Wall clock time and date at job start Mon Mar 30 2020 01:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 119.99817 * 2 1 4 4 H 1.48500 * 109.47195 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47219 * 120.00383 * 3 2 1 6 6 H 1.48498 * 109.47189 * 240.00023 * 3 2 1 7 7 C 1.40026 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99830 * 1.91300 * 7 2 1 9 9 C 1.41340 * 120.00328 * 181.90808 * 7 2 1 10 10 C 1.40610 * 119.78639 * 187.00807 * 9 7 2 11 11 C 1.38312 * 119.12887 * 179.76936 * 10 9 7 12 12 C 1.38693 * 118.66431 * 0.49611 * 11 10 9 13 13 C 1.39633 * 119.49900 * 359.73988 * 12 11 10 14 14 N 1.39270 * 119.57529 * 180.02562 * 13 12 11 15 15 C 1.34770 * 119.99841 * 18.87791 * 14 13 12 16 16 O 1.21268 * 120.00470 * 5.60418 * 15 14 13 17 17 C 1.50708 * 120.00128 * 185.60362 * 15 14 13 18 18 C 1.53001 * 109.47504 * 180.02562 * 17 15 14 19 19 C 1.52990 * 109.47184 * 180.02562 * 18 17 15 20 20 F 1.39898 * 109.47430 * 64.99655 * 19 18 17 21 21 F 1.39899 * 109.47004 * 184.99999 * 19 18 17 22 22 N 1.31925 * 120.85133 * 0.02562 * 13 12 11 23 23 H 0.96995 * 119.99437 * 174.83540 * 1 2 3 24 24 H 1.07998 * 120.43955 * 0.02562 * 10 9 7 25 25 H 1.07997 * 120.66764 * 180.21715 * 11 10 9 26 26 H 1.08000 * 120.25337 * 179.76932 * 12 11 10 27 27 H 0.97003 * 120.00125 * 198.87779 * 14 13 12 28 28 H 1.08999 * 109.46789 * 300.00085 * 17 15 14 29 29 H 1.09001 * 109.47041 * 59.99617 * 17 15 14 30 30 H 1.09002 * 109.46419 * 300.00243 * 18 17 15 31 31 H 1.09001 * 109.46959 * 59.99650 * 18 17 15 32 32 H 1.09003 * 109.47526 * 304.99717 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7465 0.0006 5 1 3.0952 1.6965 1.2125 6 1 3.0951 1.6965 -1.2125 7 6 2.0077 -1.2126 0.0005 8 1 1.4681 -2.1478 -0.0303 9 6 3.4205 -1.2129 0.0413 10 6 4.1233 -2.4217 -0.1070 11 6 5.5058 -2.4056 -0.0697 12 6 6.1521 -1.1938 0.1238 13 6 5.3977 -0.0279 0.2697 14 7 6.0450 1.1899 0.4636 15 6 7.3463 1.3206 0.1383 16 8 7.9270 0.4119 -0.4163 17 6 8.0800 2.5962 0.4639 18 6 9.5310 2.4848 -0.0084 19 6 10.2759 3.7794 0.3226 20 9 10.3494 3.9332 1.7112 21 9 11.5686 3.7227 -0.2094 22 7 4.0797 -0.0650 0.2262 23 1 -0.4849 -0.8366 -0.0756 24 1 3.5908 -3.3500 -0.2523 25 1 6.0706 -3.3189 -0.1845 26 1 7.2306 -1.1521 0.1609 27 1 5.5592 1.9441 0.8327 28 1 7.5969 3.4323 -0.0417 29 1 8.0598 2.7622 1.5410 30 1 10.0142 1.6485 0.4968 31 1 9.5508 2.3190 -1.0856 32 1 9.7423 4.6263 -0.1089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:43 Heat of formation + Delta-G solvation = -124.366768 kcal Electronic energy + Delta-G solvation = -19889.952485 eV Core-core repulsion = 16292.364764 eV Total energy + Delta-G solvation = -3597.587722 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.18213 -47.19395 -40.29007 -38.29375 -34.75896 -34.03457 -33.52635 -31.17968 -29.79013 -27.32419 -25.36304 -23.20501 -21.92589 -21.56440 -19.94134 -18.46743 -17.91071 -17.72916 -17.03554 -16.92478 -15.88259 -15.76936 -15.13929 -14.60127 -14.18782 -14.06759 -13.88352 -13.59057 -13.53348 -13.01377 -12.87789 -12.55938 -12.41536 -12.23066 -11.91192 -11.55061 -11.26528 -11.12420 -10.85879 -10.43114 -10.08273 -9.71090 -9.36675 -9.20706 -8.61963 -7.87354 -7.46917 -7.30231 -4.83684 2.10167 2.58058 2.94265 3.03983 3.48030 3.58372 3.65908 3.91697 4.00402 4.17661 4.32028 4.33045 4.58238 4.71639 4.85988 5.01718 5.20636 5.46777 5.55199 5.72941 5.79399 6.01411 6.38425 6.45928 6.48360 7.05533 7.11637 7.38497 7.49390 7.53036 7.69853 8.04595 8.19883 8.35329 8.59212 9.33373 9.94924 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028849 B = 0.004502 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.328233 B = 6217.691975 C = 7005.542160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.042 3.958 3 Si 1.158 2.842 4 H -0.332 1.332 5 H -0.285 1.285 6 H -0.294 1.294 7 C -0.476 4.476 8 H 0.084 0.916 9 C 0.273 3.727 10 C -0.275 4.275 11 C -0.035 4.035 12 C -0.312 4.312 13 C 0.385 3.615 14 N -0.655 5.655 15 C 0.517 3.483 16 O -0.513 6.513 17 C -0.141 4.141 18 C -0.156 4.156 19 C 0.262 3.738 20 F -0.207 7.207 21 F -0.206 7.206 22 N -0.599 5.599 23 H 0.284 0.716 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.139 0.861 27 H 0.409 0.591 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.316 8.234 1.080 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.179 4.179 3 Si 0.994 3.006 4 H -0.266 1.266 5 H -0.213 1.213 6 H -0.223 1.223 7 C -0.508 4.508 8 H 0.102 0.898 9 C 0.149 3.851 10 C -0.297 4.297 11 C -0.059 4.059 12 C -0.336 4.336 13 C 0.155 3.845 14 N -0.300 5.300 15 C 0.303 3.697 16 O -0.388 6.388 17 C -0.181 4.181 18 C -0.195 4.195 19 C 0.208 3.792 20 F -0.188 7.188 21 F -0.188 7.188 22 N -0.325 5.325 23 H 0.095 0.905 24 H 0.124 0.876 25 H 0.125 0.875 26 H 0.156 0.844 27 H 0.245 0.755 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.017 9.855 0.876 17.157 hybrid contribution 0.243 -2.337 0.081 2.351 sum 14.260 7.518 0.956 16.149 Atomic orbital electron populations 1.70640 1.08161 1.32855 1.31057 1.27787 0.95341 1.06184 0.88554 0.81778 0.70576 0.69608 0.78633 1.26561 1.21287 1.22252 1.20746 0.90102 0.96355 1.43574 0.89804 1.18270 0.93465 0.85931 0.87415 1.21620 0.93888 0.98512 1.15729 1.20938 0.94106 0.96432 0.94420 1.21510 1.00892 0.91248 1.19975 1.18096 0.88738 0.84019 0.93673 1.43310 1.10825 1.13444 1.62376 1.20392 0.81443 0.89392 0.78458 1.90650 1.67074 1.41031 1.40052 1.21579 0.94921 0.96952 1.04627 1.22415 0.94651 0.96898 1.05515 1.21948 0.80736 1.01018 0.75452 1.92992 1.96574 1.97002 1.32238 1.92991 1.41977 1.97765 1.86026 1.65923 1.06727 1.29653 1.30161 0.90521 0.87605 0.87535 0.84371 0.75547 0.87835 0.87507 0.88419 0.87692 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.67 13.65 55.55 0.76 -20.92 16 2 C 0.04 1.14 5.52 -17.35 -0.10 1.04 16 3 Si 1.16 27.40 25.53 -169.99 -4.34 23.06 16 4 H -0.33 -7.76 7.11 56.52 0.40 -7.36 16 5 H -0.28 -6.42 6.70 56.52 0.38 -6.05 16 6 H -0.29 -7.04 7.10 56.52 0.40 -6.64 16 7 C -0.48 -12.84 9.58 -37.73 -0.36 -13.20 16 8 H 0.08 2.25 8.05 -52.48 -0.42 1.83 16 9 C 0.27 7.10 6.39 -85.00 -0.54 6.56 16 10 C -0.28 -6.49 9.83 -38.66 -0.38 -6.88 16 11 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 12 C -0.31 -6.87 8.83 -38.89 -0.34 -7.21 16 13 C 0.39 8.60 7.51 -154.97 -1.16 7.44 16 14 N -0.65 -11.35 5.41 -11.40 -0.06 -11.41 16 15 C 0.52 7.68 7.67 -10.98 -0.08 7.60 16 16 O -0.51 -9.30 12.78 5.57 0.07 -9.23 16 17 C -0.14 -1.27 5.62 -27.88 -0.16 -1.42 16 18 C -0.16 -1.38 4.73 -26.74 -0.13 -1.51 16 19 C 0.26 2.02 5.29 37.15 0.20 2.22 16 20 F -0.21 -1.99 17.02 2.25 0.04 -1.95 16 21 F -0.21 -2.06 17.34 2.25 0.04 -2.02 16 22 N -0.60 -14.90 4.58 -10.26 -0.05 -14.94 16 23 H 0.28 7.30 8.72 -40.82 -0.36 6.94 16 24 H 0.11 2.33 8.06 -52.49 -0.42 1.90 16 25 H 0.11 1.96 8.06 -52.49 -0.42 1.53 16 26 H 0.14 2.95 5.33 -52.50 -0.28 2.67 16 27 H 0.41 6.07 8.83 -40.82 -0.36 5.71 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.11 0.81 7.94 -51.93 -0.41 0.40 16 30 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.10 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 285.81 15.07 4.31 4.31 Total: -1.00 -31.40 285.81 -5.88 -37.28 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.18 Total: 2.34 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -3.46 Total: -6.52 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.65 Total: -47.27 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.07 Total: -9.23 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.08 Total: -3.97 kcal Atomic # 14 Polarization: 27.40 SS G_CDS: -4.34 Total: 23.06 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.40 -5.88 -37.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.086 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds