Wall clock time and date at job start Mon Mar 30 2020 01:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35351 * 117.00128 * 2 1 4 4 C 1.36143 * 125.57184 * 179.97438 * 3 2 1 5 5 C 1.39835 * 107.19099 * 179.97438 * 4 3 2 6 6 C 1.37953 * 106.66941 * 359.97438 * 5 4 3 7 7 C 1.41617 * 126.03623 * 179.97438 * 6 5 4 8 8 O 1.21698 * 120.00350 * 0.02562 * 7 6 5 9 9 O 1.34984 * 119.99827 * 180.02562 * 7 6 5 10 10 C 1.42906 * 116.99829 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46809 * 180.02562 * 10 9 7 12 12 O 1.42895 * 109.47166 * 65.00224 * 11 10 9 13 13 C 1.42903 * 114.00153 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47485 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99798 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00312 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99828 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00127 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47363 * 60.00244 * 18 16 14 20 20 H 1.48505 * 109.47101 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47012 * 299.99904 * 18 16 14 22 22 O 1.34000 * 125.56651 * 359.97438 * 3 2 1 23 23 H 1.09000 * 109.46865 * 60.00126 * 1 2 3 24 24 H 1.08998 * 109.46541 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47152 * 299.99798 * 1 2 3 26 26 H 1.07997 * 126.40632 * 0.02562 * 4 3 2 27 27 H 1.07999 * 126.66267 * 179.73985 * 5 4 3 28 28 H 1.08999 * 109.47125 * 300.00387 * 10 9 7 29 29 H 1.08996 * 109.46930 * 60.00077 * 10 9 7 30 30 H 1.09004 * 109.46749 * 184.99655 * 11 10 9 31 31 H 1.08996 * 109.47078 * 305.00002 * 11 10 9 32 32 H 1.09002 * 109.46996 * 299.99970 * 13 12 11 33 33 H 1.09001 * 109.47141 * 59.99207 * 13 12 11 34 34 H 0.96995 * 119.99671 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 3.3898 1.4089 0.0005 5 6 3.5994 2.7914 -0.0003 6 6 2.3521 3.3808 -0.0019 7 6 2.0880 4.7721 -0.0026 8 8 3.0099 5.5665 -0.0023 9 8 0.8136 5.2172 -0.0036 10 6 0.6210 6.6332 -0.0048 11 6 -0.8771 6.9440 -0.0052 12 8 -1.4592 6.4844 1.2162 13 6 -2.8636 6.7277 1.3184 14 6 -3.3694 6.2048 2.6381 15 1 -2.6865 5.7340 3.3299 16 6 -4.7037 6.3282 2.9630 17 7 -5.5351 6.9018 2.1208 18 14 -5.3304 5.6806 4.5992 19 1 -4.6258 6.3726 5.7081 20 1 -6.7897 5.9344 4.7058 21 1 -5.0739 4.2203 4.6845 22 8 1.4262 2.3953 -0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 4.1531 0.6449 0.0006 27 1 4.5526 3.2992 0.0037 28 1 1.0808 7.0632 0.8850 29 1 1.0816 7.0617 -0.8949 30 1 -1.0248 8.0202 -0.0957 31 1 -1.3525 6.4399 -0.8466 32 1 -3.0522 7.7995 1.2555 33 1 -3.3806 6.2196 0.5044 34 1 -6.4739 6.9883 2.3492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848851468.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:24 Heat of formation + Delta-G solvation = -174.561260 kcal Electronic energy + Delta-G solvation = -20001.669941 eV Core-core repulsion = 16480.700388 eV Total energy + Delta-G solvation = -3520.969554 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.00130 -41.55364 -39.66047 -38.81145 -37.64447 -34.97314 -34.41711 -32.09701 -30.84926 -29.09544 -28.34500 -25.18211 -24.53934 -23.41274 -23.12757 -21.81341 -20.06322 -19.19616 -18.73376 -18.45158 -18.01041 -17.86234 -17.07947 -16.52377 -16.41562 -16.24681 -15.83765 -15.47886 -14.62130 -14.42914 -14.34504 -14.15015 -14.02711 -13.76464 -13.26522 -13.08858 -12.96555 -12.72635 -12.60325 -12.50996 -12.14207 -11.87338 -11.76241 -11.32346 -11.21928 -10.91908 -10.30422 -9.35863 -8.34344 -6.46969 -0.41211 1.03711 1.14950 1.38471 1.43077 1.51695 1.64213 1.78765 2.12799 2.32674 2.99391 3.03676 3.63367 3.73184 3.90435 4.07909 4.11977 4.20123 4.21254 4.36325 4.40873 4.47815 4.61622 4.64184 4.77677 4.82235 5.13746 5.14852 5.22526 5.33302 5.51400 5.92391 5.94008 6.46205 6.54851 6.76419 7.24614 8.77740 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.004279 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.433517 B = 6541.646160 C = 7783.493266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.259 6.259 3 C 0.229 3.771 4 C -0.238 4.238 5 C -0.034 4.034 6 C -0.136 4.136 7 C 0.552 3.448 8 O -0.516 6.516 9 O -0.354 6.354 10 C 0.076 3.924 11 C 0.054 3.946 12 O -0.411 6.411 13 C 0.208 3.792 14 C -0.553 4.553 15 H 0.058 0.942 16 C 0.010 3.990 17 N -0.928 5.928 18 Si 0.982 3.018 19 H -0.266 1.266 20 H -0.272 1.272 21 H -0.266 1.266 22 O -0.195 6.195 23 H 0.065 0.935 24 H 0.146 0.854 25 H 0.059 0.941 26 H 0.203 0.797 27 H 0.197 0.803 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.054 0.946 32 H -0.006 1.006 33 H -0.011 1.011 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.020 -12.345 -6.644 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.173 6.173 3 C 0.130 3.870 4 C -0.257 4.257 5 C -0.054 4.054 6 C -0.184 4.184 7 C 0.401 3.599 8 O -0.409 6.409 9 O -0.270 6.270 10 C 0.002 3.998 11 C -0.023 4.023 12 O -0.332 6.332 13 C 0.133 3.867 14 C -0.591 4.591 15 H 0.076 0.924 16 C -0.189 4.189 17 N -0.567 5.567 18 Si 0.805 3.195 19 H -0.191 1.191 20 H -0.197 1.197 21 H -0.191 1.191 22 O -0.095 6.095 23 H 0.084 0.916 24 H 0.164 0.836 25 H 0.078 0.922 26 H 0.220 0.780 27 H 0.214 0.786 28 H 0.092 0.908 29 H 0.130 0.870 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.012 0.988 33 H 0.006 0.994 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.919 -12.243 -6.534 21.119 hybrid contribution -1.093 0.307 0.339 1.185 sum 14.826 -11.937 -6.195 20.017 Atomic orbital electron populations 1.23505 0.74717 1.07224 1.02904 1.86411 1.24890 1.17768 1.88197 1.21518 0.90536 0.78386 0.96532 1.21249 0.91986 0.96933 1.15514 1.22487 0.97083 0.93090 0.92716 1.19618 0.88205 0.85157 1.25391 1.18110 0.81350 0.86997 0.73409 1.90912 1.45461 1.55443 1.49108 1.86345 1.28954 1.28129 1.83573 1.22917 0.95676 0.77053 1.04152 1.22669 0.91673 0.99697 0.88266 1.87865 1.24780 1.82541 1.37976 1.19881 0.76377 0.94123 0.96328 1.21345 0.94528 1.40179 1.03014 0.92355 1.25929 0.96089 0.94925 1.01967 1.70051 1.04830 1.43856 1.37998 0.85255 0.77316 0.79073 0.77901 1.19074 1.19681 1.19089 1.84107 1.37912 1.14758 1.72770 0.91601 0.83563 0.92246 0.78039 0.78575 0.90775 0.86993 0.89566 0.92766 0.98819 0.99359 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 10.74 113.37 1.22 1.38 16 2 O -0.26 -5.02 10.55 -64.20 -0.68 -5.69 16 3 C 0.23 5.17 7.86 67.33 0.53 5.70 16 4 C -0.24 -4.21 10.89 22.17 0.24 -3.97 16 5 C -0.03 -0.71 10.58 22.59 0.24 -0.47 16 6 C -0.14 -3.91 7.00 23.04 0.16 -3.75 16 7 C 0.55 18.25 7.73 68.65 0.53 18.78 16 8 O -0.52 -17.42 16.57 19.19 0.32 -17.10 16 9 O -0.35 -13.03 10.06 -54.13 -0.54 -13.57 16 10 C 0.08 2.48 5.76 71.98 0.41 2.89 16 11 C 0.05 2.02 6.32 71.98 0.45 2.48 16 12 O -0.41 -20.93 10.29 -144.34 -1.49 -22.41 16 13 C 0.21 11.86 5.69 71.24 0.41 12.26 16 14 C -0.55 -33.56 9.43 25.60 0.24 -33.32 16 15 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 16 C 0.01 0.57 5.46 84.65 0.46 1.03 16 17 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 18 Si 0.98 44.52 29.54 68.60 2.03 46.54 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 O -0.20 -5.68 10.14 16.38 0.17 -5.51 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.20 2.09 8.06 -2.91 -0.02 2.06 16 27 H 0.20 2.94 8.06 -2.91 -0.02 2.91 16 28 H 0.07 2.46 8.13 -2.39 -0.02 2.44 16 29 H 0.11 2.88 8.13 -2.39 -0.02 2.87 16 30 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -73.89 314.69 6.09 -67.80 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: 1.11 Total: 2.41 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 4.90 Total: 3.01 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.28 Total: -55.48 kcal Atomic # 8 Polarization: -62.07 SS G_CDS: -2.22 Total: -64.29 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -73.89 6.09 -67.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848851468.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.763 kcal (2) G-P(sol) polarization free energy of solvation -73.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds