1.24235 1.19726 1.20142 0.87542 0.94435 0.91365 1.22600 1.00226 0.88248 0.90573 1.22346 0.93913 1.01096 1.01036 1.22002 0.97185 0.94190 0.95286 1.22062 1.00289 0.97053 0.99410 1.21957 0.91146 0.91660 0.96575 1.98363 1.94280 1.36523 1.72123 1.66747 1.21414 1.15318 1.17979 0.93442 0.90333 0.93350 0.92776 0.92586 0.95258 0.90658 0.93307 0.89538 0.90832 0.83333 0.80479 0.81357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 11.01 113.37 1.25 2.16 16 2 O -0.40 -17.48 10.18 -148.98 -1.52 -18.99 16 3 C 0.05 2.00 6.28 71.98 0.45 2.45 16 4 C 0.13 5.75 4.95 86.38 0.43 6.17 16 5 N -0.59 -26.95 2.05 -706.36 -1.45 -28.39 16 6 C -0.22 -12.15 9.41 84.04 0.79 -11.36 16 7 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 8 C 0.00 0.07 5.31 84.86 0.45 0.52 16 9 N -0.94 -58.68 13.97 21.65 0.30 -58.38 16 10 Si 0.93 48.48 25.00 68.60 1.72 50.20 16 11 H -0.29 -15.09 6.67 99.48 0.66 -14.42 16 12 H -0.31 -16.61 7.11 99.48 0.71 -15.91 16 13 H -0.27 -14.07 7.11 99.48 0.71 -13.36 16 14 C 0.19 7.09 5.98 85.63 0.51 7.61 16 15 C 0.12 4.45 6.36 42.54 0.27 4.72 16 16 C -0.16 -5.14 9.72 22.36 0.22 -4.92 16 17 C -0.06 -1.54 10.17 22.46 0.23 -1.32 16 18 C -0.17 -4.33 9.88 22.39 0.22 -4.11 16 19 C 0.15 4.80 7.27 84.70 0.62 5.41 16 20 Cl -0.04 -1.14 29.11 -2.72 -0.08 -1.22 16 21 N -0.50 -18.30 10.25 -174.86 -1.79 -20.09 16 22 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.03 1.47 3.21 -2.39 -0.01 1.46 16 28 H 0.08 3.07 8.07 -2.39 -0.02 3.05 16 29 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 30 H 0.09 3.00 7.91 -2.39 -0.02 2.99 16 31 H 0.07 2.48 8.10 -2.39 -0.02 2.46 16 32 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 33 H 0.18 3.02 8.06 -2.91 -0.02 2.99 16 34 H 0.17 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -69.84 306.32 3.67 -66.17 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: 1.05 Total: 3.38 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 5.43 Total: 7.33 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -2.94 Total: -106.86 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -1.52 Total: -18.99 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 1.72 Total: 50.20 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -69.84 3.67 -66.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839086438.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.532 kcal (2) G-P(sol) polarization free energy of solvation -69.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds