Wall clock time and date at job start Mon Mar 30 2020 01:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99861 * 2 1 4 4 H 1.48508 * 109.47015 * 269.99552 * 3 2 1 5 5 H 1.48497 * 109.47631 * 29.99968 * 3 2 1 6 6 H 1.48505 * 109.47168 * 150.00120 * 3 2 1 7 7 C 1.37878 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99601 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00226 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47229 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47381 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47325 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99877 * 179.97438 * 12 11 10 14 14 O 1.21547 * 119.99995 * 0.02562 * 13 12 11 15 15 C 1.47856 * 119.99744 * 179.97438 * 13 12 11 16 16 C 1.40123 * 120.95761 * 270.00205 * 15 13 12 17 17 F 1.35099 * 120.52376 * 0.25665 * 16 15 13 18 18 C 1.38435 * 118.95461 * 179.97438 * 16 15 13 19 19 N 1.31765 * 120.93115 * 0.02562 * 18 16 15 20 20 C 1.31773 * 122.14154 * 359.97438 * 19 18 16 21 21 C 1.38431 * 120.92720 * 0.02952 * 20 19 18 22 22 F 1.35103 * 120.51240 * 179.97438 * 21 20 19 23 23 H 0.96996 * 120.00161 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47057 * 60.00257 * 9 7 2 25 25 H 1.08998 * 109.47006 * 300.00159 * 9 7 2 26 26 H 1.09002 * 109.46863 * 60.00173 * 10 9 7 27 27 H 1.09003 * 109.47201 * 300.00508 * 10 9 7 28 28 H 1.08998 * 109.47004 * 59.99430 * 11 10 9 29 29 H 1.09003 * 109.47242 * 300.00328 * 11 10 9 30 30 H 0.96999 * 120.00428 * 0.02562 * 12 11 10 31 31 H 1.07998 * 119.53277 * 179.97438 * 18 16 15 32 32 H 1.07996 * 119.53031 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4804 -4.9871 0.0020 12 7 2.4324 -6.1006 0.0024 13 6 1.9831 -7.3713 0.0034 14 8 0.7881 -7.5934 0.0035 15 6 2.9440 -8.4951 0.0032 16 6 3.4114 -9.0435 -1.1985 17 9 2.9953 -8.5505 -2.3855 18 6 4.3110 -10.0947 -1.1503 19 7 4.7261 -10.5785 0.0029 20 6 4.3127 -10.0935 1.1562 21 6 3.4132 -9.0423 1.2046 22 9 2.9946 -8.5519 2.3919 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5576 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 2.8726 -3.6039 0.8910 27 1 2.8713 -3.6047 -0.8890 28 1 0.8533 -5.0450 -0.8876 29 1 0.8540 -5.0447 0.8922 30 1 3.3860 -5.9234 0.0026 31 1 4.6770 -10.5247 -2.0709 32 1 4.6809 -10.5221 2.0766 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874371113.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:23 Heat of formation + Delta-G solvation = -124.382729 kcal Electronic energy + Delta-G solvation = -19529.802544 eV Core-core repulsion = 15932.214131 eV Total energy + Delta-G solvation = -3597.588414 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.38068 -50.35282 -41.56313 -40.46137 -37.16012 -35.33351 -34.07366 -32.87163 -31.96465 -28.89624 -26.54209 -24.79675 -24.76614 -22.48901 -22.05643 -19.60791 -19.40042 -19.16060 -18.55220 -17.77577 -17.20694 -17.10094 -16.75923 -16.67935 -16.67064 -16.44925 -15.53570 -15.35571 -14.86318 -14.86305 -14.38794 -14.29971 -13.82918 -13.67408 -13.32175 -12.77592 -12.62026 -12.44434 -12.01248 -11.74584 -11.50117 -11.28477 -11.13813 -10.98627 -10.57106 -10.41038 -10.17808 -8.21216 -6.32877 -0.71637 -0.52500 1.01224 1.41204 1.42458 1.53393 1.71517 2.13118 2.32469 2.40931 2.72875 3.09229 3.12790 3.20134 3.42639 3.69333 4.02329 4.11259 4.18182 4.25754 4.45832 4.59429 4.79899 4.85794 5.10435 5.17650 5.21252 5.48311 5.66291 5.81404 6.12042 6.20659 6.36934 6.77132 6.84254 7.36910 8.90923 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032171 B = 0.003345 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.126941 B = 8367.575243 C = 8493.079132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.102 4.102 11 C 0.127 3.873 12 N -0.696 5.696 13 C 0.557 3.443 14 O -0.562 6.562 15 C -0.167 4.167 16 C 0.103 3.897 17 F -0.119 7.119 18 C 0.090 3.910 19 N -0.423 5.423 20 C 0.090 3.910 21 C 0.103 3.897 22 F -0.120 7.120 23 H 0.264 0.736 24 H -0.006 1.006 25 H -0.006 1.006 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.417 0.583 31 H 0.218 0.782 32 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.379 -21.891 0.009 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.140 4.140 11 C 0.003 3.997 12 N -0.346 5.346 13 C 0.341 3.659 14 O -0.441 6.441 15 C -0.180 4.180 16 C 0.080 3.920 17 F -0.098 7.098 18 C -0.068 4.068 19 N -0.130 5.130 20 C -0.068 4.068 21 C 0.080 3.920 22 F -0.098 7.098 23 H 0.072 0.928 24 H 0.012 0.988 25 H 0.012 0.988 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.255 0.745 31 H 0.235 0.765 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 12.939 -22.552 0.012 26.000 hybrid contribution -0.806 2.193 -0.009 2.336 sum 12.133 -20.359 0.003 23.700 Atomic orbital electron populations 1.70108 1.07947 1.27848 1.51598 1.26024 0.95750 1.03576 0.94729 0.85407 0.78685 0.78238 0.78469 1.19806 1.21042 1.18403 1.21667 0.93761 0.91959 1.50600 0.91509 1.18941 0.94402 0.92815 0.95251 1.21616 0.98544 0.91445 1.02375 1.21428 0.91789 0.84970 1.01468 1.45977 1.11752 1.04550 1.72348 1.18163 0.87615 0.83443 0.76630 1.90830 1.17384 1.85126 1.50781 1.20583 1.01991 1.00905 0.94520 1.18820 0.97441 0.96306 0.79397 1.91602 1.88588 1.86609 1.42978 1.23546 0.92711 0.91324 0.99245 1.67823 1.21659 1.25939 0.97576 1.23547 0.92763 0.91279 0.99240 1.18817 0.97431 0.96324 0.79396 1.91603 1.88505 1.86716 1.42960 0.92776 0.98792 0.98775 0.91160 0.91151 0.92392 0.92406 0.74540 0.76548 0.76547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 7 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.10 -3.89 5.27 30.59 0.16 -3.72 16 11 C 0.13 4.48 5.67 86.38 0.49 4.97 16 12 N -0.70 -20.07 5.55 -465.98 -2.59 -22.66 16 13 C 0.56 17.32 6.74 86.79 0.58 17.90 16 14 O -0.56 -22.48 17.10 -3.86 -0.07 -22.54 16 15 C -0.17 -3.82 5.68 -19.82 -0.11 -3.93 16 16 C 0.10 1.91 7.34 22.77 0.17 2.07 16 17 F -0.12 -2.60 16.92 44.97 0.76 -1.84 16 18 C 0.09 1.08 11.16 84.75 0.95 2.03 16 19 N -0.42 -5.40 10.33 -195.62 -2.02 -7.42 16 20 C 0.09 1.08 11.16 84.75 0.95 2.03 16 21 C 0.10 1.90 7.34 22.77 0.17 2.07 16 22 F -0.12 -2.60 16.92 44.97 0.76 -1.84 16 23 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 24 H -0.01 -0.36 8.14 -2.39 -0.02 -0.37 16 25 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 16 26 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.42 9.34 8.46 -92.71 -0.78 8.55 16 31 H 0.22 1.04 8.06 -2.91 -0.02 1.01 16 32 H 0.22 1.04 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -72.36 300.33 3.73 -68.63 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 0.38 Total: 3.47 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 4.19 Total: -4.74 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -4.32 Total: -86.73 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.07 Total: -22.54 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 1.52 Total: -3.68 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -72.36 3.73 -68.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874371113.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.754 kcal (2) G-P(sol) polarization free energy of solvation -72.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds