Wall clock time and date at job start Mon Mar 30 2020 01:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48507 * 109.47196 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47333 * 299.99754 * 3 2 1 6 6 H 1.48499 * 109.47491 * 60.00541 * 3 2 1 7 7 C 1.37873 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00189 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99717 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.88906 * 62.42377 * 9 7 2 11 11 C 1.55156 * 111.00417 * 298.53644 * 9 7 2 12 12 C 1.54316 * 102.94559 * 206.42677 * 11 9 7 13 13 N 1.47023 * 107.27276 * 22.19474 * 12 11 9 14 14 C 1.34777 * 125.65037 * 181.01937 * 13 12 11 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99928 * 0.30479 * 14 13 12 17 17 H 1.09001 * 115.55135 * 33.99979 * 16 14 13 18 18 C 1.52999 * 117.49764 * 248.32984 * 16 14 13 19 19 C 1.52990 * 117.49798 * 179.70944 * 16 14 13 20 20 H 1.09005 * 117.50295 * 359.97438 * 19 16 14 21 21 N 1.46500 * 117.49983 * 214.97804 * 19 16 14 22 22 O 1.21802 * 120.00268 * 119.99969 * 21 19 16 23 23 O 1.21796 * 119.99932 * 299.99884 * 21 19 16 24 24 C 1.47423 * 108.69861 * 1.28833 * 13 12 11 25 25 H 0.96995 * 120.00372 * 359.97438 * 1 2 3 26 26 H 0.96701 * 113.99544 * 297.56976 * 10 9 7 27 27 H 1.09004 * 110.71752 * 88.06372 * 11 9 7 28 28 H 1.09000 * 110.87016 * 324.86686 * 11 9 7 29 29 H 1.08997 * 109.88569 * 262.77576 * 12 11 9 30 30 H 1.09008 * 109.88164 * 141.61349 * 12 11 9 31 31 H 1.09007 * 117.49475 * 0.02562 * 18 16 14 32 32 H 1.08997 * 117.49925 * 145.01787 * 18 16 14 33 33 H 1.09004 * 110.36778 * 94.48512 * 24 13 12 34 34 H 1.09006 * 110.36423 * 216.80164 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4616 -2.6316 -1.1831 11 6 0.3733 -2.6345 1.2727 12 6 0.2581 -4.1628 1.4522 13 7 1.3942 -4.7722 0.7455 14 6 1.6418 -6.0935 0.6487 15 8 2.6139 -6.4851 0.0383 16 6 0.7073 -7.0845 1.2935 17 1 -0.3454 -6.8019 1.3011 18 6 1.2347 -7.8764 2.4917 19 6 1.0393 -8.5702 1.1422 20 1 1.9334 -8.8311 0.5759 21 7 -0.0821 -9.5047 1.0182 22 8 -0.1895 -10.1986 0.0230 23 8 -0.9071 -9.5878 1.9104 24 6 2.2212 -3.6983 0.1657 25 1 -0.4850 0.8400 0.0004 26 1 -0.2244 -1.9564 -1.2759 27 1 -0.6090 -2.1899 1.1126 28 1 0.8646 -2.1809 2.1336 29 1 -0.6789 -4.5170 1.0225 30 1 0.3015 -4.4160 2.5116 31 1 2.2575 -7.6803 2.8137 32 1 0.5290 -8.1151 3.2873 33 1 3.0360 -3.4398 0.8421 34 1 2.6146 -4.0039 -0.8039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:06 Heat of formation + Delta-G solvation = -80.726275 kcal Electronic energy + Delta-G solvation = -20877.108329 eV Core-core repulsion = 17392.500517 eV Total energy + Delta-G solvation = -3484.607812 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.45062 -41.39725 -39.43223 -37.90744 -37.30303 -36.18621 -34.24227 -31.72883 -30.21061 -29.04818 -27.37984 -25.33027 -23.65292 -23.28081 -21.63977 -20.56392 -20.09603 -19.56249 -19.11161 -18.54368 -18.14369 -17.03846 -16.89532 -16.74725 -16.15266 -15.49997 -15.02904 -14.80756 -14.21166 -14.04741 -13.66821 -13.51112 -13.26144 -13.07771 -12.79469 -12.68403 -12.63592 -12.51384 -12.45448 -12.28531 -12.26202 -12.11851 -11.88851 -11.33274 -11.21150 -10.66928 -10.18988 -9.74222 -8.26174 -6.41006 -0.75312 0.40811 1.11286 1.40272 1.45797 1.54431 1.75452 2.08673 2.38646 2.63801 2.98252 3.05336 3.19326 3.53343 3.73727 3.94326 4.02846 4.28363 4.32488 4.44992 4.53556 4.55944 4.64264 4.80910 5.12200 5.13615 5.15377 5.41777 5.53336 5.75525 6.04859 6.39497 6.41076 6.63244 6.83684 7.28684 7.36758 8.79789 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.044395 B = 0.004046 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.555697 B = 6919.097112 C = 7041.582119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.040 3.960 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.562 4.562 8 H 0.056 0.944 9 C 0.232 3.768 10 O -0.595 6.595 11 C -0.127 4.127 12 C 0.100 3.900 13 N -0.598 5.598 14 C 0.549 3.451 15 O -0.583 6.583 16 C -0.142 4.142 17 H 0.159 0.841 18 C -0.068 4.068 19 C -0.075 4.075 20 H 0.180 0.820 21 N 0.016 4.984 22 O -0.208 6.208 23 O -0.135 6.135 24 C 0.125 3.875 25 H 0.271 0.729 26 H 0.379 0.621 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.152 0.848 32 H 0.168 0.832 33 H 0.082 0.918 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.963 -9.905 9.041 13.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.162 4.162 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.600 4.600 8 H 0.074 0.926 9 C 0.192 3.808 10 O -0.404 6.404 11 C -0.166 4.166 12 C -0.021 4.021 13 N -0.328 5.328 14 C 0.337 3.663 15 O -0.464 6.464 16 C -0.164 4.164 17 H 0.176 0.824 18 C -0.105 4.105 19 C -0.174 4.174 20 H 0.197 0.803 21 N 0.536 4.464 22 O -0.415 6.415 23 O -0.363 6.363 24 C 0.003 3.997 25 H 0.080 0.920 26 H 0.228 0.772 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.170 0.830 32 H 0.186 0.814 33 H 0.100 0.900 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.405 -10.123 8.597 13.287 hybrid contribution -0.175 1.399 -0.625 1.542 sum 0.230 -8.724 7.973 11.820 Atomic orbital electron populations 1.69769 1.06610 1.28338 1.49735 1.25559 0.95784 1.01898 0.92988 0.85518 0.78898 0.79490 0.77746 1.19826 1.20901 1.19987 1.21693 0.93625 0.91578 1.53129 0.92619 1.19850 0.87714 0.90618 0.82643 1.86127 1.51666 1.56851 1.45743 1.22970 1.01802 0.92402 0.99416 1.22365 0.88029 0.94295 0.97421 1.48502 1.27536 1.04458 1.52299 1.19273 0.85159 0.81673 0.80154 1.90705 1.31807 1.78935 1.44966 1.22674 1.02845 0.86422 1.04440 0.82358 1.23982 1.07577 0.90562 0.88375 1.25099 0.91573 0.89439 1.11330 0.80315 1.44018 1.02128 1.00873 0.99412 1.94605 1.82275 1.43477 1.21145 1.94491 1.36752 1.72051 1.33021 1.22284 0.93977 0.86167 0.97293 0.91956 0.77199 0.90632 0.91408 0.90872 0.88074 0.83045 0.81427 0.89958 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.28 10.76 21.45 0.23 -44.05 16 2 C 0.04 1.93 5.29 84.65 0.45 2.37 16 3 Si 0.96 39.52 29.54 68.60 2.03 41.55 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.56 -28.05 8.27 25.60 0.21 -27.84 16 8 H 0.06 2.81 7.79 -2.91 -0.02 2.79 16 9 C 0.23 10.52 0.87 -10.07 -0.01 10.51 16 10 O -0.60 -29.29 13.17 -148.98 -1.96 -31.25 16 11 C -0.13 -4.87 5.37 31.78 0.17 -4.70 16 12 C 0.10 2.95 6.31 86.73 0.55 3.50 16 13 N -0.60 -20.37 3.32 -811.34 -2.70 -23.07 16 14 C 0.55 17.35 7.63 87.66 0.67 18.02 16 15 O -0.58 -22.55 16.51 -3.04 -0.05 -22.60 16 16 C -0.14 -3.02 5.43 -11.54 -0.06 -3.09 16 17 H 0.16 2.97 7.66 -2.39 -0.02 2.96 16 18 C -0.07 -0.90 9.72 30.59 0.30 -0.60 16 19 C -0.07 -1.56 6.42 44.99 0.29 -1.27 16 20 H 0.18 3.99 7.67 -2.38 -0.02 3.97 16 21 N 0.02 0.40 4.33 -169.41 -0.73 -0.33 16 22 O -0.21 -6.21 19.24 18.88 0.36 -5.85 16 23 O -0.14 -3.19 18.28 18.89 0.35 -2.85 16 24 C 0.13 5.19 6.10 86.93 0.53 5.72 16 25 H 0.27 12.64 8.31 -92.71 -0.77 11.87 16 26 H 0.38 18.65 7.56 -74.06 -0.56 18.09 16 27 H 0.08 3.09 7.55 -2.38 -0.02 3.07 16 28 H 0.07 2.60 8.04 -2.39 -0.02 2.59 16 29 H 0.07 2.00 7.97 -2.39 -0.02 1.98 16 30 H 0.10 2.18 8.14 -2.38 -0.02 2.17 16 31 H 0.15 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.17 1.36 7.63 -2.39 -0.02 1.34 16 33 H 0.08 3.26 8.03 -2.39 -0.02 3.24 16 34 H 0.05 2.19 8.03 -2.38 -0.02 2.17 16 Total: -1.00 -61.07 300.42 1.19 -59.88 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.58 Total: 25.95 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 3.09 Total: 2.61 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -3.20 Total: -67.45 kcal Atomic # 8 Polarization: -61.24 SS G_CDS: -1.30 Total: -62.55 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -61.07 1.19 -59.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.846 kcal (2) G-P(sol) polarization free energy of solvation -61.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds