Wall clock time and date at job start Mon Mar 30 2020 01:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48507 * 109.47196 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47333 * 299.99754 * 3 2 1 6 6 H 1.48499 * 109.47491 * 60.00541 * 3 2 1 7 7 C 1.37873 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00189 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99717 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.88906 * 62.42377 * 9 7 2 11 11 C 1.55156 * 111.00417 * 298.53644 * 9 7 2 12 12 C 1.54316 * 102.94559 * 206.42677 * 11 9 7 13 13 N 1.47023 * 107.27276 * 22.19474 * 12 11 9 14 14 C 1.34777 * 125.65037 * 181.01937 * 13 12 11 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99928 * 0.30479 * 14 13 12 17 17 H 1.09001 * 115.55135 * 33.99979 * 16 14 13 18 18 C 1.52999 * 117.49764 * 248.32984 * 16 14 13 19 19 C 1.52990 * 117.49798 * 179.70944 * 16 14 13 20 20 H 1.09005 * 117.50295 * 359.97438 * 19 16 14 21 21 N 1.46500 * 117.49983 * 214.97804 * 19 16 14 22 22 O 1.21802 * 120.00268 * 119.99969 * 21 19 16 23 23 O 1.21796 * 119.99932 * 299.99884 * 21 19 16 24 24 C 1.47423 * 108.69861 * 1.28833 * 13 12 11 25 25 H 0.96995 * 120.00372 * 359.97438 * 1 2 3 26 26 H 0.96701 * 113.99544 * 297.56976 * 10 9 7 27 27 H 1.09004 * 110.71752 * 88.06372 * 11 9 7 28 28 H 1.09000 * 110.87016 * 324.86686 * 11 9 7 29 29 H 1.08997 * 109.88569 * 262.77576 * 12 11 9 30 30 H 1.09008 * 109.88164 * 141.61349 * 12 11 9 31 31 H 1.09007 * 117.49475 * 0.02562 * 18 16 14 32 32 H 1.08997 * 117.49925 * 145.01787 * 18 16 14 33 33 H 1.09004 * 110.36778 * 94.48512 * 24 13 12 34 34 H 1.09006 * 110.36423 * 216.80164 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4616 -2.6316 -1.1831 11 6 0.3733 -2.6345 1.2727 12 6 0.2581 -4.1628 1.4522 13 7 1.3942 -4.7722 0.7455 14 6 1.6418 -6.0935 0.6487 15 8 2.6139 -6.4851 0.0383 16 6 0.7073 -7.0845 1.2935 17 1 -0.3454 -6.8019 1.3011 18 6 1.2347 -7.8764 2.4917 19 6 1.0393 -8.5702 1.1422 20 1 1.9334 -8.8311 0.5759 21 7 -0.0821 -9.5047 1.0182 22 8 -0.1895 -10.1986 0.0230 23 8 -0.9071 -9.5878 1.9104 24 6 2.2212 -3.6983 0.1657 25 1 -0.4850 0.8400 0.0004 26 1 -0.2244 -1.9564 -1.2759 27 1 -0.6090 -2.1899 1.1126 28 1 0.8646 -2.1809 2.1336 29 1 -0.6789 -4.5170 1.0225 30 1 0.3015 -4.4160 2.5116 31 1 2.2575 -7.6803 2.8137 32 1 0.5290 -8.1151 3.2873 33 1 3.0360 -3.4398 0.8421 34 1 2.6146 -4.0039 -0.8039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:07 Heat of formation + Delta-G solvation = -61.977149 kcal Electronic energy + Delta-G solvation = -20876.295306 eV Core-core repulsion = 17392.500517 eV Total energy + Delta-G solvation = -3483.794789 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.43525 -40.08184 -37.99738 -36.79641 -36.20478 -34.52518 -32.35288 -30.16124 -28.71691 -27.92196 -25.80843 -24.02621 -22.49399 -22.15632 -19.96906 -19.43320 -18.95346 -18.55183 -17.47037 -17.31425 -16.88672 -15.65388 -15.44033 -15.08384 -14.49763 -14.11188 -13.83515 -13.23379 -13.14210 -12.45409 -12.27480 -11.98307 -11.81045 -11.59647 -11.58067 -11.48461 -11.46037 -11.20966 -11.11688 -11.01814 -10.78061 -10.54996 -10.19182 -9.89334 -9.54680 -8.81342 -8.37882 -8.31986 -6.40602 -4.49328 0.30817 1.38438 2.24812 2.95303 3.10099 3.11208 3.21215 3.25416 3.60447 3.93448 4.16721 4.25293 4.51687 4.86410 4.88898 5.12089 5.21513 5.32155 5.51366 5.62809 5.81770 6.04420 6.17930 6.21721 6.38751 6.66829 6.73137 7.12448 7.18504 7.48476 7.61006 7.73802 7.86990 8.16972 8.53900 9.16931 9.26088 10.66968 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.044395 B = 0.004046 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.555697 B = 6919.097112 C = 7041.582119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.136 4.136 12 C 0.093 3.907 13 N -0.593 5.593 14 C 0.551 3.449 15 O -0.546 6.546 16 C -0.136 4.136 17 H 0.144 0.856 18 C -0.108 4.108 19 C -0.065 4.065 20 H 0.186 0.814 21 N 0.013 4.987 22 O -0.154 6.154 23 O -0.165 6.165 24 C 0.119 3.881 25 H 0.269 0.731 26 H 0.382 0.618 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.077 0.923 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 -9.519 6.769 11.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.175 4.175 12 C -0.030 4.030 13 N -0.323 5.323 14 C 0.337 3.663 15 O -0.426 6.426 16 C -0.158 4.158 17 H 0.162 0.838 18 C -0.146 4.146 19 C -0.164 4.164 20 H 0.203 0.797 21 N 0.534 4.466 22 O -0.373 6.373 23 O -0.382 6.382 24 C -0.002 4.002 25 H 0.079 0.921 26 H 0.232 0.768 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.095 0.905 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.885 -9.684 6.416 11.650 hybrid contribution -0.331 1.234 0.034 1.278 sum 0.554 -8.449 6.450 10.644 Atomic orbital electron populations 1.69708 1.06007 1.27737 1.49877 1.24984 0.95024 0.99611 0.93273 0.86348 0.80160 0.82597 0.77808 1.19544 1.20693 1.20754 1.21451 0.93795 0.90009 1.52341 0.91567 1.19649 0.86978 0.90597 0.81996 1.86137 1.51590 1.57022 1.44412 1.23205 1.03486 0.89489 1.01313 1.22333 0.88267 0.97267 0.95086 1.48494 1.27466 1.04325 1.52062 1.18620 0.85077 0.81738 0.80898 1.90719 1.29928 1.78457 1.43478 1.22808 1.03227 0.87607 1.02155 0.83832 1.23632 1.05983 0.95340 0.89604 1.25027 0.92494 0.90281 1.08647 0.79736 1.43809 1.02005 1.00924 0.99836 1.94580 1.81210 1.41357 1.20171 1.94528 1.36998 1.73021 1.33629 1.22556 0.93803 0.85651 0.98142 0.92139 0.76763 0.89244 0.91055 0.92118 0.92254 0.84824 0.84403 0.90454 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.91 10.76 55.43 0.60 -21.31 16 2 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 3 Si 0.90 19.34 29.54 -169.99 -5.02 14.31 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.54 -13.26 8.27 -34.44 -0.28 -13.54 16 8 H 0.07 1.63 7.79 -52.48 -0.41 1.23 16 9 C 0.25 5.59 0.87 -89.50 -0.08 5.52 16 10 O -0.58 -14.09 13.17 -35.23 -0.46 -14.56 16 11 C -0.14 -2.68 5.37 -24.90 -0.13 -2.81 16 12 C 0.09 1.49 6.31 -3.07 -0.02 1.47 16 13 N -0.59 -10.54 3.32 -170.38 -0.57 -11.10 16 14 C 0.55 9.15 7.63 -10.98 -0.08 9.06 16 15 O -0.55 -10.66 16.51 5.55 0.09 -10.57 16 16 C -0.14 -1.66 5.43 -91.78 -0.50 -2.16 16 17 H 0.14 1.64 7.66 -51.93 -0.40 1.24 16 18 C -0.11 -0.97 9.72 -26.74 -0.26 -1.23 16 19 C -0.06 -0.76 6.42 -67.94 -0.44 -1.19 16 20 H 0.19 2.15 7.67 -51.93 -0.40 1.75 16 21 N 0.01 0.17 4.33 -4.90 -0.02 0.15 16 22 O -0.15 -2.30 19.24 -29.46 -0.57 -2.87 16 23 O -0.16 -2.22 18.28 -29.46 -0.54 -2.76 16 24 C 0.12 2.46 6.10 -2.41 -0.01 2.44 16 25 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 26 H 0.38 9.22 7.56 45.56 0.34 9.56 16 27 H 0.09 1.86 7.55 -51.93 -0.39 1.47 16 28 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 29 H 0.06 0.92 7.97 -51.93 -0.41 0.51 16 30 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.13 1.03 8.14 -51.92 -0.42 0.61 16 32 H 0.14 1.00 7.63 -51.93 -0.40 0.60 16 33 H 0.08 1.52 8.03 -51.93 -0.42 1.10 16 34 H 0.07 1.64 8.03 -51.93 -0.42 1.22 16 LS Contribution 300.42 15.07 4.53 4.53 Total: -1.00 -27.76 300.42 -7.16 -34.92 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -3.29 Total: 9.98 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.90 Total: -0.72 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.01 Total: -32.27 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -1.48 Total: -30.75 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.76 -7.16 -34.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.056 kcal (2) G-P(sol) polarization free energy of solvation -27.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds