Wall clock time and date at job start Mon Mar 30 2020 00:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38464 * 119.83224 * 2 1 4 4 C 1.37824 * 120.24633 * 180.02562 * 3 2 1 5 5 C 1.39742 * 119.92380 * 0.02562 * 4 3 2 6 6 C 1.47569 * 120.16537 * 180.02562 * 5 4 3 7 7 O 1.21484 * 120.00137 * 180.02562 * 6 5 4 8 8 O 1.34730 * 119.99986 * 359.97438 * 6 5 4 9 9 C 1.45194 * 117.00038 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47510 * 330.00884 * 9 8 6 11 11 C 1.53006 * 109.46979 * 90.00641 * 9 8 6 12 12 C 1.50699 * 109.47218 * 210.00299 * 9 8 6 13 13 H 1.07999 * 120.00019 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99908 * 180.02562 * 12 9 8 15 15 N 1.31510 * 120.00364 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99946 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.47324 * 59.99539 * 16 14 12 18 18 H 1.48494 * 109.47376 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46921 * 299.99915 * 16 14 12 20 20 C 1.39826 * 119.67424 * 0.27135 * 5 4 3 21 21 F 1.35102 * 120.12116 * 179.70011 * 20 5 4 22 22 C 1.38384 * 119.84339 * 180.02562 * 2 1 3 23 23 F 1.35105 * 119.95773 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47502 * 89.99887 * 1 2 3 25 25 H 1.09004 * 109.46315 * 209.99795 * 1 2 3 26 26 H 1.08995 * 109.47371 * 329.99233 * 1 2 3 27 27 H 1.08001 * 119.88035 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.04342 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.47002 * 299.99655 * 11 9 8 30 30 H 1.08993 * 109.46955 * 60.00092 * 11 9 8 31 31 H 1.09000 * 109.47050 * 179.97438 * 11 9 8 32 32 H 0.96999 * 120.00396 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2012 0.0000 4 6 3.5740 1.2111 -0.0005 5 6 4.2798 0.0051 -0.0016 6 6 5.7555 0.0095 -0.0016 7 8 6.3661 -1.0407 -0.0030 8 8 6.4256 1.1783 -0.0011 9 6 7.8758 1.1067 -0.0017 10 1 8.1951 0.1995 0.5112 11 6 8.3846 1.0827 -1.4445 12 6 8.4385 2.3104 0.7093 13 1 7.7728 3.0545 1.1209 14 6 9.8032 2.4616 0.8344 15 7 10.6139 1.5552 0.3337 16 14 10.5008 3.9532 1.7164 17 1 10.0074 3.9758 3.1170 18 1 11.9839 3.8801 1.7157 19 1 10.0653 5.1895 1.0183 20 6 3.5809 -1.2060 -0.0079 21 9 4.2542 -2.3773 -0.0151 22 6 2.1956 -1.2003 -0.0005 23 9 1.5160 -2.3680 -0.0016 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3632 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6511 2.1338 0.0004 28 1 4.1079 2.1499 -0.0009 29 1 7.9776 0.2121 -1.9588 30 1 8.0654 1.9899 -1.9574 31 1 9.4733 1.0294 -1.4450 32 1 11.5741 1.6614 0.4220 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870205805.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:56 Heat of formation + Delta-G solvation = -158.693604 kcal Electronic energy + Delta-G solvation = -20211.578443 eV Core-core repulsion = 16580.209447 eV Total energy + Delta-G solvation = -3631.368996 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.50159 -48.54580 -39.89437 -38.63067 -35.76016 -33.41888 -32.97000 -30.53502 -29.68081 -27.88283 -25.35498 -23.52763 -22.87750 -21.64130 -20.01795 -18.18594 -17.43323 -17.07997 -16.51276 -16.45146 -16.19496 -15.36614 -15.17424 -14.74865 -14.66634 -14.51827 -14.22165 -13.70053 -13.29864 -13.09997 -12.60037 -12.31839 -12.11490 -11.88868 -11.75529 -11.66961 -11.26209 -11.08872 -10.88254 -10.43462 -10.31423 -9.82691 -9.60715 -9.04254 -8.96309 -8.89449 -8.52251 -6.21270 -4.28957 0.40698 0.79531 2.70306 3.16892 3.24551 3.28864 3.33090 3.57487 3.73618 4.17135 4.28662 4.44531 4.47775 4.74693 4.98930 5.11737 5.16896 5.23429 5.40985 5.71265 5.72768 5.82445 5.95984 6.03766 6.51955 6.59889 6.84993 6.86739 7.06748 7.54012 7.67676 7.86581 8.08349 8.51195 8.80658 9.36384 10.86168 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033633 B = 0.004443 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.309196 B = 6300.848689 C = 6847.829833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.067 4.067 3 C -0.120 4.120 4 C -0.037 4.037 5 C -0.130 4.130 6 C 0.494 3.506 7 O -0.500 6.500 8 O -0.347 6.347 9 C 0.216 3.784 10 H 0.049 0.951 11 C -0.156 4.156 12 C -0.523 4.523 13 H 0.069 0.931 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.913 3.087 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.131 3.869 21 F -0.104 7.104 22 C 0.046 3.954 23 F -0.126 7.126 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.147 0.853 28 H 0.160 0.840 29 H 0.017 0.983 30 H 0.038 0.962 31 H 0.101 0.899 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.664 -0.141 -1.327 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.069 4.069 3 C -0.138 4.138 4 C -0.055 4.055 5 C -0.132 4.132 6 C 0.337 3.663 7 O -0.390 6.390 8 O -0.264 6.264 9 C 0.164 3.836 10 H 0.066 0.934 11 C -0.213 4.213 12 C -0.561 4.561 13 H 0.088 0.912 14 C -0.139 4.139 15 N -0.526 5.526 16 Si 0.740 3.260 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.199 1.199 20 C 0.110 3.890 21 F -0.081 7.081 22 C 0.026 3.974 23 F -0.104 7.104 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.165 0.835 28 H 0.177 0.823 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.119 0.881 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.209 -0.569 -1.348 18.267 hybrid contribution 0.642 0.111 0.383 0.756 sum -17.567 -0.458 -0.965 17.599 Atomic orbital electron populations 1.20820 0.89148 1.03974 1.03433 1.20057 0.97538 0.91023 0.98234 1.20996 0.93750 0.97423 1.01609 1.21585 0.93810 0.97922 0.92219 1.19413 0.92483 0.92498 1.08792 1.20541 0.87392 0.83882 0.74445 1.90850 1.69740 1.33130 1.45249 1.86519 1.27200 1.30909 1.81726 1.20725 0.68473 0.99453 0.94934 0.93364 1.22176 1.04987 0.97732 0.96431 1.20957 0.91681 1.06705 1.36746 0.91250 1.24887 0.96344 0.97149 0.95525 1.69885 1.03850 1.34290 1.44550 0.86309 0.77688 0.81992 0.79993 1.19961 1.21014 1.19901 1.17667 0.88072 0.82071 1.01165 1.91630 1.79778 1.44000 1.92739 1.17232 0.87542 0.82568 1.10081 1.91512 1.79221 1.45398 1.94298 0.90009 0.90722 0.90154 0.83501 0.82272 0.96440 0.94306 0.88104 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.82 36.00 0.35 -0.44 16 2 C -0.07 -0.69 5.89 -104.49 -0.62 -1.30 16 3 C -0.12 -1.15 9.67 -39.65 -0.38 -1.53 16 4 C -0.04 -0.47 9.61 -39.17 -0.38 -0.85 16 5 C -0.13 -2.18 5.88 -104.94 -0.62 -2.80 16 6 C 0.49 10.78 7.87 34.54 0.27 11.05 16 7 O -0.50 -12.45 14.60 -19.25 -0.28 -12.73 16 8 O -0.35 -8.12 9.11 -40.57 -0.37 -8.49 16 9 C 0.22 5.78 2.56 -27.88 -0.07 5.71 16 10 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 11 C -0.16 -3.93 9.33 37.16 0.35 -3.58 16 12 C -0.52 -14.43 8.90 -34.44 -0.31 -14.73 16 13 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -25.07 11.32 55.43 0.63 -24.45 16 16 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 C 0.13 2.14 7.29 -38.88 -0.28 1.86 16 21 F -0.10 -1.95 15.46 2.25 0.03 -1.92 16 22 C 0.05 0.61 7.24 -39.42 -0.29 0.32 16 23 F -0.13 -1.68 16.37 2.25 0.04 -1.64 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.52 7.62 -51.93 -0.40 0.12 16 26 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.16 1.92 7.61 -52.49 -0.40 1.52 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.10 2.72 6.07 -51.93 -0.32 2.40 16 32 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 292.24 15.07 4.40 4.40 Total: -1.00 -31.10 292.24 -5.77 -36.87 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -3.14 Total: -3.10 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -2.06 Total: -4.68 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 0.63 Total: -24.45 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.65 Total: -21.22 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.07 Total: -3.55 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.10 -5.77 -36.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205805.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.828 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds