Wall clock time and date at job start Mon Mar 30 2020 01:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.88414 * 297.57242 * 9 7 2 11 11 C 1.55156 * 111.00296 * 61.45108 * 9 7 2 12 12 C 1.54331 * 102.93936 * 153.57760 * 11 9 7 13 13 N 1.47018 * 107.27103 * 337.80752 * 12 11 9 14 14 C 1.34774 * 125.64894 * 178.95905 * 13 12 11 15 15 O 1.21283 * 120.00163 * 179.97438 * 14 13 12 16 16 C 1.50697 * 120.00197 * 359.97438 * 14 13 12 17 17 H 1.09000 * 115.55169 * 34.27687 * 16 14 13 18 18 C 1.53001 * 117.49893 * 248.60998 * 16 14 13 19 19 C 1.52998 * 117.50320 * 179.97438 * 16 14 13 20 20 H 1.09005 * 117.49832 * 0.02562 * 19 16 14 21 21 N 1.46499 * 117.50210 * 214.97604 * 19 16 14 22 22 O 1.21805 * 119.99806 * 120.00027 * 21 19 16 23 23 O 1.21795 * 120.00038 * 300.00337 * 21 19 16 24 24 C 1.47428 * 108.70593 * 358.94360 * 13 12 11 25 25 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 26 26 H 0.96702 * 113.99716 * 59.30583 * 10 9 7 27 27 H 1.08992 * 110.72379 * 271.93814 * 11 9 7 28 28 H 1.08998 * 110.71874 * 35.04652 * 11 9 7 29 29 H 1.08995 * 109.88292 * 97.22589 * 12 11 9 30 30 H 1.09000 * 109.87959 * 218.23981 * 12 11 9 31 31 H 1.08994 * 117.49759 * 359.97438 * 18 16 14 32 32 H 1.08999 * 117.49849 * 145.01877 * 18 16 14 33 33 H 1.09006 * 110.36332 * 265.28937 * 24 13 12 34 34 H 1.09002 * 110.37011 * 142.96406 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.4617 -2.6316 1.1833 11 6 0.3731 -2.6344 -1.2726 12 6 0.2578 -4.1629 -1.4521 13 7 1.3940 -4.7722 -0.7455 14 6 1.6414 -6.0935 -0.6483 15 8 2.6136 -6.4852 -0.0381 16 6 0.7101 -7.0842 -1.2980 17 1 0.2579 -6.7598 -2.2352 18 6 -0.1308 -7.9716 -0.3779 19 6 1.0456 -8.5698 -1.1523 20 1 1.9399 -8.8307 -0.5862 21 7 0.7346 -9.4477 -2.2832 22 8 1.6248 -10.0719 -2.8324 23 8 -0.4140 -9.5533 -2.6742 24 6 2.2182 -3.6986 -0.1611 25 1 -0.4850 -0.8401 0.0004 26 1 -0.1927 -1.9292 1.3003 27 1 -0.6091 -2.1898 -1.1123 28 1 0.8658 -2.1787 -2.1315 29 1 -0.6791 -4.5170 -1.0222 30 1 0.2985 -4.4158 -2.5115 31 1 -0.0100 -7.8391 0.6972 32 1 -1.1360 -8.2312 -0.7100 33 1 3.0358 -3.4393 -0.8337 34 1 2.6072 -4.0048 0.8100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014903.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:09 Heat of formation + Delta-G solvation = -60.107051 kcal Electronic energy + Delta-G solvation = -20935.760235 eV Core-core repulsion = 17452.046539 eV Total energy + Delta-G solvation = -3483.713696 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.49416 -40.21034 -38.28263 -36.90112 -36.29630 -34.92762 -32.42786 -30.25578 -28.91352 -27.96149 -25.54739 -24.01731 -22.66982 -22.30515 -20.11930 -19.51790 -19.04493 -18.61598 -18.11449 -17.52979 -16.97286 -15.88425 -15.65705 -14.94542 -14.49191 -14.04608 -13.81776 -13.54960 -13.17282 -12.69632 -12.42611 -12.25577 -11.86896 -11.79483 -11.65024 -11.60309 -11.40473 -11.26833 -11.17209 -10.94923 -10.69383 -10.67486 -10.30548 -9.99886 -9.55285 -8.77612 -8.46626 -8.37669 -6.71053 -4.54336 0.24812 1.32283 2.17216 2.82862 3.05384 3.27897 3.29115 3.44334 3.54380 3.87402 4.17041 4.24850 4.40658 4.80452 4.85547 5.08495 5.11378 5.17838 5.35564 5.43716 5.57128 5.81737 6.01957 6.11993 6.24161 6.43199 6.48963 6.73769 6.85069 7.42691 7.59616 7.62003 8.04906 8.05909 8.41508 8.77349 9.18075 10.59982 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.045420 B = 0.004032 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.315710 B = 6941.922579 C = 7068.963713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.033 3.967 3 Si 1.078 2.922 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.614 4.614 8 H 0.062 0.938 9 C 0.229 3.771 10 O -0.583 6.583 11 C -0.152 4.152 12 C 0.097 3.903 13 N -0.595 5.595 14 C 0.552 3.448 15 O -0.544 6.544 16 C -0.137 4.137 17 H 0.143 0.857 18 C -0.106 4.106 19 C -0.065 4.065 20 H 0.186 0.814 21 N 0.013 4.987 22 O -0.154 6.154 23 O -0.164 6.164 24 C 0.127 3.873 25 H 0.268 0.732 26 H 0.372 0.628 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.080 0.920 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 -10.266 -2.746 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.172 4.172 3 Si 0.905 3.095 4 H -0.212 1.212 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.653 4.653 8 H 0.080 0.920 9 C 0.189 3.811 10 O -0.391 6.391 11 C -0.191 4.191 12 C -0.026 4.026 13 N -0.326 5.326 14 C 0.338 3.662 15 O -0.423 6.423 16 C -0.159 4.159 17 H 0.161 0.839 18 C -0.144 4.144 19 C -0.165 4.165 20 H 0.203 0.797 21 N 0.534 4.466 22 O -0.373 6.373 23 O -0.381 6.381 24 C 0.007 3.993 25 H 0.082 0.918 26 H 0.221 0.779 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.098 0.902 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.570 -8.985 -1.753 9.288 hybrid contribution -0.216 -1.336 -0.489 1.439 sum -1.787 -10.321 -2.242 10.712 Atomic orbital electron populations 1.70959 1.06845 1.30483 1.46160 1.25957 0.96344 1.03009 0.91861 0.83400 0.74583 0.74210 0.77299 1.21248 1.20977 1.21031 1.22290 0.95193 0.90873 1.56912 0.91967 1.19908 0.87329 0.92466 0.81374 1.86284 1.53915 1.53542 1.45377 1.23462 1.02506 0.90975 1.02181 1.22218 0.88621 0.96368 0.95349 1.48464 1.27507 1.04414 1.52199 1.18628 0.85049 0.81625 0.80873 1.90727 1.29550 1.78385 1.43607 1.22785 1.01594 0.87356 1.04213 0.83881 1.23653 0.95536 0.95129 1.00047 1.25044 1.06638 0.92256 0.92514 0.79703 1.43812 1.00469 1.00500 1.01804 1.94578 1.40754 1.44482 1.57519 1.94534 1.06082 1.69754 1.67728 1.22395 0.93575 0.85056 0.98322 0.91833 0.77869 0.90175 0.90240 0.91663 0.92165 0.84705 0.84313 0.90236 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.28 12.99 55.43 0.72 -22.56 16 2 C 0.03 0.83 5.27 -17.82 -0.09 0.74 16 3 Si 1.08 22.70 29.90 -169.99 -5.08 17.62 16 4 H -0.29 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.61 -15.36 8.27 -34.44 -0.28 -15.64 16 8 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 9 C 0.23 5.12 0.83 -89.62 -0.07 5.04 16 10 O -0.58 -13.59 13.17 -35.23 -0.46 -14.05 16 11 C -0.15 -2.94 5.32 -24.89 -0.13 -3.08 16 12 C 0.10 1.53 6.28 -3.06 -0.02 1.51 16 13 N -0.59 -10.44 3.33 -170.52 -0.57 -11.01 16 14 C 0.55 9.05 7.63 -10.99 -0.08 8.96 16 15 O -0.54 -10.50 16.51 5.56 0.09 -10.41 16 16 C -0.14 -1.65 5.43 -91.77 -0.50 -2.14 16 17 H 0.14 1.53 7.73 -51.93 -0.40 1.13 16 18 C -0.11 -0.99 9.72 -26.72 -0.26 -1.25 16 19 C -0.06 -0.74 6.43 -67.92 -0.44 -1.18 16 20 H 0.19 2.12 7.67 -51.93 -0.40 1.72 16 21 N 0.01 0.17 4.33 -4.88 -0.02 0.14 16 22 O -0.15 -2.23 19.24 -29.46 -0.57 -2.79 16 23 O -0.16 -2.16 18.28 -29.46 -0.54 -2.70 16 24 C 0.13 2.62 6.08 -2.53 -0.02 2.61 16 25 H 0.27 6.57 3.72 -40.82 -0.15 6.42 16 26 H 0.37 8.54 6.64 45.56 0.30 8.85 16 27 H 0.08 1.58 6.45 -51.93 -0.34 1.24 16 28 H 0.08 1.58 8.03 -51.93 -0.42 1.16 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 31 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.14 1.05 7.63 -51.93 -0.40 0.66 16 33 H 0.08 1.61 8.03 -51.93 -0.42 1.19 16 34 H 0.08 1.67 8.04 -51.93 -0.42 1.25 16 LS Contribution 296.42 15.07 4.47 4.47 Total: -1.00 -28.81 296.42 -6.96 -35.77 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -3.10 Total: 9.95 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.90 Total: -4.43 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.13 Total: -33.43 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -1.48 Total: -29.95 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.08 Total: 17.62 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.81 -6.96 -35.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014903.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.340 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds