Wall clock time and date at job start Mon Mar 30 2020 01:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00190 * 2 1 4 4 H 1.48501 * 109.46807 * 239.99611 * 3 2 1 5 5 H 1.48498 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47057 * 119.99502 * 3 2 1 7 7 C 1.37875 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00065 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99923 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27942 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.38259 * 119.99714 * 259.71695 * 15 14 13 17 17 C 1.38216 * 120.06887 * 179.76900 * 16 15 14 18 18 C 1.38255 * 120.07096 * 0.51401 * 17 16 15 19 19 C 1.38368 * 120.00115 * 359.74387 * 18 17 16 20 20 F 1.35098 * 120.04083 * 179.97438 * 19 18 17 21 21 C 1.38365 * 120.00423 * 79.99934 * 15 14 13 22 22 F 1.35104 * 120.03345 * 359.97438 * 21 15 14 23 23 H 0.96997 * 119.99506 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47088 * 59.99370 * 9 7 2 25 25 H 1.09006 * 109.46998 * 299.99569 * 9 7 2 26 26 H 0.97000 * 120.00386 * 0.02562 * 10 9 7 27 27 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 28 28 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 29 29 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 30 30 H 1.07999 * 119.96511 * 0.03180 * 16 15 14 31 31 H 1.07999 * 119.96676 * 180.25637 * 17 16 15 32 32 H 1.07998 * 120.00314 * 179.76502 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5581 -5.1056 0.0011 13 7 2.6294 -5.9079 0.0016 14 6 2.1410 -7.2890 -0.0040 15 6 3.3131 -8.2362 -0.0090 16 6 3.7154 -8.8318 -1.1901 17 6 4.7932 -9.6971 -1.1973 18 6 5.4646 -9.9771 -0.0216 19 6 5.0611 -9.3868 1.1631 20 9 5.7163 -9.6602 2.3125 21 6 3.9829 -8.5144 1.1693 22 9 3.5871 -7.9368 2.3247 23 1 -0.4849 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 3.1566 -3.4356 0.0009 27 1 3.5831 -5.7306 0.0012 28 1 1.5361 -7.4641 0.8857 29 1 1.5347 -7.4565 -0.8942 30 1 3.1897 -8.6174 -2.1088 31 1 5.1087 -10.1582 -2.1215 32 1 6.3043 -10.6563 -0.0277 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875541204.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:59 Heat of formation + Delta-G solvation = -124.413245 kcal Electronic energy + Delta-G solvation = -19495.106639 eV Core-core repulsion = 15897.516902 eV Total energy + Delta-G solvation = -3597.589737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.54770 -49.63591 -41.01623 -39.94645 -36.41770 -35.80821 -34.36325 -32.39193 -31.32918 -29.35666 -27.18283 -24.60177 -23.85064 -22.93590 -21.92902 -19.95758 -18.97313 -18.34077 -18.23449 -17.78965 -17.48949 -17.19024 -16.52408 -16.45077 -16.03836 -15.78508 -15.53744 -15.32193 -14.97321 -14.69761 -14.23405 -14.01589 -13.93655 -13.47222 -13.11944 -12.91347 -12.88530 -12.66682 -12.23140 -12.22328 -11.49560 -11.35208 -10.79015 -10.34825 -10.06958 -9.78301 -9.62348 -8.27596 -6.44215 -0.17273 -0.09491 1.43981 1.48591 1.56551 1.84837 2.21022 2.37448 2.46410 2.72082 3.07237 3.22570 3.41981 3.55357 3.71298 3.87507 4.16725 4.31447 4.54524 4.73779 4.85660 4.98110 5.07765 5.15905 5.25657 5.27777 5.40203 5.48687 5.65622 5.72900 5.85214 6.20306 6.67020 7.23415 7.27509 7.68178 8.84617 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031747 B = 0.003379 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.774703 B = 8285.129755 C = 8508.510988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.285 3.715 10 N -0.722 5.722 11 C 0.694 3.306 12 O -0.646 6.646 13 N -0.730 5.730 14 C 0.182 3.818 15 C -0.117 4.117 16 C -0.072 4.072 17 C -0.084 4.084 18 C -0.108 4.108 19 C 0.044 3.956 20 F -0.142 7.142 21 C 0.057 3.943 22 F -0.145 7.145 23 H 0.269 0.731 24 H -0.011 1.011 25 H -0.016 1.016 26 H 0.404 0.596 27 H 0.408 0.592 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.166 0.834 31 H 0.184 0.816 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.261 -21.605 -4.028 26.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.376 5.376 11 C 0.393 3.607 12 O -0.529 6.529 13 N -0.387 5.387 14 C 0.058 3.942 15 C -0.118 4.118 16 C -0.090 4.090 17 C -0.102 4.102 18 C -0.126 4.126 19 C 0.024 3.976 20 F -0.121 7.121 21 C 0.037 3.963 22 F -0.123 7.123 23 H 0.078 0.922 24 H 0.007 0.993 25 H 0.002 0.998 26 H 0.239 0.761 27 H 0.244 0.756 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.184 0.816 31 H 0.202 0.798 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 14.008 -21.664 -3.925 26.095 hybrid contribution 0.545 1.171 0.984 1.624 sum 14.553 -20.493 -2.941 25.306 Atomic orbital electron populations 1.70139 1.08265 1.28657 1.49861 1.26067 0.95791 1.03858 0.93827 0.85184 0.77882 0.76525 0.79464 1.18518 1.21026 1.18846 1.21576 0.94304 0.90510 1.53082 0.89884 1.18428 0.88083 0.83237 0.94065 1.45307 1.10937 1.03783 1.77560 1.16251 0.85009 0.81517 0.77892 1.90845 1.16531 1.84901 1.60577 1.44907 1.09017 1.04144 1.80667 1.19894 0.93209 0.77859 1.03207 1.19775 0.98299 1.01103 0.92651 1.21484 0.96382 0.94364 0.96797 1.21571 0.93439 0.96142 0.99019 1.21569 1.01769 0.99718 0.89572 1.18011 0.94139 1.01187 0.84274 1.91504 1.79730 1.92599 1.48255 1.17968 0.97326 0.98260 0.82781 1.91512 1.90181 1.83054 1.47576 0.92204 0.99288 0.99772 0.76054 0.75636 0.92606 0.89136 0.81613 0.79842 0.80745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.99 42.65 29.54 68.60 2.03 44.68 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.56 -30.80 9.28 25.60 0.24 -30.56 16 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.29 16.10 5.43 85.63 0.46 16.56 16 10 N -0.72 -32.00 5.55 -482.28 -2.68 -34.68 16 11 C 0.69 29.70 8.57 179.05 1.53 31.24 16 12 O -0.65 -33.94 16.34 -4.01 -0.07 -34.00 16 13 N -0.73 -22.12 5.55 -482.30 -2.68 -24.80 16 14 C 0.18 4.72 5.52 85.63 0.47 5.19 16 15 C -0.12 -2.22 5.25 -19.83 -0.10 -2.32 16 16 C -0.07 -0.80 9.67 22.27 0.22 -0.59 16 17 C -0.08 -0.57 10.04 22.27 0.22 -0.35 16 18 C -0.11 -1.09 10.02 22.30 0.22 -0.86 16 19 C 0.04 0.81 7.31 22.41 0.16 0.98 16 20 F -0.14 -3.13 17.18 44.97 0.77 -2.36 16 21 C 0.06 1.28 7.25 22.41 0.16 1.44 16 22 F -0.14 -4.17 16.58 44.97 0.75 -3.43 16 23 H 0.27 15.32 8.31 -92.71 -0.77 14.54 16 24 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 25 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 26 H 0.40 14.84 8.34 -92.71 -0.77 14.07 16 27 H 0.41 9.94 8.48 -92.71 -0.79 9.15 16 28 H 0.06 1.70 7.95 -2.38 -0.02 1.68 16 29 H 0.09 2.21 8.00 -2.39 -0.02 2.19 16 30 H 0.17 1.18 8.03 -2.91 -0.02 1.16 16 31 H 0.18 -0.14 8.06 -2.91 -0.02 -0.16 16 32 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -77.50 298.25 2.09 -75.42 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -0.38 Total: 14.22 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: 4.06 Total: 21.43 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -5.07 Total: -115.95 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.07 Total: -34.00 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 1.52 Total: -5.79 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -77.50 2.09 -75.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875541204.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.996 kcal (2) G-P(sol) polarization free energy of solvation -77.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds