Wall clock time and date at job start Mon Mar 30 2020 01:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29196 * 125.34834 * 2 1 4 4 N 1.40280 * 107.86525 * 180.16303 * 3 2 1 5 5 C 1.46497 * 126.63413 * 179.82028 * 4 3 2 6 6 C 1.50700 * 109.47128 * 269.68373 * 5 4 3 7 7 O 1.20822 * 119.99958 * 0.02562 * 6 5 4 8 8 O 1.34234 * 120.00068 * 180.02562 * 6 5 4 9 9 C 1.45196 * 116.99938 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47070 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47242 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47188 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00305 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99992 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99984 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00093 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47148 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47459 * 120.00220 * 16 14 12 19 19 H 1.48504 * 109.47236 * 240.00174 * 16 14 12 20 20 C 1.35032 * 106.72408 * 359.55552 * 4 3 2 21 21 O 1.21704 * 126.37230 * 180.24524 * 20 4 3 22 22 O 1.34314 * 107.25507 * 0.26275 * 20 4 3 23 23 H 1.08994 * 109.47252 * 180.31047 * 1 2 3 24 24 H 1.09003 * 109.47015 * 300.30600 * 1 2 3 25 25 H 1.09003 * 109.47479 * 60.30827 * 1 2 3 26 26 H 1.09004 * 109.47268 * 149.68513 * 5 4 3 27 27 H 1.08997 * 109.47471 * 29.68921 * 5 4 3 28 28 H 1.08996 * 109.47465 * 299.99911 * 9 8 6 29 29 H 1.08999 * 109.47008 * 59.99921 * 9 8 6 30 30 H 1.08998 * 109.47592 * 300.00297 * 10 9 8 31 31 H 1.08999 * 109.47084 * 60.00195 * 10 9 8 32 32 H 1.09004 * 109.47100 * 299.99832 * 11 10 9 33 33 H 1.08999 * 109.47046 * 60.00020 * 11 10 9 34 34 H 0.96998 * 119.99842 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2544 1.0538 0.0000 4 7 3.5924 0.6324 -0.0038 5 6 4.7793 1.4910 -0.0088 6 6 5.1863 1.7772 -1.4313 7 8 4.5499 1.3120 -2.3470 8 8 6.2559 2.5489 -1.6812 9 6 6.5897 2.7816 -3.0749 10 6 7.8275 3.6768 -3.1603 11 6 8.1789 3.9226 -4.6289 12 6 9.3986 4.8038 -4.7130 13 1 9.8751 5.1539 -3.8093 14 6 9.9060 5.1631 -5.9436 15 7 9.3254 4.7371 -7.0442 16 14 11.4173 6.2559 -6.0478 17 1 11.8765 6.5977 -4.6776 18 1 12.4990 5.5375 -6.7681 19 1 11.0775 7.5020 -6.7806 20 6 3.5746 -0.7178 0.0041 21 8 4.5449 -1.4525 0.0080 22 8 2.2867 -1.0992 0.0064 23 1 -0.3633 -1.0276 0.0056 24 1 -0.3633 0.5186 0.8873 25 1 -0.3634 0.5090 -0.8927 26 1 5.5954 0.9859 0.5079 27 1 4.5522 2.4280 0.4996 28 1 6.7953 1.8291 -3.5633 29 1 5.7525 3.2715 -3.5721 30 1 7.6215 4.6293 -2.6721 31 1 8.6649 3.1872 -2.6630 32 1 8.3849 2.9702 -5.1175 33 1 7.3414 4.4123 -5.1258 34 1 9.6821 4.9902 -7.9099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885357321.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:18 Heat of formation + Delta-G solvation = -125.158948 kcal Electronic energy + Delta-G solvation = -19752.099051 eV Core-core repulsion = 16265.564494 eV Total energy + Delta-G solvation = -3486.534557 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.63365 -41.67772 -39.41214 -38.22535 -37.24073 -35.98057 -34.25912 -33.71609 -31.52998 -29.24241 -28.20151 -25.49047 -24.49364 -23.47235 -22.26731 -22.15280 -19.43447 -19.08262 -18.71642 -18.39601 -18.02345 -17.83676 -17.26429 -16.88562 -16.49043 -15.85437 -15.43048 -15.08188 -14.83443 -14.22323 -14.19321 -13.83024 -13.66514 -13.61854 -13.42632 -13.16237 -13.08075 -12.86709 -12.52855 -12.42308 -12.23210 -12.15907 -11.96275 -11.51690 -11.47737 -11.25385 -10.59597 -10.27226 -8.23373 -6.35003 0.16522 0.47248 0.83505 0.90941 1.40729 1.41360 1.44177 1.55247 1.70709 2.40438 2.92092 3.10824 3.37367 3.67455 3.93830 3.98715 4.01251 4.09022 4.19412 4.35360 4.52028 4.66846 4.71720 4.76516 4.81167 5.04725 5.14778 5.28657 5.47804 5.61130 5.78510 6.05764 6.16773 6.26327 6.46363 6.81396 7.34849 8.89211 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.049613 B = 0.002753 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.230889 B =10169.409824 C =10301.092916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.259 3.741 3 N -0.285 5.285 4 N -0.451 5.451 5 C 0.171 3.829 6 C 0.439 3.561 7 O -0.541 6.541 8 O -0.345 6.345 9 C 0.079 3.921 10 C -0.093 4.093 11 C 0.024 3.976 12 C -0.541 4.541 13 H 0.067 0.933 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.970 3.030 17 H -0.258 1.258 18 H -0.279 1.279 19 H -0.278 1.278 20 C 0.606 3.394 21 O -0.517 6.517 22 O -0.274 6.274 23 H 0.120 0.880 24 H 0.135 0.865 25 H 0.121 0.879 26 H 0.169 0.831 27 H 0.187 0.813 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.069 0.931 32 H -0.006 1.006 33 H -0.003 1.003 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.950 -6.965 19.524 28.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.034 3.966 3 N -0.114 5.114 4 N -0.281 5.281 5 C 0.051 3.949 6 C 0.282 3.718 7 O -0.431 6.431 8 O -0.260 6.260 9 C 0.005 3.995 10 C -0.130 4.130 11 C -0.013 4.013 12 C -0.579 4.579 13 H 0.085 0.915 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.795 3.205 17 H -0.182 1.182 18 H -0.205 1.205 19 H -0.204 1.204 20 C 0.358 3.642 21 O -0.400 6.400 22 O -0.170 6.170 23 H 0.138 0.862 24 H 0.153 0.847 25 H 0.140 0.860 26 H 0.186 0.814 27 H 0.204 0.796 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.012 0.988 33 H 0.015 0.985 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.500 -6.765 19.052 27.404 hybrid contribution 0.941 -0.436 -1.081 1.498 sum -17.559 -7.202 17.971 26.137 Atomic orbital electron populations 1.20993 0.75426 1.08022 1.07839 1.27925 0.98638 0.77328 0.92747 1.77221 0.87090 1.22613 1.24471 1.49472 1.05078 1.04820 1.68758 1.21279 0.84790 0.99355 0.89505 1.24744 0.77973 0.75082 0.94022 1.90689 1.53925 1.50065 1.48376 1.86455 1.44600 1.63088 1.31867 1.23186 0.98667 1.00020 0.77603 1.21465 0.94505 0.98610 0.98454 1.18952 0.95699 0.95484 0.91157 1.21655 1.12568 1.30751 0.92920 0.91455 1.26040 1.00812 0.97845 0.95386 1.70114 1.42419 1.46783 0.98231 0.85316 0.78401 0.78100 0.78734 1.18209 1.20515 1.20369 1.19384 0.82476 0.83471 0.78883 1.91192 1.32857 1.59047 1.56950 1.85188 1.17459 1.36101 1.78292 0.86175 0.84674 0.86035 0.81365 0.79624 0.92367 0.91742 0.90872 0.91257 0.98759 0.98464 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.14 10.51 71.23 0.75 0.61 16 2 C 0.26 3.87 8.36 88.49 0.74 4.61 16 3 N -0.28 -5.60 12.55 -166.08 -2.08 -7.68 16 4 N -0.45 -10.48 3.13 -594.35 -1.86 -12.34 16 5 C 0.17 3.19 7.01 85.63 0.60 3.79 16 6 C 0.44 12.83 8.03 71.24 0.57 13.40 16 7 O -0.54 -20.33 16.18 21.98 0.36 -19.97 16 8 O -0.34 -10.69 10.22 -51.46 -0.53 -11.22 16 9 C 0.08 2.92 5.47 71.98 0.39 3.31 16 10 C -0.09 -3.79 5.53 30.59 0.17 -3.62 16 11 C 0.02 1.28 4.97 29.85 0.15 1.43 16 12 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 13 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 14 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 15 N -0.94 -57.22 13.29 21.45 0.28 -56.93 16 16 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 17 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 C 0.61 16.67 9.25 129.75 1.20 17.87 16 21 O -0.52 -17.56 17.93 18.77 0.34 -17.23 16 22 O -0.27 -6.00 10.71 15.88 0.17 -5.83 16 23 H 0.12 -0.14 8.14 -2.39 -0.02 -0.16 16 24 H 0.14 -0.35 8.14 -2.39 -0.02 -0.36 16 25 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.17 2.33 8.13 -2.38 -0.02 2.31 16 27 H 0.19 1.89 8.14 -2.39 -0.02 1.88 16 28 H 0.06 2.26 8.13 -2.39 -0.02 2.24 16 29 H 0.06 2.43 8.13 -2.39 -0.02 2.41 16 30 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 32 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -81.25 314.15 5.08 -76.16 By element: Atomic # 1 Polarization: -3.51 SS G_CDS: 1.11 Total: -2.40 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 5.27 Total: 11.38 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -3.66 Total: -76.95 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: 0.34 Total: -54.24 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -81.25 5.08 -76.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885357321.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.995 kcal (2) G-P(sol) polarization free energy of solvation -81.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds