Wall clock time and date at job start Mon Mar 30 2020 01:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39905 * 109.46952 * 2 1 4 4 F 1.39898 * 109.47248 * 240.00358 * 2 1 3 5 5 C 1.52994 * 109.47057 * 119.99985 * 2 1 3 6 6 O 1.45200 * 109.47190 * 60.00266 * 5 2 1 7 7 C 1.34701 * 117.00169 * 179.97438 * 6 5 2 8 8 O 1.21471 * 120.00074 * 0.02562 * 7 6 5 9 9 C 1.47769 * 120.00069 * 179.97438 * 7 6 5 10 10 C 1.39960 * 120.03302 * 359.97438 * 9 7 6 11 11 C 1.38317 * 120.35753 * 180.02562 * 10 9 7 12 12 C 1.37755 * 120.41703 * 359.97438 * 11 10 9 13 13 C 1.40757 * 120.05004 * 0.02562 * 12 11 10 14 14 C 1.41439 * 120.17704 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99698 * 24.41558 * 14 13 12 16 16 C 1.39932 * 120.00172 * 204.41934 * 14 13 12 17 17 N 1.30824 * 120.00201 * 17.84828 * 16 14 13 18 18 Si 1.86806 * 119.99927 * 197.84744 * 16 14 13 19 19 H 1.48496 * 109.47243 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46953 * 120.00169 * 18 16 14 21 21 H 1.48506 * 109.46942 * 240.00042 * 18 16 14 22 22 C 1.39059 * 120.03051 * 180.02562 * 9 7 6 23 23 H 1.08997 * 109.47554 * 299.99782 * 1 2 3 24 24 H 1.08998 * 109.47365 * 59.99705 * 1 2 3 25 25 H 1.08999 * 109.47257 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47581 * 300.00017 * 5 2 1 27 27 H 1.09004 * 109.47091 * 180.02562 * 5 2 1 28 28 H 1.08008 * 119.82112 * 359.97438 * 10 9 7 29 29 H 1.08005 * 119.79035 * 180.02562 * 11 10 9 30 30 H 1.08001 * 119.97827 * 179.97438 * 12 11 10 31 31 H 0.96997 * 120.00007 * 179.97438 * 17 16 14 32 32 H 1.07997 * 120.20114 * 359.70048 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0399 -0.7212 1.2492 6 8 1.5560 -2.0902 1.2492 7 6 1.9183 -2.8670 2.2883 8 8 2.6190 -2.4130 3.1706 9 6 1.4625 -4.2710 2.3555 10 6 0.6538 -4.7943 1.3401 11 6 0.2228 -6.1074 1.3965 12 6 0.5847 -6.9155 2.4518 13 6 1.3975 -6.4071 3.4825 14 6 1.7702 -7.2342 4.5676 15 1 1.7895 -8.3074 4.4468 16 6 2.1138 -6.6623 5.7976 17 7 1.7673 -5.4295 6.0653 18 14 3.0672 -7.6591 7.0573 19 1 3.3360 -9.0151 6.5150 20 1 4.3547 -6.9809 7.3536 21 1 2.2694 -7.7735 8.3047 22 6 1.8358 -5.0733 3.4282 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.6766 -0.2074 2.1393 27 1 3.1300 -0.7208 1.2494 28 1 0.3640 -4.1691 0.5084 29 1 -0.4006 -6.5019 0.6077 30 1 0.2439 -7.9396 2.4889 31 1 2.0052 -5.0332 6.9181 32 1 2.4630 -4.6751 4.2121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861226907.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:11 Heat of formation + Delta-G solvation = -191.417966 kcal Electronic energy + Delta-G solvation = -20059.376326 eV Core-core repulsion = 16426.588295 eV Total energy + Delta-G solvation = -3632.788031 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.14339 -48.15419 -41.57824 -39.24700 -37.68212 -35.63567 -33.49559 -32.14000 -31.37352 -28.65829 -27.25266 -25.05062 -22.93483 -22.77252 -21.67551 -19.77373 -18.88144 -18.36687 -18.13958 -17.65464 -17.29478 -17.05583 -16.56835 -16.30574 -15.25359 -15.12253 -14.95923 -14.73639 -14.50216 -14.38794 -14.06803 -13.81798 -13.51974 -13.43550 -13.17932 -13.00908 -12.82038 -12.59255 -12.22820 -12.19809 -12.05311 -11.91817 -11.55209 -11.35885 -11.10464 -9.63964 -9.45470 -8.70033 -6.40596 0.07684 0.95622 1.24929 1.38428 1.44502 1.54228 1.73879 2.18936 2.59321 2.70621 2.97494 3.19786 3.43784 3.61829 3.83320 4.04466 4.13883 4.42020 4.57660 4.62059 4.69792 4.81519 5.01022 5.03761 5.09372 5.12204 5.27017 5.42925 5.79276 5.88091 6.00258 6.22079 6.51919 6.68098 6.85198 6.87439 8.27744 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030529 B = 0.004430 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.943890 B = 6318.530951 C = 6981.739449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.299 3.701 3 F -0.191 7.191 4 F -0.202 7.202 5 C 0.017 3.983 6 O -0.334 6.334 7 C 0.521 3.479 8 O -0.540 6.540 9 C -0.127 4.127 10 C -0.179 4.179 11 C -0.098 4.098 12 C -0.202 4.202 13 C 0.066 3.934 14 C -0.494 4.494 15 H 0.087 0.913 16 C 0.032 3.968 17 N -0.826 5.826 18 Si 0.982 3.018 19 H -0.251 1.251 20 H -0.271 1.271 21 H -0.264 1.264 22 C -0.123 4.123 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.135 0.865 29 H 0.142 0.858 30 H 0.115 0.885 31 H 0.288 0.712 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 7.504 -8.376 11.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.263 3.737 3 F -0.172 7.172 4 F -0.183 7.183 5 C -0.058 4.058 6 O -0.251 6.251 7 C 0.369 3.631 8 O -0.431 6.431 9 C -0.129 4.129 10 C -0.198 4.198 11 C -0.116 4.116 12 C -0.222 4.222 13 C 0.064 3.936 14 C -0.523 4.523 15 H 0.105 0.895 16 C -0.183 4.183 17 N -0.452 5.452 18 Si 0.803 3.197 19 H -0.174 1.174 20 H -0.196 1.196 21 H -0.189 1.189 22 C -0.143 4.143 23 H 0.123 0.877 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.131 0.869 27 H 0.105 0.895 28 H 0.153 0.847 29 H 0.160 0.840 30 H 0.133 0.867 31 H 0.099 0.901 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.690 7.871 -7.984 11.530 hybrid contribution 0.829 0.032 0.845 1.184 sum -1.861 7.903 -7.139 10.811 Atomic orbital electron populations 1.22808 0.88070 1.06868 1.06951 1.20892 0.96184 0.74830 0.81784 1.93040 1.91010 1.36579 1.96618 1.93031 1.90758 1.81088 1.53462 1.23999 1.01634 0.80940 0.99264 1.86504 1.69672 1.23223 1.45697 1.21700 0.76264 0.87040 0.78080 1.90771 1.37510 1.75130 1.39705 1.19002 1.05515 0.88919 0.99439 1.20979 1.03125 0.96693 0.99042 1.20974 0.99454 0.93318 0.97867 1.21523 1.02419 1.00532 0.97699 1.17890 0.90414 0.91841 0.93485 1.19899 1.41822 0.95269 0.95277 0.89459 1.26827 0.94113 0.96030 1.01359 1.69860 1.35320 1.15681 1.24322 0.85152 0.78108 0.79340 0.77134 1.17438 1.19568 1.18907 1.21471 1.01215 0.95123 0.96450 0.87670 0.87992 0.88440 0.86938 0.89500 0.84682 0.84033 0.86672 0.90116 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 9.24 71.98 0.67 -2.57 16 2 C 0.30 6.87 2.35 30.59 0.07 6.94 16 3 F -0.19 -4.38 17.06 44.97 0.77 -3.61 16 4 F -0.20 -5.42 17.01 44.97 0.76 -4.66 16 5 C 0.02 0.46 5.11 71.98 0.37 0.83 16 6 O -0.33 -11.37 8.74 -56.11 -0.49 -11.86 16 7 C 0.52 22.43 7.90 70.34 0.56 22.99 16 8 O -0.54 -25.97 16.12 19.93 0.32 -25.65 16 9 C -0.13 -5.93 5.87 -20.14 -0.12 -6.05 16 10 C -0.18 -7.15 9.62 22.71 0.22 -6.93 16 11 C -0.10 -3.80 10.01 22.17 0.22 -3.58 16 12 C -0.20 -9.04 9.78 22.77 0.22 -8.82 16 13 C 0.07 3.44 5.57 -21.32 -0.12 3.32 16 14 C -0.49 -25.77 9.05 23.47 0.21 -25.56 16 15 H 0.09 4.29 7.91 -2.91 -0.02 4.27 16 16 C 0.03 1.59 5.14 85.25 0.44 2.03 16 17 N -0.83 -44.13 10.95 21.82 0.24 -43.89 16 18 Si 0.98 38.03 29.60 68.60 2.03 40.06 16 19 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 20 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 21 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 22 C -0.12 -6.55 8.23 23.02 0.19 -6.36 16 23 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.10 1.78 7.68 -2.39 -0.02 1.76 16 26 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 27 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 28 H 0.14 4.53 7.59 -2.91 -0.02 4.51 16 29 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 30 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 31 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 32 H 0.11 6.22 5.74 -2.91 -0.02 6.21 16 Total: -1.00 -61.42 294.55 7.71 -53.71 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 1.15 Total: 19.66 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: 2.93 Total: -23.75 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.24 Total: -43.89 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -0.17 Total: -37.51 kcal Atomic # 9 Polarization: -9.81 SS G_CDS: 1.53 Total: -8.27 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -61.42 7.71 -53.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861226907.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.707 kcal (2) G-P(sol) polarization free energy of solvation -61.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds