Wall clock time and date at job start Mon Mar 30 2020 01:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99861 * 2 1 4 4 H 1.48508 * 109.47015 * 269.99552 * 3 2 1 5 5 H 1.48497 * 109.47631 * 29.99968 * 3 2 1 6 6 H 1.48505 * 109.47168 * 150.00120 * 3 2 1 7 7 C 1.37878 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99601 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00226 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47229 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47381 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47325 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99877 * 179.97438 * 12 11 10 14 14 O 1.21547 * 119.99995 * 0.02562 * 13 12 11 15 15 C 1.47856 * 119.99744 * 179.97438 * 13 12 11 16 16 C 1.40123 * 120.95761 * 270.00205 * 15 13 12 17 17 F 1.35099 * 120.52376 * 0.25665 * 16 15 13 18 18 C 1.38435 * 118.95461 * 179.97438 * 16 15 13 19 19 N 1.31765 * 120.93115 * 0.02562 * 18 16 15 20 20 C 1.31773 * 122.14154 * 359.97438 * 19 18 16 21 21 C 1.38431 * 120.92720 * 0.02952 * 20 19 18 22 22 F 1.35103 * 120.51240 * 179.97438 * 21 20 19 23 23 H 0.96996 * 120.00161 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47057 * 60.00257 * 9 7 2 25 25 H 1.08998 * 109.47006 * 300.00159 * 9 7 2 26 26 H 1.09002 * 109.46863 * 60.00173 * 10 9 7 27 27 H 1.09003 * 109.47201 * 300.00508 * 10 9 7 28 28 H 1.08998 * 109.47004 * 59.99430 * 11 10 9 29 29 H 1.09003 * 109.47242 * 300.00328 * 11 10 9 30 30 H 0.96999 * 120.00428 * 0.02562 * 12 11 10 31 31 H 1.07998 * 119.53277 * 179.97438 * 18 16 15 32 32 H 1.07996 * 119.53031 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4804 -4.9871 0.0020 12 7 2.4324 -6.1006 0.0024 13 6 1.9831 -7.3713 0.0034 14 8 0.7881 -7.5934 0.0035 15 6 2.9440 -8.4951 0.0032 16 6 3.4114 -9.0435 -1.1985 17 9 2.9953 -8.5505 -2.3855 18 6 4.3110 -10.0947 -1.1503 19 7 4.7261 -10.5785 0.0029 20 6 4.3127 -10.0935 1.1562 21 6 3.4132 -9.0423 1.2046 22 9 2.9946 -8.5519 2.3919 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5576 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 2.8726 -3.6039 0.8910 27 1 2.8713 -3.6047 -0.8890 28 1 0.8533 -5.0450 -0.8876 29 1 0.8540 -5.0447 0.8922 30 1 3.3860 -5.9234 0.0026 31 1 4.6770 -10.5247 -2.0709 32 1 4.6809 -10.5221 2.0766 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874371113.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:23 Heat of formation + Delta-G solvation = -101.742818 kcal Electronic energy + Delta-G solvation = -19528.820804 eV Core-core repulsion = 15932.214131 eV Total energy + Delta-G solvation = -3596.606673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.57551 -49.54809 -40.67754 -39.37268 -35.62089 -33.57070 -32.97856 -31.29465 -31.17583 -27.20144 -25.36503 -24.08968 -23.10861 -21.12989 -20.54084 -18.70657 -18.63946 -18.16810 -16.92111 -16.44998 -16.40903 -16.14117 -15.85909 -15.59871 -15.27850 -14.56974 -14.46367 -14.22735 -13.87187 -13.72999 -13.70061 -12.65007 -12.34595 -11.94452 -11.82361 -10.94363 -10.93432 -10.78882 -10.63856 -10.40907 -10.07500 -9.94909 -9.51035 -9.49683 -9.17558 -9.05169 -8.40859 -6.05386 -4.08831 0.07840 0.13759 2.19815 2.74862 2.88405 3.08958 3.28666 3.35215 3.37888 3.45244 3.74423 4.13430 4.16390 4.41030 4.42746 4.89163 4.94830 5.17090 5.30511 5.56177 5.65344 5.85771 6.03941 6.20619 6.49113 6.67320 6.90408 7.01762 7.33713 7.58357 7.69924 7.92254 7.95613 8.33325 8.97570 9.55648 11.05896 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032171 B = 0.003345 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.126941 B = 8367.575243 C = 8493.079132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.114 3.886 12 N -0.706 5.706 13 C 0.557 3.443 14 O -0.515 6.515 15 C -0.151 4.151 16 C 0.114 3.886 17 F -0.108 7.108 18 C 0.067 3.933 19 N -0.420 5.420 20 C 0.067 3.933 21 C 0.114 3.886 22 F -0.108 7.108 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.402 0.598 31 H 0.184 0.816 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.525 -20.842 0.010 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.008 4.008 12 N -0.356 5.356 13 C 0.340 3.660 14 O -0.390 6.390 15 C -0.164 4.164 16 C 0.092 3.908 17 F -0.086 7.086 18 C -0.092 4.092 19 N -0.127 5.127 20 C -0.092 4.092 21 C 0.091 3.909 22 F -0.086 7.086 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.236 0.764 31 H 0.200 0.800 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 10.031 -21.489 0.014 23.715 hybrid contribution 0.075 1.941 -0.009 1.942 sum 10.106 -19.549 0.005 22.007 Atomic orbital electron populations 1.69962 1.06073 1.26768 1.50418 1.25030 0.94866 0.99344 0.95201 0.86569 0.79794 0.83356 0.78124 1.20627 1.21174 1.19874 1.21184 0.92997 0.90880 1.51141 0.92616 1.19032 0.93803 0.90754 0.97765 1.21916 0.99875 0.93015 1.01108 1.21824 0.91736 0.84626 1.02582 1.46195 1.11387 1.05215 1.72821 1.17657 0.87565 0.82684 0.78136 1.90861 1.15084 1.84343 1.48747 1.20765 1.01542 1.01391 0.92729 1.18644 0.96427 0.95352 0.80428 1.91629 1.88259 1.86277 1.42476 1.23034 0.94821 0.93211 0.98094 1.67654 1.21651 1.26035 0.97328 1.23035 0.94870 0.93168 0.98090 1.18641 0.96421 0.95365 0.80427 1.91631 1.88173 1.86384 1.42456 0.92871 0.96182 0.96168 0.92524 0.92528 0.91135 0.91147 0.76403 0.79954 0.79953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.11 1.97 5.67 -4.05 -0.02 1.95 16 12 N -0.71 -10.22 5.55 -61.25 -0.34 -10.56 16 13 C 0.56 8.56 6.74 -12.32 -0.08 8.48 16 14 O -0.51 -9.92 17.10 5.32 0.09 -9.83 16 15 C -0.15 -1.79 5.68 -104.55 -0.59 -2.38 16 16 C 0.11 1.15 7.34 -38.80 -0.28 0.86 16 17 F -0.11 -1.22 16.92 2.25 0.04 -1.19 16 18 C 0.07 0.51 11.16 -17.51 -0.20 0.32 16 19 N -0.42 -3.43 10.33 -13.18 -0.14 -3.57 16 20 C 0.07 0.51 11.16 -17.51 -0.20 0.31 16 21 C 0.11 1.15 7.34 -38.81 -0.28 0.86 16 22 F -0.11 -1.22 16.92 2.25 0.04 -1.19 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.40 4.71 8.46 -40.82 -0.35 4.37 16 31 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 300.33 15.07 4.53 4.53 Total: -1.00 -32.70 300.33 -5.69 -38.38 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -3.27 Total: -2.13 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -2.35 Total: -4.86 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.26 Total: -40.02 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.08 Total: -2.37 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.70 -5.69 -38.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874371113.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.361 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds