Wall clock time and date at job start Mon Mar 30 2020 01:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.88414 * 297.57242 * 9 7 2 11 11 C 1.55156 * 111.00296 * 61.45108 * 9 7 2 12 12 C 1.54331 * 102.93936 * 153.57760 * 11 9 7 13 13 N 1.47018 * 107.27103 * 337.80752 * 12 11 9 14 14 C 1.34774 * 125.64894 * 178.95905 * 13 12 11 15 15 O 1.21283 * 120.00163 * 179.97438 * 14 13 12 16 16 C 1.50697 * 120.00197 * 359.97438 * 14 13 12 17 17 H 1.09000 * 115.55169 * 34.27687 * 16 14 13 18 18 C 1.53001 * 117.49893 * 248.60998 * 16 14 13 19 19 C 1.52998 * 117.50320 * 179.97438 * 16 14 13 20 20 H 1.09005 * 117.49832 * 0.02562 * 19 16 14 21 21 N 1.46499 * 117.50210 * 214.97604 * 19 16 14 22 22 O 1.21805 * 119.99806 * 120.00027 * 21 19 16 23 23 O 1.21795 * 120.00038 * 300.00337 * 21 19 16 24 24 C 1.47428 * 108.70593 * 358.94360 * 13 12 11 25 25 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 26 26 H 0.96702 * 113.99716 * 59.30583 * 10 9 7 27 27 H 1.08992 * 110.72379 * 271.93814 * 11 9 7 28 28 H 1.08998 * 110.71874 * 35.04652 * 11 9 7 29 29 H 1.08995 * 109.88292 * 97.22589 * 12 11 9 30 30 H 1.09000 * 109.87959 * 218.23981 * 12 11 9 31 31 H 1.08994 * 117.49759 * 359.97438 * 18 16 14 32 32 H 1.08999 * 117.49849 * 145.01877 * 18 16 14 33 33 H 1.09006 * 110.36332 * 265.28937 * 24 13 12 34 34 H 1.09002 * 110.37011 * 142.96406 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.4617 -2.6316 1.1833 11 6 0.3731 -2.6344 -1.2726 12 6 0.2578 -4.1629 -1.4521 13 7 1.3940 -4.7722 -0.7455 14 6 1.6414 -6.0935 -0.6483 15 8 2.6136 -6.4852 -0.0381 16 6 0.7101 -7.0842 -1.2980 17 1 0.2579 -6.7598 -2.2352 18 6 -0.1308 -7.9716 -0.3779 19 6 1.0456 -8.5698 -1.1523 20 1 1.9399 -8.8307 -0.5862 21 7 0.7346 -9.4477 -2.2832 22 8 1.6248 -10.0719 -2.8324 23 8 -0.4140 -9.5533 -2.6742 24 6 2.2182 -3.6986 -0.1611 25 1 -0.4850 -0.8401 0.0004 26 1 -0.1927 -1.9292 1.3003 27 1 -0.6091 -2.1898 -1.1123 28 1 0.8658 -2.1787 -2.1315 29 1 -0.6791 -4.5170 -1.0222 30 1 0.2985 -4.4158 -2.5115 31 1 -0.0100 -7.8391 0.6972 32 1 -1.1360 -8.2312 -0.7100 33 1 3.0358 -3.4393 -0.8337 34 1 2.6072 -4.0048 0.8100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014903.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:09 Heat of formation + Delta-G solvation = -79.410143 kcal Electronic energy + Delta-G solvation = -20936.597280 eV Core-core repulsion = 17452.046539 eV Total energy + Delta-G solvation = -3484.550740 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.48426 -41.53367 -39.74471 -37.98407 -37.36606 -36.54077 -34.32105 -31.79697 -30.41230 -29.04893 -27.09548 -25.43714 -23.87774 -23.32771 -21.80068 -20.63688 -20.19194 -19.92923 -19.57305 -18.61197 -18.19980 -17.30955 -16.96182 -16.52559 -16.01322 -15.74262 -15.11492 -14.85667 -14.41265 -14.26031 -13.86453 -13.67093 -13.45824 -13.04484 -12.82761 -12.67299 -12.61591 -12.52163 -12.44675 -12.31132 -12.24852 -12.15347 -11.95651 -11.35405 -11.29876 -10.64783 -10.20690 -9.86288 -8.67072 -6.51814 -0.78534 0.35938 1.03268 1.56105 1.60779 1.63069 1.79662 2.04100 2.50205 2.58918 2.93745 2.99498 3.10492 3.46328 3.51418 3.73576 3.95521 4.03083 4.13959 4.35476 4.39470 4.47883 4.50649 4.64496 4.89381 4.94746 5.11552 5.12983 5.20090 5.77886 6.04918 6.27910 6.38083 6.49382 6.73834 6.95047 7.25810 8.66273 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.045420 B = 0.004032 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.315710 B = 6941.922579 C = 7068.963713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.002 4.002 3 Si 1.116 2.884 4 H -0.281 1.281 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.635 4.635 8 H 0.048 0.952 9 C 0.215 3.785 10 O -0.590 6.590 11 C -0.145 4.145 12 C 0.103 3.897 13 N -0.599 5.599 14 C 0.550 3.450 15 O -0.580 6.580 16 C -0.139 4.139 17 H 0.165 0.835 18 C -0.075 4.075 19 C -0.070 4.070 20 H 0.180 0.820 21 N 0.017 4.983 22 O -0.202 6.202 23 O -0.138 6.138 24 C 0.133 3.867 25 H 0.268 0.732 26 H 0.370 0.630 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.145 0.855 32 H 0.168 0.832 33 H 0.075 0.925 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 -10.871 -3.390 12.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.204 4.204 3 Si 0.939 3.061 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.673 4.673 8 H 0.066 0.934 9 C 0.175 3.825 10 O -0.398 6.398 11 C -0.183 4.183 12 C -0.018 4.018 13 N -0.330 5.330 14 C 0.339 3.661 15 O -0.461 6.461 16 C -0.161 4.161 17 H 0.183 0.817 18 C -0.113 4.113 19 C -0.170 4.170 20 H 0.198 0.802 21 N 0.536 4.464 22 O -0.410 6.410 23 O -0.365 6.365 24 C 0.010 3.990 25 H 0.082 0.918 26 H 0.220 0.780 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.163 0.837 32 H 0.186 0.814 33 H 0.093 0.907 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.074 -9.645 -2.425 10.409 hybrid contribution 0.225 -1.138 -0.229 1.183 sum -2.849 -10.783 -2.655 11.464 Atomic orbital electron populations 1.71007 1.07257 1.30766 1.47096 1.26985 0.96586 1.05554 0.91229 0.82898 0.74026 0.71597 0.77603 1.20596 1.20672 1.20132 1.22568 0.94872 0.92681 1.57217 0.93402 1.20024 0.88119 0.92039 0.82271 1.86264 1.53943 1.53380 1.46245 1.23242 1.01203 0.93980 0.99910 1.22288 0.88786 0.93352 0.97388 1.48466 1.27614 1.04480 1.52397 1.19299 0.85100 0.81550 0.80162 1.90714 1.31332 1.78870 1.45211 1.22680 1.01601 0.86213 1.05635 0.81723 1.23952 0.95850 0.91302 1.00172 1.25069 1.08085 0.91564 0.92275 0.80240 1.43983 1.00197 1.00377 1.01807 1.94603 1.41066 1.46441 1.58863 1.94503 1.06025 1.68794 1.67182 1.22089 0.93665 0.85802 0.97431 0.91814 0.78042 0.90672 0.91239 0.89257 0.88762 0.83747 0.81430 0.90653 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.21 12.99 21.45 0.28 -46.93 16 2 C 0.00 -0.11 5.27 84.65 0.45 0.34 16 3 Si 1.12 45.55 29.90 68.60 2.05 47.60 16 4 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.64 -32.20 8.27 25.60 0.21 -31.99 16 8 H 0.05 2.49 7.79 -2.91 -0.02 2.46 16 9 C 0.22 9.64 0.83 -10.15 -0.01 9.63 16 10 O -0.59 -27.57 13.17 -148.98 -1.96 -29.54 16 11 C -0.14 -5.43 5.32 31.79 0.17 -5.26 16 12 C 0.10 2.95 6.28 86.73 0.54 3.49 16 13 N -0.60 -20.12 3.33 -811.78 -2.70 -22.82 16 14 C 0.55 17.11 7.63 87.66 0.67 17.78 16 15 O -0.58 -22.22 16.51 -3.04 -0.05 -22.27 16 16 C -0.14 -2.88 5.43 -11.54 -0.06 -2.94 16 17 H 0.17 2.75 7.73 -2.39 -0.02 2.73 16 18 C -0.08 -1.10 9.72 30.60 0.30 -0.80 16 19 C -0.07 -1.43 6.43 45.00 0.29 -1.15 16 20 H 0.18 3.92 7.67 -2.38 -0.02 3.90 16 21 N 0.02 0.40 4.33 -169.36 -0.73 -0.34 16 22 O -0.20 -5.70 19.24 18.88 0.36 -5.33 16 23 O -0.14 -3.17 18.28 18.89 0.35 -2.82 16 24 C 0.13 5.51 6.08 86.85 0.53 6.04 16 25 H 0.27 13.15 3.72 -92.71 -0.35 12.80 16 26 H 0.37 17.14 6.64 -74.06 -0.49 16.65 16 27 H 0.07 2.88 6.45 -2.39 -0.02 2.87 16 28 H 0.07 2.71 8.03 -2.39 -0.02 2.70 16 29 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.09 2.10 8.06 -2.39 -0.02 2.08 16 31 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.17 1.58 7.63 -2.39 -0.02 1.56 16 33 H 0.08 3.13 8.03 -2.38 -0.02 3.11 16 34 H 0.05 2.42 8.04 -2.39 -0.02 2.40 16 Total: -1.00 -62.75 296.42 1.75 -61.00 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 1.07 Total: 26.31 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 3.08 Total: -4.86 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: -3.16 Total: -70.08 kcal Atomic # 8 Polarization: -58.66 SS G_CDS: -1.30 Total: -59.96 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.05 Total: 47.60 kcal Total: -62.75 1.75 -61.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014903.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.407 kcal (2) G-P(sol) polarization free energy of solvation -62.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds