Wall clock time and date at job start Mon Mar 30 2020 01:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47601 * 2 1 4 4 C 1.50699 * 109.47118 * 239.99603 * 2 1 3 5 5 H 1.08003 * 119.99860 * 241.34908 * 4 2 1 6 6 C 1.37872 * 119.99986 * 61.35273 * 4 2 1 7 7 N 1.31520 * 120.00004 * 193.97484 * 6 4 2 8 8 Si 1.86795 * 119.99988 * 13.97237 * 6 4 2 9 9 H 1.48502 * 109.46990 * 84.55326 * 8 6 4 10 10 H 1.48505 * 109.47035 * 204.55142 * 8 6 4 11 11 H 1.48502 * 109.47491 * 324.55254 * 8 6 4 12 12 C 1.53008 * 109.47141 * 119.99615 * 2 1 3 13 13 N 1.46497 * 109.46852 * 300.00366 * 12 2 1 14 14 C 1.38552 * 119.99563 * 180.02562 * 13 12 2 15 15 C 1.39588 * 120.47687 * 359.97438 * 14 13 12 16 16 C 1.38292 * 118.47530 * 180.02562 * 15 14 13 17 17 Cl 1.73600 * 120.36910 * 179.97438 * 16 15 14 18 18 N 1.32631 * 119.25955 * 0.02562 * 16 15 14 19 19 C 1.32458 * 120.90892 * 359.97438 * 18 16 15 20 20 N 1.38399 * 119.17025 * 179.97438 * 19 18 16 21 21 N 1.32464 * 121.66429 * 359.71883 * 19 18 16 22 22 H 1.09005 * 109.46891 * 309.37303 * 1 2 3 23 23 H 1.08994 * 109.46676 * 69.36975 * 1 2 3 24 24 H 1.08993 * 109.47067 * 189.36852 * 1 2 3 25 25 H 1.08997 * 109.47412 * 179.97438 * 3 2 1 26 26 H 1.09005 * 109.46555 * 300.00019 * 3 2 1 27 27 H 1.09000 * 109.47290 * 59.99329 * 3 2 1 28 28 H 0.96996 * 119.99991 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47148 * 179.97438 * 12 2 1 30 30 H 1.09004 * 109.46527 * 59.99701 * 12 2 1 31 31 H 0.96990 * 120.00300 * 359.97438 * 13 12 2 32 32 H 1.07994 * 120.76264 * 359.97438 * 15 14 13 33 33 H 0.97004 * 119.99792 * 0.02562 * 20 19 18 34 34 H 0.96995 * 120.00210 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6351 -1.6011 -1.1314 6 6 1.7224 -0.2235 -2.4825 7 7 1.9159 -0.9727 -3.5459 8 14 1.0277 1.5005 -2.6684 9 1 2.1419 2.4815 -2.7084 10 1 0.2471 1.5863 -3.9288 11 1 0.1419 1.8043 -1.5159 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8868 -0.5035 3.7038 15 6 2.6887 -1.6375 3.8435 16 6 2.9973 -2.0738 5.1190 17 17 3.9902 -3.4790 5.3497 18 7 2.5253 -1.4073 6.1640 19 6 1.7663 -0.3341 6.0003 20 7 1.2927 0.3337 7.1162 21 7 1.4533 0.1190 4.7956 22 1 -0.3633 0.6520 0.7945 23 1 -0.3632 0.3621 -0.9617 24 1 -0.3633 -1.0139 0.1673 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9562 -0.8901 27 1 1.6767 1.9564 0.8899 28 1 1.6975 -0.6303 -4.4267 29 1 3.1300 -0.7216 1.2491 30 1 1.6766 -1.7489 1.2493 31 1 0.9942 0.7582 2.3564 32 1 3.0590 -2.1625 2.9754 33 1 1.5178 0.0147 8.0042 34 1 0.7357 1.1207 7.0103 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840335611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:27 Heat of formation + Delta-G solvation = 42.633177 kcal Electronic energy + Delta-G solvation = -18379.873922 eV Core-core repulsion = 15373.617293 eV Total energy + Delta-G solvation = -3006.256629 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.88833 -39.23827 -37.88603 -36.61715 -35.11957 -34.04420 -32.83496 -30.58412 -28.03344 -27.58764 -26.84421 -24.86540 -23.68466 -20.95602 -19.67424 -19.06084 -18.05362 -17.40164 -16.72560 -16.66708 -16.48808 -16.14308 -15.65645 -15.44279 -15.29330 -14.80689 -14.41734 -13.95242 -13.76304 -13.67106 -13.38194 -12.48402 -12.35699 -12.29658 -12.14619 -11.93379 -11.85550 -11.69713 -11.27344 -11.04065 -10.59446 -10.40866 -10.29992 -9.68168 -8.99407 -8.28332 -6.28792 0.06257 0.41367 0.60168 1.37233 1.39688 1.50601 1.89867 2.35808 2.48589 2.87740 3.08457 3.63209 3.82937 4.06025 4.31514 4.34006 4.39308 4.45774 4.68225 4.81027 4.86863 4.90185 4.96067 5.07509 5.22225 5.47630 5.59300 5.71085 5.78095 6.11789 6.26761 6.32189 6.35550 6.70149 6.78834 7.36480 7.46801 8.88010 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027479 B = 0.004682 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.722846 B = 5979.185152 C = 6788.524071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.149 4.149 4 C -0.510 4.510 5 H 0.042 0.958 6 C 0.022 3.978 7 N -0.942 5.942 8 Si 0.936 3.064 9 H -0.284 1.284 10 H -0.318 1.318 11 H -0.211 1.211 12 C 0.156 3.844 13 N -0.686 5.686 14 C 0.483 3.517 15 C -0.336 4.336 16 C 0.283 3.717 17 Cl -0.012 7.012 18 N -0.624 5.624 19 C 0.608 3.392 20 N -0.800 5.800 21 N -0.637 5.637 22 H 0.056 0.944 23 H 0.042 0.958 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.263 0.737 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.411 0.589 32 H 0.153 0.847 33 H 0.424 0.576 34 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 3.051 19.410 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.548 4.548 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.582 5.582 8 Si 0.767 3.233 9 H -0.212 1.212 10 H -0.248 1.248 11 H -0.135 1.135 12 C 0.032 3.968 13 N -0.317 5.317 14 C 0.235 3.765 15 C -0.368 4.368 16 C 0.113 3.887 17 Cl 0.016 6.984 18 N -0.356 5.356 19 C 0.247 3.753 20 N -0.351 5.351 21 N -0.374 5.374 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.249 0.751 32 H 0.171 0.829 33 H 0.258 0.742 34 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -1.423 3.256 19.847 20.163 hybrid contribution 0.074 0.299 -1.300 1.336 sum -1.348 3.555 18.547 18.933 Atomic orbital electron populations 1.22227 0.96539 1.00690 1.00474 1.18646 0.93469 0.92951 0.92246 1.22307 1.01220 0.97205 0.99800 1.20978 1.32707 1.11209 0.89934 0.94017 1.25721 0.95454 1.00880 0.95535 1.70088 1.50713 1.38025 0.99359 0.86464 0.79318 0.80896 0.76641 1.21189 1.24770 1.13529 1.21413 0.98384 0.95488 0.81493 1.44790 1.53854 1.32027 1.00998 1.18136 0.85687 0.86779 0.85930 1.21616 1.12902 1.04005 0.98279 1.21262 0.89886 0.88822 0.88777 1.98407 1.66135 1.36217 1.97626 1.67148 1.21415 1.12492 1.34534 1.18915 0.85300 0.84798 0.86304 1.41640 1.56563 1.32623 1.04235 1.67336 1.35333 1.37382 0.97333 0.92534 0.93881 0.93544 0.92958 0.95001 0.91669 0.92767 0.91774 0.91946 0.75058 0.82904 0.74249 0.74250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 7.53 71.98 0.54 -4.66 16 2 C 0.03 1.10 0.50 -52.93 -0.03 1.08 16 3 C -0.15 -5.37 7.52 71.98 0.54 -4.83 16 4 C -0.51 -26.08 8.62 25.60 0.22 -25.86 16 5 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 6 C 0.02 1.19 5.32 84.65 0.45 1.64 16 7 N -0.94 -56.36 13.96 21.45 0.30 -56.06 16 8 Si 0.94 41.90 22.79 68.60 1.56 43.46 16 9 H -0.28 -12.57 7.10 99.48 0.71 -11.87 16 10 H -0.32 -14.83 7.11 99.48 0.71 -14.13 16 11 H -0.21 -8.15 4.65 99.48 0.46 -7.68 16 12 C 0.16 5.24 3.74 86.38 0.32 5.56 16 13 N -0.69 -20.02 5.16 -344.64 -1.78 -21.80 16 14 C 0.48 14.38 7.70 133.16 1.03 15.41 16 15 C -0.34 -9.78 9.19 22.61 0.21 -9.57 16 16 C 0.28 8.00 7.32 84.59 0.62 8.62 16 17 Cl -0.01 -0.30 29.15 -2.72 -0.08 -0.38 16 18 N -0.62 -17.46 10.45 -189.08 -1.98 -19.44 16 19 C 0.61 15.82 8.67 261.52 2.27 18.09 16 20 N -0.80 -13.20 9.07 -59.79 -0.54 -13.74 16 21 N -0.64 -18.14 10.49 -195.60 -2.05 -20.20 16 22 H 0.06 1.70 7.13 -2.38 -0.02 1.69 16 23 H 0.04 1.70 4.30 -2.39 -0.01 1.69 16 24 H 0.05 1.70 8.12 -2.39 -0.02 1.68 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.03 1.23 2.25 -2.38 -0.01 1.22 16 27 H 0.06 1.92 6.86 -2.39 -0.02 1.91 16 28 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.06 2.18 7.97 -2.39 -0.02 2.16 16 30 H 0.06 2.15 7.97 -2.38 -0.02 2.13 16 31 H 0.41 11.26 6.38 -92.72 -0.59 10.67 16 32 H 0.15 4.30 6.85 -2.91 -0.02 4.28 16 33 H 0.42 5.21 8.94 -92.71 -0.83 4.38 16 34 H 0.42 5.33 8.94 -92.71 -0.83 4.50 16 Total: -1.00 -61.92 286.20 0.29 -61.63 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -1.31 Total: 21.06 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 6.17 Total: 5.47 kcal Atomic # 7 Polarization: -125.19 SS G_CDS: -6.05 Total: -131.24 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.56 Total: 43.46 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -61.92 0.29 -61.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840335611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.259 kcal (2) G-P(sol) polarization free energy of solvation -61.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds