Wall clock time and date at job start Mon Mar 30 2020 00:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86798 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46860 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47593 * 300.00120 * 3 2 1 6 6 H 1.48501 * 109.47353 * 60.00616 * 3 2 1 7 7 C 1.38750 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00144 * 179.97438 * 7 2 1 9 9 O 1.34918 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.34314 * 116.99913 * 179.97438 * 9 7 2 11 11 O 1.21209 * 119.99973 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00224 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.47112 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.46730 * 180.02562 * 13 12 10 15 15 C 1.38238 * 119.99767 * 90.00546 * 14 13 12 16 16 C 1.38235 * 120.00108 * 179.97438 * 15 14 13 17 17 C 1.38243 * 119.99617 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99586 * 179.97438 * 17 16 15 19 19 F 1.39901 * 109.46962 * 209.99766 * 18 17 16 20 20 F 1.39894 * 109.47464 * 329.99846 * 18 17 16 21 21 C 1.38233 * 120.00248 * 0.25361 * 17 16 15 22 22 C 1.38234 * 120.00185 * 270.01952 * 14 13 12 23 23 H 0.97003 * 120.00580 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46834 * 60.00266 * 12 10 9 25 25 H 1.09005 * 109.46893 * 300.00512 * 12 10 9 26 26 H 1.09000 * 109.46955 * 60.00355 * 13 12 10 27 27 H 1.09000 * 109.46884 * 299.99670 * 13 12 10 28 28 H 1.08000 * 120.00559 * 359.97438 * 15 14 13 29 29 H 1.07999 * 120.00165 * 179.97438 * 16 15 14 30 30 H 1.08999 * 109.47015 * 90.00128 * 18 17 16 31 31 H 1.08004 * 119.99934 * 179.72684 * 21 17 16 32 32 H 1.07999 * 119.99990 * 0.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3465 -0.0006 5 1 1.8895 2.3966 -1.2125 6 1 1.8896 2.3964 1.2126 7 6 2.0082 -1.2016 -0.0005 8 1 3.0881 -1.2016 -0.0010 9 8 1.3336 -2.3700 -0.0005 10 6 2.0652 -3.4965 -0.0016 11 8 3.2756 -3.4330 -0.0020 12 6 1.3810 -4.8393 -0.0011 13 6 2.4348 -5.9485 -0.0019 14 6 1.7507 -7.2912 -0.0020 15 6 1.4365 -7.9067 -1.1993 16 6 0.8094 -9.1386 -1.1995 17 6 0.4960 -9.7548 -0.0023 18 6 -0.1882 -11.0976 -0.0025 19 9 -0.9871 -11.2141 1.1400 20 9 -0.9879 -11.2134 -1.1445 21 6 0.8050 -9.1367 1.1949 22 6 1.4370 -7.9073 1.1951 23 1 -0.4851 0.8400 -0.0004 24 1 0.7573 -4.9296 -0.8905 25 1 0.7592 -4.9299 0.8896 26 1 3.0582 -5.8580 0.8877 27 1 3.0569 -5.8580 -0.8924 28 1 1.6809 -7.4252 -2.1346 29 1 0.5636 -9.6193 -2.1348 30 1 0.5625 -11.8879 -0.0030 31 1 0.5561 -9.6161 2.1302 32 1 1.6819 -7.4261 2.1304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869669805.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:51 Heat of formation + Delta-G solvation = -172.191529 kcal Electronic energy + Delta-G solvation = -19202.851459 eV Core-core repulsion = 15570.897149 eV Total energy + Delta-G solvation = -3631.954310 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.23964 -47.25880 -39.66441 -38.87740 -35.50551 -34.05125 -32.13998 -31.13621 -30.61006 -26.91521 -25.27227 -23.53286 -22.93253 -21.00538 -19.68570 -17.84960 -17.73104 -17.68373 -17.41056 -16.65369 -15.55892 -15.27667 -14.75482 -14.69371 -14.41991 -14.30205 -14.06449 -13.80292 -13.40414 -13.32277 -12.92926 -12.91801 -12.43932 -11.90971 -11.64537 -11.48561 -11.41231 -11.17846 -10.95361 -10.72182 -10.40292 -10.37161 -9.79497 -9.12687 -9.12097 -8.81813 -8.58081 -6.40747 -4.08884 0.95103 1.21236 3.09872 3.18967 3.26432 3.38983 3.53882 3.54052 3.92746 3.96166 4.32056 4.49349 4.64566 4.79142 4.81605 5.02603 5.11527 5.27392 5.31261 5.39477 5.50527 5.65422 5.84319 5.91293 6.11888 6.17763 6.18500 6.36849 6.57090 6.75862 6.79799 7.40310 7.95895 8.71835 9.08166 9.86421 10.77376 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.044202 B = 0.002983 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.305062 B = 9385.399443 C = 9544.256438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.383 4.383 8 H 0.096 0.904 9 O -0.216 6.216 10 C 0.397 3.603 11 O -0.559 6.559 12 C -0.097 4.097 13 C -0.070 4.070 14 C -0.053 4.053 15 C -0.117 4.117 16 C -0.085 4.085 17 C -0.182 4.182 18 C 0.315 3.685 19 F -0.201 7.201 20 F -0.201 7.201 21 C -0.085 4.085 22 C -0.117 4.117 23 H 0.269 0.731 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.328 -20.409 -0.004 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.459 4.459 8 H 0.113 0.887 9 O -0.123 6.123 10 C 0.243 3.757 11 O -0.457 6.457 12 C -0.135 4.135 13 C -0.108 4.108 14 C -0.053 4.053 15 C -0.135 4.135 16 C -0.103 4.103 17 C -0.183 4.183 18 C 0.262 3.738 19 F -0.182 7.182 20 F -0.182 7.182 21 C -0.103 4.103 22 C -0.135 4.135 23 H 0.079 0.921 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.405 -20.225 -0.003 20.229 hybrid contribution 0.166 0.794 -0.001 0.811 sum 0.571 -19.431 -0.004 19.440 Atomic orbital electron populations 1.70002 1.06004 1.27561 1.46701 1.25342 0.95809 0.98886 0.96247 0.85625 0.79456 0.80116 0.78120 1.18962 1.20177 1.20173 1.21272 0.92382 0.79917 1.52320 0.88654 1.83883 1.39450 1.13455 1.75508 1.23168 0.86687 0.87321 0.78501 1.90550 1.15768 1.88193 1.51160 1.21040 0.98319 0.89394 1.04756 1.20443 0.96836 0.88607 1.04888 1.20194 0.95965 0.96020 0.93091 1.21129 0.99096 0.94957 0.98302 1.20892 0.97112 0.95266 0.97055 1.20351 1.05364 0.97056 0.95546 1.20295 0.85197 0.97333 0.71011 1.92993 1.76765 1.97168 1.51297 1.92992 1.76721 1.97174 1.51333 1.20892 0.97091 0.95277 0.97060 1.21129 0.99058 0.94994 0.98304 0.92137 0.89010 0.89014 0.89849 0.89860 0.85087 0.85248 0.86332 0.85245 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.54 13.67 55.48 0.76 -24.78 16 2 C 0.04 1.16 5.49 -17.53 -0.10 1.07 16 3 Si 0.94 21.36 29.55 -169.99 -5.02 16.33 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.38 -11.38 9.64 30.92 0.30 -11.08 16 8 H 0.10 2.85 6.86 -52.49 -0.36 2.49 16 9 O -0.22 -6.21 9.75 -20.70 -0.20 -6.41 16 10 C 0.40 9.61 7.91 36.01 0.28 9.89 16 11 O -0.56 -14.68 15.22 -19.05 -0.29 -14.97 16 12 C -0.10 -1.69 5.79 -27.88 -0.16 -1.85 16 13 C -0.07 -1.02 4.63 -27.89 -0.13 -1.15 16 14 C -0.05 -0.65 5.13 -104.63 -0.54 -1.19 16 15 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 16 C -0.09 -0.88 9.40 -39.58 -0.37 -1.25 16 17 C -0.18 -1.85 5.74 -104.62 -0.60 -2.45 16 18 C 0.32 2.71 5.65 36.01 0.20 2.91 16 19 F -0.20 -2.06 16.48 2.25 0.04 -2.02 16 20 F -0.20 -2.06 16.48 2.25 0.04 -2.02 16 21 C -0.09 -0.88 9.40 -39.58 -0.37 -1.25 16 22 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 23 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 25 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 26 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 27 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 28 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.13 1.11 7.60 -52.49 -0.40 0.71 16 30 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.13 1.11 7.60 -52.48 -0.40 0.71 16 32 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 297.65 15.07 4.49 4.49 Total: -1.00 -33.71 297.65 -5.69 -39.40 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -3.24 Total: -0.28 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -2.25 Total: -9.74 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.76 Total: -24.78 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.49 Total: -21.38 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.07 Total: -4.04 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.71 -5.69 -39.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869669805.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.789 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds