Wall clock time and date at job start Mon Mar 30 2020 00:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86802 * 119.99520 * 2 1 4 4 H 1.48495 * 109.47162 * 270.00130 * 3 2 1 5 5 H 1.48499 * 109.47018 * 30.00444 * 3 2 1 6 6 H 1.48505 * 109.46897 * 150.00083 * 3 2 1 7 7 C 1.38744 * 120.00593 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99728 * 359.97438 * 7 2 1 9 9 O 1.34918 * 120.00422 * 180.02562 * 7 2 1 10 10 C 1.34314 * 117.00291 * 180.02562 * 9 7 2 11 11 O 1.21212 * 119.99952 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99859 * 179.97438 * 10 9 7 13 13 C 1.53006 * 109.47079 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47294 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47170 * 180.02562 * 14 13 12 16 16 C 1.38425 * 120.02136 * 90.00332 * 15 14 13 17 17 F 1.35101 * 120.01402 * 359.70506 * 16 15 14 18 18 C 1.38476 * 119.97328 * 179.97438 * 16 15 14 19 19 C 1.38207 * 120.02410 * 0.02562 * 18 16 15 20 20 C 1.38207 * 120.05360 * 359.97438 * 19 18 16 21 21 C 1.38412 * 120.02814 * 269.97965 * 15 14 13 22 22 F 1.35096 * 120.01191 * 0.02562 * 21 15 14 23 23 H 0.96998 * 120.00716 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47479 * 59.99968 * 12 10 9 25 25 H 1.08994 * 109.47373 * 299.99295 * 12 10 9 26 26 H 1.09008 * 109.46613 * 60.00213 * 13 12 10 27 27 H 1.08994 * 109.47241 * 300.00894 * 13 12 10 28 28 H 1.09008 * 109.46866 * 60.00674 * 14 13 12 29 29 H 1.09006 * 109.47655 * 300.00535 * 14 13 12 30 30 H 1.08001 * 119.98752 * 179.97438 * 18 16 15 31 31 H 1.08000 * 119.97200 * 180.02562 * 19 18 16 32 32 H 1.07995 * 119.99247 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5459 1.4403 0.7001 7 6 2.0082 -1.2015 -0.0005 8 1 1.4683 -2.1368 -0.0005 9 8 3.3574 -1.2015 0.0000 10 6 3.9673 -2.3981 -0.0011 11 8 3.3072 -3.4148 -0.0020 12 6 5.4722 -2.4769 -0.0012 13 6 5.9062 -3.9441 -0.0019 14 6 7.4340 -4.0240 -0.0026 15 6 7.8614 -5.4692 -0.0040 16 6 8.0574 -6.1323 -1.2031 17 9 7.8598 -5.4861 -2.3729 18 6 8.4506 -7.4601 -1.2032 19 6 8.6469 -8.1232 -0.0066 20 6 8.4516 -7.4621 1.1913 21 6 8.0588 -6.1342 1.1938 22 9 7.8679 -5.4882 2.3648 23 1 -0.4851 0.8400 0.0004 24 1 5.8619 -1.9835 0.8892 25 1 5.8619 -1.9820 -0.8907 26 1 5.5164 -4.4378 -0.8922 27 1 5.5164 -4.4387 0.8877 28 1 7.8241 -3.5303 0.8875 29 1 7.8234 -3.5295 -0.8926 30 1 8.6032 -7.9779 -2.1386 31 1 8.9540 -9.1587 -0.0076 32 1 8.6048 -7.9814 2.1257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848818395.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:37 Heat of formation + Delta-G solvation = -180.436759 kcal Electronic energy + Delta-G solvation = -19640.514360 eV Core-core repulsion = 16008.202510 eV Total energy + Delta-G solvation = -3632.311850 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.00890 -50.00549 -41.20683 -39.87211 -37.70426 -36.02524 -34.52109 -32.46199 -31.24216 -28.89309 -27.16811 -24.25724 -23.84376 -22.28251 -21.36473 -20.16261 -19.14503 -18.58731 -18.38951 -17.18373 -17.13606 -16.97476 -16.57124 -16.56374 -16.29615 -15.85552 -15.49935 -15.41170 -14.70915 -14.61005 -14.07688 -13.73148 -13.59135 -13.56575 -13.06965 -12.95828 -12.64104 -12.63368 -12.37625 -12.27193 -12.04406 -11.86311 -11.76640 -11.14514 -10.85029 -9.84691 -9.74040 -8.56414 -6.44114 -0.01514 -0.00773 1.29118 1.33376 1.52813 1.58022 2.26165 2.33624 2.48673 2.89373 2.91494 3.43872 3.44642 3.66968 3.88890 4.00574 4.02709 4.14363 4.24731 4.50503 4.51832 4.65606 4.73151 4.84727 4.91896 4.96980 5.07136 5.17807 5.22210 5.23176 5.47423 5.80973 5.88086 6.52633 6.80850 7.57394 8.56916 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034041 B = 0.003659 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.348845 B = 7649.913057 C = 7820.589479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.248 1.248 7 C -0.413 4.413 8 H 0.053 0.947 9 O -0.259 6.259 10 C 0.405 3.595 11 O -0.581 6.581 12 C -0.092 4.092 13 C -0.090 4.090 14 C -0.074 4.074 15 C -0.168 4.168 16 C 0.108 3.892 17 F -0.139 7.139 18 C -0.160 4.160 19 C -0.057 4.057 20 C -0.160 4.160 21 C 0.108 3.892 22 F -0.139 7.139 23 H 0.290 0.710 24 H 0.125 0.875 25 H 0.126 0.874 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.165 0.835 31 H 0.182 0.818 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.377 -12.415 -0.006 27.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.171 1.171 7 C -0.489 4.489 8 H 0.071 0.929 9 O -0.168 6.168 10 C 0.253 3.747 11 O -0.477 6.477 12 C -0.130 4.130 13 C -0.128 4.128 14 C -0.111 4.111 15 C -0.170 4.170 16 C 0.089 3.911 17 F -0.118 7.118 18 C -0.179 4.179 19 C -0.074 4.074 20 C -0.179 4.179 21 C 0.089 3.911 22 F -0.118 7.118 23 H 0.100 0.900 24 H 0.143 0.857 25 H 0.144 0.856 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.182 0.818 31 H 0.199 0.801 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 23.984 -12.503 -0.003 27.047 hybrid contribution -0.879 0.610 -0.013 1.070 sum 23.105 -11.893 -0.016 25.986 Atomic orbital electron populations 1.69710 1.07706 1.30305 1.48196 1.25652 0.96036 1.02930 0.93999 0.85016 0.79018 0.75356 0.79906 1.18291 1.18947 1.17150 1.20326 0.78028 0.95702 1.54853 0.92922 1.83538 1.21817 1.33025 1.78447 1.24669 0.93527 0.81152 0.75387 1.90578 1.68926 1.37521 1.50669 1.21344 0.84378 0.99665 1.07580 1.21212 0.95049 0.94281 1.02258 1.20446 0.94047 0.91251 1.05336 1.19987 1.06289 0.98797 0.91885 1.17547 1.01536 0.91878 0.80167 1.91502 1.92673 1.81868 1.45743 1.21590 1.02294 0.91977 1.02014 1.21301 0.95193 1.01615 0.89304 1.21590 1.02284 0.92003 1.02000 1.17545 1.01564 0.91881 0.80143 1.91500 1.92775 1.81876 1.45640 0.90038 0.85693 0.85591 0.92811 0.92830 0.88654 0.88635 0.81776 0.80079 0.81779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.95 13.96 21.62 0.30 -56.65 16 2 C 0.01 0.80 5.49 84.87 0.47 1.26 16 3 Si 0.99 44.31 28.62 68.60 1.96 46.28 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.41 -26.35 10.10 67.94 0.69 -25.66 16 8 H 0.05 3.83 7.09 -2.91 -0.02 3.81 16 9 O -0.26 -14.22 8.58 14.86 0.13 -14.09 16 10 C 0.40 19.82 7.91 71.23 0.56 20.39 16 11 O -0.58 -33.23 15.22 20.77 0.32 -32.91 16 12 C -0.09 -2.97 5.81 29.85 0.17 -2.80 16 13 C -0.09 -2.75 4.49 30.59 0.14 -2.61 16 14 C -0.07 -1.68 4.99 29.85 0.15 -1.53 16 15 C -0.17 -3.78 5.15 -19.78 -0.10 -3.88 16 16 C 0.11 2.27 7.24 22.37 0.16 2.43 16 17 F -0.14 -3.31 16.48 44.97 0.74 -2.57 16 18 C -0.16 -2.30 10.03 22.32 0.22 -2.08 16 19 C -0.06 -0.61 10.04 22.25 0.22 -0.38 16 20 C -0.16 -2.30 10.03 22.32 0.22 -2.08 16 21 C 0.11 2.27 7.24 22.37 0.16 2.43 16 22 F -0.14 -3.31 16.48 44.97 0.74 -2.57 16 23 H 0.29 16.10 8.31 -92.71 -0.77 15.33 16 24 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 25 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 26 H 0.05 1.82 8.10 -2.38 -0.02 1.81 16 27 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 28 H 0.09 1.93 7.64 -2.38 -0.02 1.91 16 29 H 0.10 1.93 7.64 -2.38 -0.02 1.91 16 30 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.18 0.52 8.06 -2.91 -0.02 0.50 16 32 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -79.18 296.49 8.40 -70.77 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 1.15 Total: 6.26 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 3.07 Total: -14.52 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.30 Total: -56.65 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: 0.44 Total: -47.00 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 1.48 Total: -5.14 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.96 Total: 46.28 kcal Total: -79.18 8.40 -70.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848818395.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.662 kcal (2) G-P(sol) polarization free energy of solvation -79.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds