Wall clock time and date at job start Mon Mar 30 2020 01:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00046 * 2 1 4 4 H 1.48498 * 109.47075 * 269.99882 * 3 2 1 5 5 H 1.48507 * 109.46896 * 29.99595 * 3 2 1 6 6 H 1.48495 * 109.47009 * 149.99347 * 3 2 1 7 7 C 1.37878 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99622 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99941 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47096 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47291 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99502 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00165 * 180.02562 * 11 10 9 14 14 N 1.40101 * 120.00054 * 180.02562 * 13 11 10 15 15 C 1.39812 * 120.00067 * 179.97438 * 14 13 11 16 16 C 1.38900 * 120.03512 * 359.97438 * 15 14 13 17 17 C 1.38137 * 119.98990 * 179.97438 * 16 15 14 18 18 C 1.38419 * 120.07304 * 0.02562 * 17 16 15 19 19 F 1.35100 * 119.95960 * 180.27737 * 18 17 16 20 20 C 1.38665 * 120.08031 * 0.02562 * 18 17 16 21 21 F 1.35099 * 119.99773 * 179.97438 * 20 18 17 22 22 C 1.38324 * 120.00273 * 359.97438 * 20 18 17 23 23 H 0.97000 * 120.00209 * 0.02562 * 1 2 3 24 24 H 1.09010 * 109.47336 * 60.00577 * 9 7 2 25 25 H 1.08998 * 109.47425 * 300.00467 * 9 7 2 26 26 H 1.08996 * 109.46923 * 60.00491 * 10 9 7 27 27 H 1.08992 * 109.47095 * 300.00119 * 10 9 7 28 28 H 0.96993 * 119.99541 * 359.97438 * 13 11 10 29 29 H 0.97003 * 119.99823 * 359.97438 * 14 13 11 30 30 H 1.07994 * 120.00246 * 0.02562 * 16 15 14 31 31 H 1.07994 * 119.96099 * 180.02562 * 17 16 15 32 32 H 1.08002 * 120.03233 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5285 -2.6365 0.0009 12 8 6.1349 -1.5861 0.0015 13 7 6.2024 -3.8037 0.0003 14 7 7.6034 -3.8037 0.0008 15 6 8.3025 -5.0145 0.0007 16 6 7.6088 -6.2178 0.0006 17 6 8.3004 -7.4136 0.0000 18 6 9.6846 -7.4142 -0.0001 19 9 10.3588 -8.5850 -0.0064 20 6 10.3802 -6.2147 0.0011 21 9 11.7312 -6.2172 0.0015 22 6 9.6909 -5.0154 0.0017 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8912 25 1 3.8752 -0.6803 -0.8888 26 1 3.6586 -3.1501 -0.8893 27 1 3.6578 -3.1505 0.8906 28 1 5.7174 -4.6437 0.0003 29 1 8.0884 -2.9636 0.0012 30 1 6.5288 -6.2186 0.0002 31 1 7.7606 -8.3489 -0.0005 32 1 10.2321 -4.0808 0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885113451.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:54 Heat of formation + Delta-G solvation = -90.895726 kcal Electronic energy + Delta-G solvation = -19122.115051 eV Core-core repulsion = 15525.978743 eV Total energy + Delta-G solvation = -3596.136308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.43397 -49.48900 -41.19082 -39.97474 -36.88229 -35.53673 -33.65184 -32.82406 -31.67141 -29.33885 -27.61581 -24.65592 -23.71322 -22.86641 -21.60290 -19.71598 -19.22933 -18.75561 -18.45928 -17.68502 -17.29042 -17.28900 -16.69747 -16.39465 -16.04380 -15.93573 -15.50977 -15.19517 -14.95184 -14.86102 -14.64156 -14.04078 -13.97534 -13.61482 -13.40776 -12.91690 -12.32136 -12.31011 -12.13867 -11.96715 -11.75681 -11.38415 -11.05904 -10.76215 -10.41279 -10.03249 -8.38412 -8.29449 -6.32188 -0.05435 0.09276 0.80991 1.35099 1.38185 1.51170 1.54836 2.36316 2.41333 2.84620 3.06986 3.10366 3.36917 3.60276 3.78440 3.95184 4.08655 4.36082 4.48629 4.50829 4.76109 4.86768 4.97158 4.98561 5.05410 5.37167 5.46023 5.46276 5.63202 5.79091 6.19167 6.26777 6.58138 6.75847 7.27263 7.33430 8.85981 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.051960 B = 0.002963 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.747897 B = 9447.326440 C = 9965.626027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.003 3.997 10 C -0.105 4.105 11 C 0.517 3.483 12 O -0.581 6.581 13 N -0.513 5.513 14 N -0.538 5.538 15 C 0.238 3.762 16 C -0.178 4.178 17 C -0.057 4.057 18 C -0.014 4.014 19 F -0.146 7.146 20 C 0.108 3.892 21 F -0.138 7.138 22 C -0.204 4.204 23 H 0.266 0.734 24 H 0.012 0.988 25 H 0.011 0.989 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.439 0.561 29 H 0.434 0.566 30 H 0.161 0.839 31 H 0.175 0.825 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.512 -16.010 0.003 24.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.035 4.035 10 C -0.146 4.146 11 C 0.306 3.694 12 O -0.458 6.458 13 N -0.262 5.262 14 N -0.262 5.262 15 C 0.132 3.868 16 C -0.201 4.201 17 C -0.076 4.076 18 C -0.036 4.036 19 F -0.125 7.125 20 C 0.087 3.913 21 F -0.116 7.116 22 C -0.228 4.228 23 H 0.075 0.925 24 H 0.031 0.969 25 H 0.029 0.971 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.284 0.716 29 H 0.277 0.723 30 H 0.179 0.821 31 H 0.193 0.807 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 18.643 -15.179 0.005 24.041 hybrid contribution 0.522 0.761 -0.018 0.923 sum 19.165 -14.418 -0.013 23.983 Atomic orbital electron populations 1.70017 1.07817 1.28034 1.52607 1.25785 0.95425 1.02800 0.94449 0.85863 0.79317 0.79699 0.79016 1.19546 1.20832 1.18314 1.21424 0.91201 0.93781 1.50055 0.92677 1.19256 0.93928 0.93652 0.96690 1.21468 0.86505 1.00324 1.06255 1.21564 0.91075 0.81955 0.74818 1.90684 1.70841 1.32766 1.51557 1.44973 0.94398 1.10414 1.76441 1.43479 0.93882 1.07052 1.81811 1.17521 0.89927 0.85369 0.93985 1.20709 1.01567 0.89288 1.08573 1.21050 0.90149 1.00654 0.95777 1.17692 0.91417 0.79845 1.14663 1.91471 1.80556 1.45509 1.94952 1.17391 0.76820 0.93363 1.03690 1.91503 1.28898 1.97335 1.93892 1.20254 0.92304 0.97887 1.12400 0.92463 0.96945 0.97076 0.86741 0.86752 0.71566 0.72257 0.82139 0.80739 0.82463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.26 13.96 21.45 0.30 -56.96 16 2 C 0.01 0.75 5.47 84.66 0.46 1.21 16 3 Si 0.94 44.83 27.47 68.60 1.88 46.72 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 6 H -0.26 -12.19 6.54 99.48 0.65 -11.54 16 7 C -0.53 -28.42 9.66 25.60 0.25 -28.17 16 8 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 9 C 0.00 0.13 3.33 29.85 0.10 0.23 16 10 C -0.10 -3.28 5.64 29.85 0.17 -3.11 16 11 C 0.52 15.15 7.95 87.66 0.70 15.84 16 12 O -0.58 -22.18 15.82 -3.05 -0.05 -22.22 16 13 N -0.51 -10.07 6.22 -173.53 -1.08 -11.15 16 14 N -0.54 -10.15 6.46 -51.34 -0.33 -10.48 16 15 C 0.24 3.74 6.72 38.17 0.26 4.00 16 16 C -0.18 -2.15 9.48 22.40 0.21 -1.94 16 17 C -0.06 -0.70 10.02 22.29 0.22 -0.48 16 18 C -0.01 -0.25 7.30 22.41 0.16 -0.09 16 19 F -0.15 -3.03 17.18 44.97 0.77 -2.26 16 20 C 0.11 2.05 7.30 22.39 0.16 2.22 16 21 F -0.14 -2.99 17.18 44.97 0.77 -2.21 16 22 C -0.20 -3.32 9.87 22.43 0.22 -3.10 16 23 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 24 H 0.01 0.58 7.16 -2.38 -0.02 0.57 16 25 H 0.01 0.51 7.53 -2.39 -0.02 0.49 16 26 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 27 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.44 5.34 6.60 -213.33 -1.41 3.93 16 29 H 0.43 8.84 8.01 -213.32 -1.71 7.13 16 30 H 0.16 1.10 6.20 -2.91 -0.02 1.08 16 31 H 0.18 1.17 8.06 -2.91 -0.02 1.14 16 32 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -70.92 291.96 3.20 -67.72 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -1.99 Total: 4.23 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 2.92 Total: -13.39 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -1.11 Total: -78.59 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.05 Total: -22.22 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 1.54 Total: -4.48 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.72 kcal Total: -70.92 3.20 -67.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885113451.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.174 kcal (2) G-P(sol) polarization free energy of solvation -70.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds