Wall clock time and date at job start Mon Mar 30 2020 01:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 119.99817 * 2 1 4 4 H 1.48500 * 109.47195 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47219 * 120.00383 * 3 2 1 6 6 H 1.48498 * 109.47189 * 240.00023 * 3 2 1 7 7 C 1.40026 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99830 * 1.91300 * 7 2 1 9 9 C 1.41340 * 120.00328 * 181.90808 * 7 2 1 10 10 C 1.40610 * 119.78639 * 187.00807 * 9 7 2 11 11 C 1.38312 * 119.12887 * 179.76936 * 10 9 7 12 12 C 1.38693 * 118.66431 * 0.49611 * 11 10 9 13 13 C 1.39633 * 119.49900 * 359.73988 * 12 11 10 14 14 N 1.39270 * 119.57529 * 180.02562 * 13 12 11 15 15 C 1.34770 * 119.99841 * 18.87791 * 14 13 12 16 16 O 1.21268 * 120.00470 * 5.60418 * 15 14 13 17 17 C 1.50708 * 120.00128 * 185.60362 * 15 14 13 18 18 C 1.53001 * 109.47504 * 180.02562 * 17 15 14 19 19 C 1.52990 * 109.47184 * 180.02562 * 18 17 15 20 20 F 1.39898 * 109.47430 * 64.99655 * 19 18 17 21 21 F 1.39899 * 109.47004 * 184.99999 * 19 18 17 22 22 N 1.31925 * 120.85133 * 0.02562 * 13 12 11 23 23 H 0.96995 * 119.99437 * 174.83540 * 1 2 3 24 24 H 1.07998 * 120.43955 * 0.02562 * 10 9 7 25 25 H 1.07997 * 120.66764 * 180.21715 * 11 10 9 26 26 H 1.08000 * 120.25337 * 179.76932 * 12 11 10 27 27 H 0.97003 * 120.00125 * 198.87779 * 14 13 12 28 28 H 1.08999 * 109.46789 * 300.00085 * 17 15 14 29 29 H 1.09001 * 109.47041 * 59.99617 * 17 15 14 30 30 H 1.09002 * 109.46419 * 300.00243 * 18 17 15 31 31 H 1.09001 * 109.46959 * 59.99650 * 18 17 15 32 32 H 1.09003 * 109.47526 * 304.99717 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7465 0.0006 5 1 3.0952 1.6965 1.2125 6 1 3.0951 1.6965 -1.2125 7 6 2.0077 -1.2126 0.0005 8 1 1.4681 -2.1478 -0.0303 9 6 3.4205 -1.2129 0.0413 10 6 4.1233 -2.4217 -0.1070 11 6 5.5058 -2.4056 -0.0697 12 6 6.1521 -1.1938 0.1238 13 6 5.3977 -0.0279 0.2697 14 7 6.0450 1.1899 0.4636 15 6 7.3463 1.3206 0.1383 16 8 7.9270 0.4119 -0.4163 17 6 8.0800 2.5962 0.4639 18 6 9.5310 2.4848 -0.0084 19 6 10.2759 3.7794 0.3226 20 9 10.3494 3.9332 1.7112 21 9 11.5686 3.7227 -0.2094 22 7 4.0797 -0.0650 0.2262 23 1 -0.4849 -0.8366 -0.0756 24 1 3.5908 -3.3500 -0.2523 25 1 6.0706 -3.3189 -0.1845 26 1 7.2306 -1.1521 0.1609 27 1 5.5592 1.9441 0.8327 28 1 7.5969 3.4323 -0.0417 29 1 8.0598 2.7622 1.5410 30 1 10.0142 1.6485 0.4968 31 1 9.5508 2.3190 -1.0856 32 1 9.7423 4.6263 -0.1089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:43 Heat of formation + Delta-G solvation = -143.967111 kcal Electronic energy + Delta-G solvation = -19890.802420 eV Core-core repulsion = 16292.364764 eV Total energy + Delta-G solvation = -3598.437656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.83511 -47.86442 -41.71221 -39.94793 -36.33788 -35.38143 -34.82705 -33.01199 -31.47455 -28.31004 -27.16423 -24.35801 -23.64141 -22.73299 -21.37792 -20.31124 -19.01942 -18.46951 -18.25209 -17.87979 -17.03176 -16.87684 -16.77515 -16.22736 -15.56678 -15.40991 -15.07815 -14.81912 -14.54313 -14.30145 -14.24976 -14.19466 -13.73222 -13.41161 -13.08805 -12.93048 -12.68470 -12.24447 -12.21884 -11.77553 -11.75212 -11.62505 -11.12872 -10.76953 -10.42609 -9.76734 -9.28650 -9.22500 -6.84293 0.48800 0.71464 1.55360 1.56027 1.71666 1.83978 2.08158 2.45018 2.66807 2.95966 3.37785 3.51277 3.53534 3.68231 3.84049 4.07055 4.26491 4.31893 4.41948 4.55380 4.65235 4.67718 4.78266 4.88991 5.06879 5.33936 5.36753 5.41878 5.70224 5.79638 5.92226 6.28759 6.40241 6.63431 7.04936 7.47726 7.93844 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028849 B = 0.004502 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.328233 B = 6217.691975 C = 7005.542160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.013 3.987 3 Si 1.190 2.810 4 H -0.329 1.329 5 H -0.269 1.269 6 H -0.299 1.299 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.259 3.741 10 C -0.294 4.294 11 C -0.028 4.028 12 C -0.310 4.310 13 C 0.376 3.624 14 N -0.654 5.654 15 C 0.516 3.484 16 O -0.547 6.547 17 C -0.127 4.127 18 C -0.155 4.155 19 C 0.263 3.737 20 F -0.218 7.218 21 F -0.221 7.221 22 N -0.611 5.611 23 H 0.280 0.720 24 H 0.113 0.887 25 H 0.143 0.857 26 H 0.150 0.850 27 H 0.422 0.578 28 H 0.144 0.856 29 H 0.129 0.871 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.589 10.014 1.319 19.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.204 4.204 3 Si 1.022 2.978 4 H -0.262 1.262 5 H -0.196 1.196 6 H -0.228 1.228 7 C -0.542 4.542 8 H 0.085 0.915 9 C 0.133 3.867 10 C -0.316 4.316 11 C -0.052 4.052 12 C -0.334 4.334 13 C 0.145 3.855 14 N -0.300 5.300 15 C 0.306 3.694 16 O -0.424 6.424 17 C -0.167 4.167 18 C -0.193 4.193 19 C 0.210 3.790 20 F -0.199 7.199 21 F -0.203 7.203 22 N -0.337 5.337 23 H 0.091 0.909 24 H 0.131 0.869 25 H 0.160 0.840 26 H 0.167 0.833 27 H 0.260 0.740 28 H 0.162 0.838 29 H 0.147 0.853 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 16.313 11.652 1.134 20.079 hybrid contribution -0.219 -2.971 -0.012 2.979 sum 16.095 8.680 1.122 18.321 Atomic orbital electron populations 1.70668 1.08502 1.32683 1.33432 1.28657 0.95597 1.08126 0.87978 0.81396 0.69958 0.67521 0.78887 1.26212 1.19599 1.22762 1.20743 0.91065 0.95997 1.46436 0.91495 1.18435 0.93398 0.87356 0.87470 1.21769 0.94958 0.98200 1.16698 1.21344 0.93473 0.97911 0.92493 1.21889 1.01569 0.91469 1.18445 1.18504 0.88169 0.86276 0.92594 1.43462 1.11726 1.12222 1.62636 1.21498 0.80313 0.90865 0.76757 1.90621 1.67410 1.42899 1.41443 1.21644 0.94082 0.94500 1.06436 1.22371 0.94609 0.97150 1.05199 1.22267 0.80102 1.01779 0.74869 1.92973 1.96581 1.97032 1.33348 1.92964 1.43258 1.97849 1.86209 1.65938 1.08011 1.29343 1.30418 0.90899 0.86863 0.83965 0.83274 0.74023 0.83847 0.85329 0.90386 0.87858 0.82636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.84 13.65 21.84 0.30 -45.54 16 2 C 0.01 0.69 5.52 85.29 0.47 1.16 16 3 Si 1.19 55.03 25.53 68.60 1.75 56.78 16 4 H -0.33 -14.83 7.11 99.48 0.71 -14.13 16 5 H -0.27 -11.55 6.70 99.48 0.67 -10.88 16 6 H -0.30 -13.91 7.10 99.48 0.71 -13.20 16 7 C -0.51 -28.33 9.58 23.47 0.22 -28.10 16 8 H 0.07 3.79 8.05 -2.91 -0.02 3.77 16 9 C 0.26 13.48 6.39 40.21 0.26 13.74 16 10 C -0.29 -13.74 9.83 22.87 0.22 -13.52 16 11 C -0.03 -1.16 10.15 22.40 0.23 -0.93 16 12 C -0.31 -12.97 8.83 22.72 0.20 -12.77 16 13 C 0.38 16.05 7.51 133.23 1.00 17.05 16 14 N -0.65 -20.75 5.41 -308.39 -1.67 -22.42 16 15 C 0.52 13.70 7.67 87.66 0.67 14.37 16 16 O -0.55 -18.54 12.78 -2.99 -0.04 -18.58 16 17 C -0.13 -1.73 5.62 29.85 0.17 -1.56 16 18 C -0.15 -2.24 4.73 30.59 0.14 -2.09 16 19 C 0.26 3.09 5.29 71.98 0.38 3.48 16 20 F -0.22 -3.49 17.02 44.97 0.77 -2.72 16 21 F -0.22 -3.88 17.34 44.97 0.78 -3.10 16 22 N -0.61 -29.74 4.58 -186.37 -0.85 -30.59 16 23 H 0.28 15.04 8.72 -92.71 -0.81 14.23 16 24 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 25 H 0.14 4.77 8.06 -2.91 -0.02 4.74 16 26 H 0.15 6.00 5.33 -3.15 -0.02 5.98 16 27 H 0.42 11.06 8.83 -92.71 -0.82 10.24 16 28 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.13 1.32 7.94 -2.39 -0.02 1.30 16 30 H 0.08 1.44 8.10 -2.39 -0.02 1.42 16 31 H 0.10 1.56 8.10 -2.39 -0.02 1.54 16 32 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -69.23 285.81 5.27 -63.95 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.27 Total: 11.41 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 3.97 Total: -9.19 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -2.23 Total: -98.55 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.04 Total: -18.58 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 1.54 Total: -5.83 kcal Atomic # 14 Polarization: 55.03 SS G_CDS: 1.75 Total: 56.78 kcal Total: -69.23 5.27 -63.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.015 kcal (2) G-P(sol) polarization free energy of solvation -69.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds