Wall clock time and date at job start Mon Mar 30 2020 00:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86798 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46860 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47593 * 300.00120 * 3 2 1 6 6 H 1.48501 * 109.47353 * 60.00616 * 3 2 1 7 7 C 1.38750 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00144 * 179.97438 * 7 2 1 9 9 O 1.34918 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.34314 * 116.99913 * 179.97438 * 9 7 2 11 11 O 1.21209 * 119.99973 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00224 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.47112 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.46730 * 180.02562 * 13 12 10 15 15 C 1.38238 * 119.99767 * 90.00546 * 14 13 12 16 16 C 1.38235 * 120.00108 * 179.97438 * 15 14 13 17 17 C 1.38243 * 119.99617 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99586 * 179.97438 * 17 16 15 19 19 F 1.39901 * 109.46962 * 209.99766 * 18 17 16 20 20 F 1.39894 * 109.47464 * 329.99846 * 18 17 16 21 21 C 1.38233 * 120.00248 * 0.25361 * 17 16 15 22 22 C 1.38234 * 120.00185 * 270.01952 * 14 13 12 23 23 H 0.97003 * 120.00580 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46834 * 60.00266 * 12 10 9 25 25 H 1.09005 * 109.46893 * 300.00512 * 12 10 9 26 26 H 1.09000 * 109.46955 * 60.00355 * 13 12 10 27 27 H 1.09000 * 109.46884 * 299.99670 * 13 12 10 28 28 H 1.08000 * 120.00559 * 359.97438 * 15 14 13 29 29 H 1.07999 * 120.00165 * 179.97438 * 16 15 14 30 30 H 1.08999 * 109.47015 * 90.00128 * 18 17 16 31 31 H 1.08004 * 119.99934 * 179.72684 * 21 17 16 32 32 H 1.07999 * 119.99990 * 0.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3465 -0.0006 5 1 1.8895 2.3966 -1.2125 6 1 1.8896 2.3964 1.2126 7 6 2.0082 -1.2016 -0.0005 8 1 3.0881 -1.2016 -0.0010 9 8 1.3336 -2.3700 -0.0005 10 6 2.0652 -3.4965 -0.0016 11 8 3.2756 -3.4330 -0.0020 12 6 1.3810 -4.8393 -0.0011 13 6 2.4348 -5.9485 -0.0019 14 6 1.7507 -7.2912 -0.0020 15 6 1.4365 -7.9067 -1.1993 16 6 0.8094 -9.1386 -1.1995 17 6 0.4960 -9.7548 -0.0023 18 6 -0.1882 -11.0976 -0.0025 19 9 -0.9871 -11.2141 1.1400 20 9 -0.9879 -11.2134 -1.1445 21 6 0.8050 -9.1367 1.1949 22 6 1.4370 -7.9073 1.1951 23 1 -0.4851 0.8400 -0.0004 24 1 0.7573 -4.9296 -0.8905 25 1 0.7592 -4.9299 0.8896 26 1 3.0582 -5.8580 0.8877 27 1 3.0569 -5.8580 -0.8924 28 1 1.6809 -7.4252 -2.1346 29 1 0.5636 -9.6193 -2.1348 30 1 0.5625 -11.8879 -0.0030 31 1 0.5561 -9.6161 2.1302 32 1 1.6819 -7.4261 2.1304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869669805.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:51 Heat of formation + Delta-G solvation = -191.051640 kcal Electronic energy + Delta-G solvation = -19203.669295 eV Core-core repulsion = 15570.897149 eV Total energy + Delta-G solvation = -3632.772146 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.95384 -47.98530 -41.11234 -40.31478 -37.45169 -35.30501 -34.30618 -31.94923 -31.74995 -28.25911 -26.98826 -24.75709 -23.75087 -22.13777 -21.29106 -19.89021 -18.69565 -18.43744 -18.35511 -18.15097 -17.04910 -16.75263 -16.21955 -16.03026 -15.96347 -15.39380 -14.82909 -14.64183 -14.62775 -14.40388 -14.07049 -14.00044 -13.75388 -13.61387 -13.08874 -12.86745 -12.68952 -12.42306 -12.27209 -12.16749 -11.97503 -11.83783 -11.77588 -11.06802 -10.70841 -9.93756 -9.77965 -8.54868 -6.35144 0.09535 0.39285 1.29526 1.34089 1.52703 1.64300 2.11309 2.53481 2.83299 2.86215 2.96348 3.30294 3.59235 3.91189 3.91277 3.99580 4.04874 4.09255 4.22512 4.45780 4.51185 4.58145 4.83996 4.85797 4.86293 5.09483 5.14664 5.18290 5.32634 5.38426 5.63780 5.82732 5.91882 6.66776 6.90513 7.76661 8.66153 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.044202 B = 0.002983 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.305062 B = 9385.399443 C = 9544.256438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.006 4.006 3 Si 1.018 2.982 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.422 4.422 8 H 0.082 0.918 9 O -0.249 6.249 10 C 0.395 3.605 11 O -0.582 6.582 12 C -0.086 4.086 13 C -0.058 4.058 14 C -0.067 4.067 15 C -0.123 4.123 16 C -0.089 4.089 17 C -0.183 4.183 18 C 0.313 3.687 19 F -0.211 7.211 20 F -0.211 7.211 21 C -0.089 4.089 22 C -0.123 4.123 23 H 0.279 0.721 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.146 0.854 30 H 0.161 0.839 31 H 0.146 0.854 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 -21.306 -0.005 21.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.206 4.206 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.498 4.498 8 H 0.100 0.900 9 O -0.157 6.157 10 C 0.243 3.757 11 O -0.480 6.480 12 C -0.124 4.124 13 C -0.096 4.096 14 C -0.067 4.067 15 C -0.141 4.141 16 C -0.106 4.106 17 C -0.184 4.184 18 C 0.260 3.740 19 F -0.192 7.192 20 F -0.192 7.192 21 C -0.106 4.106 22 C -0.141 4.141 23 H 0.088 0.912 24 H 0.126 0.874 25 H 0.126 0.874 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.164 0.836 30 H 0.178 0.822 31 H 0.164 0.836 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.362 -21.152 -0.004 21.155 hybrid contribution 0.169 0.928 0.000 0.944 sum 0.531 -20.224 -0.005 20.231 Atomic orbital electron populations 1.70082 1.07674 1.29320 1.47074 1.26556 0.96887 1.02423 0.94704 0.84567 0.77788 0.74733 0.79257 1.18822 1.18428 1.18419 1.21463 0.92153 0.81289 1.54873 0.90043 1.83909 1.40552 1.14395 1.76868 1.24519 0.86744 0.88392 0.76030 1.90517 1.17146 1.88718 1.51668 1.21186 0.99010 0.86004 1.06182 1.20284 0.95975 0.89028 1.04299 1.19975 0.97444 0.95166 0.94136 1.21281 0.99054 0.95469 0.98270 1.21099 0.96664 0.94884 0.97995 1.20628 1.04633 0.97704 0.95401 1.20675 0.85414 0.97692 0.70196 1.92974 1.77198 1.97179 1.51871 1.92973 1.77155 1.97185 1.51907 1.21099 0.96649 0.94900 0.98000 1.21280 0.99016 0.95501 0.98273 0.91201 0.87411 0.87414 0.90499 0.90509 0.84326 0.83591 0.82205 0.83597 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.86 13.67 21.62 0.30 -53.56 16 2 C -0.01 -0.33 5.49 84.87 0.47 0.14 16 3 Si 1.02 43.63 29.55 68.60 2.03 45.66 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 7 C -0.42 -25.84 9.64 67.94 0.66 -25.19 16 8 H 0.08 5.06 6.86 -2.91 -0.02 5.04 16 9 O -0.25 -14.75 9.75 14.86 0.14 -14.61 16 10 C 0.39 19.58 7.91 71.24 0.56 20.14 16 11 O -0.58 -31.40 15.22 20.78 0.32 -31.08 16 12 C -0.09 -2.98 5.79 29.85 0.17 -2.81 16 13 C -0.06 -1.68 4.63 29.85 0.14 -1.54 16 14 C -0.07 -1.58 5.13 -19.87 -0.10 -1.68 16 15 C -0.12 -2.58 9.70 22.27 0.22 -2.36 16 16 C -0.09 -1.63 9.40 22.27 0.21 -1.42 16 17 C -0.18 -3.26 5.74 -19.86 -0.11 -3.37 16 18 C 0.31 4.51 5.65 71.24 0.40 4.91 16 19 F -0.21 -3.82 16.48 44.97 0.74 -3.08 16 20 F -0.21 -3.82 16.48 44.97 0.74 -3.08 16 21 C -0.09 -1.63 9.40 22.27 0.21 -1.42 16 22 C -0.12 -2.58 9.70 22.27 0.22 -2.36 16 23 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 24 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 25 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 26 H 0.08 2.28 8.04 -2.39 -0.02 2.26 16 27 H 0.08 2.28 8.04 -2.39 -0.02 2.26 16 28 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 29 H 0.15 2.15 7.60 -2.91 -0.02 2.13 16 30 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.15 2.15 7.60 -2.91 -0.02 2.13 16 32 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -73.99 297.65 8.44 -65.55 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.14 Total: 11.18 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 3.03 Total: -16.97 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.30 Total: -53.56 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: 0.46 Total: -45.69 kcal Atomic # 9 Polarization: -7.65 SS G_CDS: 1.48 Total: -6.17 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -73.99 8.44 -65.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869669805.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.505 kcal (2) G-P(sol) polarization free energy of solvation -73.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds