Wall clock time and date at job start Mon Mar 30 2020 00:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86802 * 119.99520 * 2 1 4 4 H 1.48495 * 109.47162 * 270.00130 * 3 2 1 5 5 H 1.48499 * 109.47018 * 30.00444 * 3 2 1 6 6 H 1.48505 * 109.46897 * 150.00083 * 3 2 1 7 7 C 1.38744 * 120.00593 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99728 * 359.97438 * 7 2 1 9 9 O 1.34918 * 120.00422 * 180.02562 * 7 2 1 10 10 C 1.34314 * 117.00291 * 180.02562 * 9 7 2 11 11 O 1.21212 * 119.99952 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99859 * 179.97438 * 10 9 7 13 13 C 1.53006 * 109.47079 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47294 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47170 * 180.02562 * 14 13 12 16 16 C 1.38425 * 120.02136 * 90.00332 * 15 14 13 17 17 F 1.35101 * 120.01402 * 359.70506 * 16 15 14 18 18 C 1.38476 * 119.97328 * 179.97438 * 16 15 14 19 19 C 1.38207 * 120.02410 * 0.02562 * 18 16 15 20 20 C 1.38207 * 120.05360 * 359.97438 * 19 18 16 21 21 C 1.38412 * 120.02814 * 269.97965 * 15 14 13 22 22 F 1.35096 * 120.01191 * 0.02562 * 21 15 14 23 23 H 0.96998 * 120.00716 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47479 * 59.99968 * 12 10 9 25 25 H 1.08994 * 109.47373 * 299.99295 * 12 10 9 26 26 H 1.09008 * 109.46613 * 60.00213 * 13 12 10 27 27 H 1.08994 * 109.47241 * 300.00894 * 13 12 10 28 28 H 1.09008 * 109.46866 * 60.00674 * 14 13 12 29 29 H 1.09006 * 109.47655 * 300.00535 * 14 13 12 30 30 H 1.08001 * 119.98752 * 179.97438 * 18 16 15 31 31 H 1.08000 * 119.97200 * 180.02562 * 19 18 16 32 32 H 1.07995 * 119.99247 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5459 1.4403 0.7001 7 6 2.0082 -1.2015 -0.0005 8 1 1.4683 -2.1368 -0.0005 9 8 3.3574 -1.2015 0.0000 10 6 3.9673 -2.3981 -0.0011 11 8 3.3072 -3.4148 -0.0020 12 6 5.4722 -2.4769 -0.0012 13 6 5.9062 -3.9441 -0.0019 14 6 7.4340 -4.0240 -0.0026 15 6 7.8614 -5.4692 -0.0040 16 6 8.0574 -6.1323 -1.2031 17 9 7.8598 -5.4861 -2.3729 18 6 8.4506 -7.4601 -1.2032 19 6 8.6469 -8.1232 -0.0066 20 6 8.4516 -7.4621 1.1913 21 6 8.0588 -6.1342 1.1938 22 9 7.8679 -5.4882 2.3648 23 1 -0.4851 0.8400 0.0004 24 1 5.8619 -1.9835 0.8892 25 1 5.8619 -1.9820 -0.8907 26 1 5.5164 -4.4378 -0.8922 27 1 5.5164 -4.4387 0.8877 28 1 7.8241 -3.5303 0.8875 29 1 7.8234 -3.5295 -0.8926 30 1 8.6032 -7.9779 -2.1386 31 1 8.9540 -9.1587 -0.0076 32 1 8.6048 -7.9814 2.1257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848818395.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:38 Heat of formation + Delta-G solvation = -160.134580 kcal Electronic energy + Delta-G solvation = -19639.633991 eV Core-core repulsion = 16008.202510 eV Total energy + Delta-G solvation = -3631.431481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.16990 -49.16839 -39.30132 -39.02223 -35.86568 -34.65781 -32.26555 -31.36879 -30.55069 -27.54613 -25.28559 -23.11199 -23.04768 -21.26144 -19.57280 -18.35805 -17.91570 -17.57724 -16.71457 -16.24689 -15.99648 -15.79586 -15.49908 -15.41258 -14.87495 -14.60999 -14.12874 -13.99517 -13.54442 -12.99860 -12.85050 -12.42960 -12.35673 -12.13733 -12.01969 -11.82110 -11.47533 -11.13168 -11.08787 -10.57447 -10.42366 -10.32321 -9.66044 -9.13868 -9.04967 -9.01879 -8.63975 -6.32635 -4.08254 0.69776 0.70984 3.07252 3.18137 3.26679 3.38987 3.46782 3.65780 4.09588 4.15679 4.28091 4.34146 4.40406 4.55901 4.85840 5.08729 5.16293 5.23835 5.33782 5.50624 5.52323 5.66891 5.69810 5.74743 5.82772 5.85282 5.87674 6.31364 6.43723 6.48146 6.55838 7.79697 8.08375 8.67836 9.06308 9.74503 10.76172 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034041 B = 0.003659 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.348845 B = 7649.913057 C = 7820.589479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.382 4.382 8 H 0.108 0.892 9 O -0.255 6.255 10 C 0.409 3.591 11 O -0.541 6.541 12 C -0.104 4.104 13 C -0.098 4.098 14 C -0.083 4.083 15 C -0.146 4.146 16 C 0.131 3.869 17 F -0.127 7.127 18 C -0.164 4.164 19 C -0.069 4.069 20 C -0.164 4.164 21 C 0.131 3.869 22 F -0.127 7.127 23 H 0.279 0.721 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.425 -12.725 0.005 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.457 4.457 8 H 0.126 0.874 9 O -0.164 6.164 10 C 0.254 3.746 11 O -0.436 6.436 12 C -0.142 4.142 13 C -0.135 4.135 14 C -0.120 4.120 15 C -0.148 4.148 16 C 0.112 3.888 17 F -0.105 7.105 18 C -0.183 4.183 19 C -0.087 4.087 20 C -0.183 4.183 21 C 0.112 3.888 22 F -0.105 7.105 23 H 0.089 0.911 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 21.032 -12.786 0.008 24.614 hybrid contribution 0.051 0.933 -0.015 0.935 sum 21.084 -11.853 -0.007 24.187 Atomic orbital electron populations 1.69609 1.05711 1.28313 1.48071 1.24549 0.95012 0.98659 0.95661 0.86209 0.80281 0.81515 0.78874 1.19900 1.20809 1.18421 1.20650 0.76347 0.96918 1.51829 0.87423 1.83525 1.23868 1.31589 1.77375 1.23020 0.90735 0.82537 0.78266 1.90595 1.67225 1.36321 1.49468 1.21115 0.90453 0.98007 1.04597 1.21304 0.92390 0.95683 1.04164 1.20566 0.97080 0.90126 1.04220 1.19959 1.04850 0.98847 0.91168 1.17234 1.00131 0.90708 0.80733 1.91540 1.92354 1.81437 1.45181 1.21216 1.03748 0.93030 1.00293 1.20817 0.97209 1.00129 0.90553 1.21216 1.03735 0.93056 1.00279 1.17231 1.00152 0.90710 0.80708 1.91538 1.92456 1.81444 1.45075 0.91112 0.88872 0.88866 0.90843 0.90840 0.89806 0.89809 0.84053 0.84022 0.84053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.57 13.96 55.48 0.77 -25.80 16 2 C 0.06 1.89 5.49 -17.53 -0.10 1.79 16 3 Si 0.91 21.84 28.62 -169.99 -4.86 16.97 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.26 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.38 -11.69 10.10 30.92 0.31 -11.37 16 8 H 0.11 3.63 7.09 -52.49 -0.37 3.26 16 9 O -0.25 -6.92 8.58 -20.70 -0.18 -7.09 16 10 C 0.41 9.83 7.91 36.00 0.28 10.11 16 11 O -0.54 -14.74 15.22 -19.05 -0.29 -15.03 16 12 C -0.10 -1.74 5.81 -27.88 -0.16 -1.90 16 13 C -0.10 -1.50 4.49 -26.73 -0.12 -1.61 16 14 C -0.08 -0.99 4.99 -27.89 -0.14 -1.13 16 15 C -0.15 -1.70 5.15 -104.49 -0.54 -2.24 16 16 C 0.13 1.44 7.24 -39.42 -0.29 1.16 16 17 F -0.13 -1.54 16.48 2.25 0.04 -1.50 16 18 C -0.16 -1.38 10.03 -39.50 -0.40 -1.77 16 19 C -0.07 -0.49 10.04 -39.60 -0.40 -0.89 16 20 C -0.16 -1.38 10.03 -39.50 -0.40 -1.77 16 21 C 0.13 1.45 7.24 -39.43 -0.29 1.16 16 22 F -0.13 -1.54 16.48 2.25 0.04 -1.50 16 23 H 0.28 7.69 8.31 -40.82 -0.34 7.35 16 24 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.07 1.21 8.10 -51.92 -0.42 0.79 16 27 H 0.07 1.22 8.10 -51.93 -0.42 0.79 16 28 H 0.08 0.92 7.64 -51.92 -0.40 0.52 16 29 H 0.08 0.92 7.64 -51.93 -0.40 0.52 16 30 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 296.49 15.07 4.47 4.47 Total: -1.00 -34.16 296.49 -5.49 -39.65 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -3.26 Total: -1.71 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -2.22 Total: -8.47 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.77 Total: -25.80 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.47 Total: -22.12 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.07 Total: -3.00 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.86 Total: 16.97 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.16 -5.49 -39.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848818395.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.481 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds