Wall clock time and date at job start Mon Mar 30 2020 01:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00046 * 2 1 4 4 H 1.48498 * 109.47075 * 269.99882 * 3 2 1 5 5 H 1.48507 * 109.46896 * 29.99595 * 3 2 1 6 6 H 1.48495 * 109.47009 * 149.99347 * 3 2 1 7 7 C 1.37878 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99622 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99941 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47096 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47291 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99502 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00165 * 180.02562 * 11 10 9 14 14 N 1.40101 * 120.00054 * 180.02562 * 13 11 10 15 15 C 1.39812 * 120.00067 * 179.97438 * 14 13 11 16 16 C 1.38900 * 120.03512 * 359.97438 * 15 14 13 17 17 C 1.38137 * 119.98990 * 179.97438 * 16 15 14 18 18 C 1.38419 * 120.07304 * 0.02562 * 17 16 15 19 19 F 1.35100 * 119.95960 * 180.27737 * 18 17 16 20 20 C 1.38665 * 120.08031 * 0.02562 * 18 17 16 21 21 F 1.35099 * 119.99773 * 179.97438 * 20 18 17 22 22 C 1.38324 * 120.00273 * 359.97438 * 20 18 17 23 23 H 0.97000 * 120.00209 * 0.02562 * 1 2 3 24 24 H 1.09010 * 109.47336 * 60.00577 * 9 7 2 25 25 H 1.08998 * 109.47425 * 300.00467 * 9 7 2 26 26 H 1.08996 * 109.46923 * 60.00491 * 10 9 7 27 27 H 1.08992 * 109.47095 * 300.00119 * 10 9 7 28 28 H 0.96993 * 119.99541 * 359.97438 * 13 11 10 29 29 H 0.97003 * 119.99823 * 359.97438 * 14 13 11 30 30 H 1.07994 * 120.00246 * 0.02562 * 16 15 14 31 31 H 1.07994 * 119.96099 * 180.02562 * 17 16 15 32 32 H 1.08002 * 120.03233 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5285 -2.6365 0.0009 12 8 6.1349 -1.5861 0.0015 13 7 6.2024 -3.8037 0.0003 14 7 7.6034 -3.8037 0.0008 15 6 8.3025 -5.0145 0.0007 16 6 7.6088 -6.2178 0.0006 17 6 8.3004 -7.4136 0.0000 18 6 9.6846 -7.4142 -0.0001 19 9 10.3588 -8.5850 -0.0064 20 6 10.3802 -6.2147 0.0011 21 9 11.7312 -6.2172 0.0015 22 6 9.6909 -5.0154 0.0017 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8912 25 1 3.8752 -0.6803 -0.8888 26 1 3.6586 -3.1501 -0.8893 27 1 3.6578 -3.1505 0.8906 28 1 5.7174 -4.6437 0.0003 29 1 8.0884 -2.9636 0.0012 30 1 6.5288 -6.2186 0.0002 31 1 7.7606 -8.3489 -0.0005 32 1 10.2321 -4.0808 0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885113451.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:55 Heat of formation + Delta-G solvation = -69.312225 kcal Electronic energy + Delta-G solvation = -19121.179121 eV Core-core repulsion = 15525.978743 eV Total energy + Delta-G solvation = -3595.200377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.64257 -48.69003 -40.20171 -39.02454 -35.90789 -33.66635 -32.40013 -31.38583 -30.85445 -28.36137 -26.03044 -23.89446 -22.64163 -21.61060 -20.28519 -18.76890 -18.03519 -17.76970 -17.25673 -16.50508 -16.50059 -16.36926 -15.45197 -15.28467 -15.12579 -14.72970 -14.30930 -14.16862 -13.81428 -13.75725 -13.27789 -12.86185 -12.76947 -12.66595 -11.64181 -11.56927 -11.43486 -11.07418 -10.35498 -10.21116 -9.93604 -9.65273 -9.60741 -9.30920 -9.28369 -8.60206 -7.55391 -6.12034 -4.12139 0.63574 0.80148 1.72845 2.73617 3.11316 3.30939 3.38308 3.47149 3.57312 3.98599 4.10527 4.23972 4.42163 4.51948 4.75705 4.95474 5.22524 5.23134 5.43988 5.49578 5.61607 5.71003 5.82037 5.86343 6.27155 6.43108 6.64624 7.12198 7.22455 7.27205 7.48344 7.66764 8.32055 8.42389 8.89829 9.50087 11.00522 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.051960 B = 0.002963 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.747897 B = 9447.326440 C = 9965.626027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.111 4.111 11 C 0.511 3.489 12 O -0.536 6.536 13 N -0.536 5.536 14 N -0.533 5.533 15 C 0.246 3.754 16 C -0.186 4.186 17 C -0.065 4.065 18 C -0.002 4.002 19 F -0.136 7.136 20 C 0.127 3.873 21 F -0.127 7.127 22 C -0.208 4.208 23 H 0.265 0.735 24 H 0.025 0.975 25 H 0.021 0.979 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.421 0.579 29 H 0.436 0.564 30 H 0.136 0.864 31 H 0.148 0.852 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.788 -14.936 0.034 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.152 4.152 11 C 0.300 3.700 12 O -0.409 6.409 13 N -0.286 5.286 14 N -0.255 5.255 15 C 0.138 3.862 16 C -0.210 4.210 17 C -0.085 4.085 18 C -0.024 4.024 19 F -0.115 7.115 20 C 0.106 3.894 21 F -0.105 7.105 22 C -0.233 4.233 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.263 0.737 29 H 0.280 0.720 30 H 0.154 0.846 31 H 0.165 0.835 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 17.899 -14.019 0.037 22.736 hybrid contribution 0.718 0.585 -0.028 0.927 sum 18.617 -13.434 0.009 22.958 Atomic orbital electron populations 1.69899 1.06302 1.27127 1.50568 1.24962 0.94714 0.99246 0.94195 0.86800 0.80570 0.83408 0.78783 1.20190 1.21351 1.18584 1.21045 0.88976 0.94700 1.51937 0.90763 1.19402 0.96666 0.89562 0.97939 1.21696 0.85317 1.04081 1.04101 1.22061 0.91540 0.81590 0.74780 1.90693 1.70241 1.30962 1.49034 1.45482 0.93648 1.10881 1.78581 1.43463 0.94707 1.06547 1.80821 1.17417 0.89935 0.85442 0.93381 1.20387 1.00303 0.89985 1.10314 1.20770 0.91089 0.99452 0.97168 1.17365 0.90472 0.80305 1.14282 1.91496 1.80171 1.44992 1.94834 1.17197 0.77097 0.92739 1.02412 1.91533 1.28100 1.97263 1.93647 1.20160 0.92130 0.97737 1.13296 0.92575 0.95617 0.96070 0.88856 0.88821 0.73679 0.71992 0.84618 0.83471 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.53 -14.31 9.66 -34.44 -0.33 -14.64 16 8 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 9 C 0.00 0.06 3.33 -27.88 -0.09 -0.04 16 10 C -0.11 -1.86 5.64 -27.88 -0.16 -2.02 16 11 C 0.51 8.05 7.95 -10.98 -0.09 7.96 16 12 O -0.54 -10.54 15.82 5.55 0.09 -10.45 16 13 N -0.54 -6.09 6.22 31.22 0.19 -5.89 16 14 N -0.53 -5.68 6.46 32.42 0.21 -5.47 16 15 C 0.25 2.25 6.72 -83.75 -0.56 1.69 16 16 C -0.19 -1.46 9.48 -39.37 -0.37 -1.83 16 17 C -0.07 -0.50 10.02 -39.55 -0.40 -0.90 16 18 C 0.00 -0.02 7.30 -39.36 -0.29 -0.31 16 19 F -0.14 -1.49 17.18 2.25 0.04 -1.46 16 20 C 0.13 1.27 7.30 -39.39 -0.29 0.98 16 21 F -0.13 -1.40 17.18 2.25 0.04 -1.36 16 22 C -0.21 -1.87 9.87 -39.33 -0.39 -2.26 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.03 0.62 7.16 -51.92 -0.37 0.25 16 25 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 26 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.42 3.43 6.60 -182.60 -1.21 2.23 16 29 H 0.44 4.80 8.01 -182.59 -1.46 3.34 16 30 H 0.14 0.79 6.20 -52.49 -0.33 0.46 16 31 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 291.96 15.07 4.40 4.40 Total: -1.00 -32.68 291.96 -7.02 -39.70 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.03 Total: -0.82 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -3.06 Total: -9.44 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 1.18 Total: -37.61 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.82 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.68 -7.02 -39.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885113451.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.612 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds