Wall clock time and date at job start Mon Mar 30 2020 01:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00094 * 2 1 4 4 H 1.48506 * 109.46967 * 270.00398 * 3 2 1 5 5 H 1.48496 * 109.47004 * 30.00102 * 3 2 1 6 6 H 1.48499 * 109.47154 * 150.00393 * 3 2 1 7 7 C 1.37876 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00312 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99617 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46662 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.47061 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00497 * 180.02562 * 11 10 9 13 13 O 1.21556 * 119.99686 * 359.97438 * 12 11 10 14 14 C 1.47837 * 120.00230 * 179.97438 * 12 11 10 15 15 C 1.40024 * 120.55983 * 359.97438 * 14 12 11 16 16 C 1.38361 * 118.28577 * 180.02562 * 15 14 12 17 17 C 1.38351 * 119.30683 * 0.28083 * 16 15 14 18 18 N 1.31932 * 121.07355 * 359.41774 * 17 16 15 19 19 C 1.31692 * 121.88469 * 0.59592 * 18 17 16 20 20 C 1.50692 * 119.71836 * 179.72531 * 19 18 17 21 21 F 1.39900 * 109.47406 * 119.97877 * 20 19 18 22 22 F 1.39900 * 109.46962 * 239.97821 * 20 19 18 23 23 H 0.97002 * 119.99702 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47026 * 60.00769 * 9 7 2 25 25 H 1.08995 * 109.47381 * 299.99761 * 9 7 2 26 26 H 1.08993 * 109.47481 * 60.00565 * 10 9 7 27 27 H 1.09009 * 109.47455 * 299.99731 * 10 9 7 28 28 H 0.97002 * 119.99562 * 359.97438 * 11 10 9 29 29 H 1.07990 * 120.85356 * 0.02562 * 15 14 12 30 30 H 1.08002 * 120.34279 * 179.97438 * 16 15 14 31 31 H 1.07994 * 119.46267 * 179.70338 * 17 16 15 32 32 H 1.09005 * 109.47521 * 359.97308 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1866 -6.0980 -0.0007 13 8 3.4022 -6.0980 -0.0003 14 6 1.4474 -7.3783 -0.0008 15 6 0.0472 -7.3919 -0.0007 16 6 -0.5965 -8.6167 -0.0002 17 6 0.1563 -9.7774 0.0061 18 7 1.4749 -9.7339 0.0002 19 6 2.1333 -8.5933 -0.0003 20 6 3.6402 -8.6006 -0.0010 21 9 4.1093 -7.9440 -1.1438 22 9 4.1101 -7.9427 1.1407 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8720 -3.6043 -0.8906 28 1 0.5428 -4.9307 -0.0011 29 1 -0.5156 -6.4703 -0.0011 30 1 -1.6754 -8.6660 0.0003 31 1 -0.3435 -10.7347 0.0114 32 1 3.9986 -9.6300 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889911917.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:26 Heat of formation + Delta-G solvation = -103.630959 kcal Electronic energy + Delta-G solvation = -20183.248929 eV Core-core repulsion = 16586.560379 eV Total energy + Delta-G solvation = -3596.688549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.66781 -46.64924 -40.77990 -38.82637 -35.03410 -33.43930 -32.68975 -32.28278 -29.63899 -26.99305 -25.25186 -24.28433 -22.55470 -21.12881 -20.55459 -18.21204 -17.59777 -17.20631 -16.96964 -16.53608 -16.03421 -15.34382 -15.19412 -15.01005 -14.53218 -14.13849 -14.08995 -13.48610 -13.27435 -13.08647 -13.07508 -12.80587 -12.32661 -12.20494 -11.31014 -11.23581 -11.06104 -10.66693 -10.40737 -10.29718 -10.16110 -9.85756 -9.57204 -9.51525 -9.25809 -8.60246 -8.40214 -6.12404 -4.15161 0.28505 0.71028 2.85103 3.26877 3.28434 3.33905 3.36468 3.43230 3.58917 4.10963 4.27658 4.38965 4.39808 4.50459 4.72890 4.90485 5.05042 5.16677 5.22059 5.25093 5.55569 5.65971 6.06424 6.28048 6.30597 6.68338 6.78778 7.35358 7.46116 7.56187 7.83398 7.86630 8.23053 8.47588 8.90595 9.50020 10.99260 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.029164 B = 0.004165 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.843775 B = 6720.852990 C = 7495.598767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.122 3.878 11 N -0.712 5.712 12 C 0.540 3.460 13 O -0.514 6.514 14 C -0.139 4.139 15 C -0.047 4.047 16 C -0.158 4.158 17 C 0.114 3.886 18 N -0.464 5.464 19 C 0.097 3.903 20 C 0.339 3.661 21 F -0.182 7.182 22 F -0.182 7.182 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.395 0.605 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.168 0.832 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 -19.936 0.018 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.001 3.999 11 N -0.362 5.362 12 C 0.324 3.676 13 O -0.391 6.391 14 C -0.145 4.145 15 C -0.073 4.073 16 C -0.177 4.177 17 C -0.043 4.043 18 N -0.173 5.173 19 C -0.044 4.044 20 C 0.284 3.716 21 F -0.163 7.163 22 F -0.163 7.163 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.229 0.771 29 H 0.167 0.833 30 H 0.167 0.833 31 H 0.185 0.815 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.255 -20.515 0.019 20.554 hybrid contribution -0.792 1.841 -0.011 2.004 sum -2.047 -18.675 0.008 18.787 Atomic orbital electron populations 1.69950 1.06113 1.26916 1.50394 1.24988 0.94893 0.99436 0.94906 0.86501 0.79868 0.82909 0.78234 1.20530 1.21160 1.19672 1.21041 0.93306 0.90289 1.51389 0.92154 1.19337 0.94205 0.91138 0.97833 1.21809 0.96078 0.80823 1.01232 1.46206 1.10374 1.06368 1.73284 1.17977 0.87587 0.83430 0.78587 1.90872 1.12552 1.86990 1.48660 1.21081 0.94878 0.95467 1.03054 1.21941 0.92889 0.99650 0.92847 1.22269 1.02280 0.92872 1.00308 1.22960 0.88690 0.99128 0.93538 1.67321 1.10539 1.27899 1.11529 1.21897 0.96897 0.88501 0.97090 1.19767 0.86080 0.92779 0.72957 1.93055 1.88924 1.83927 1.50363 1.93056 1.88889 1.83868 1.50444 0.92830 0.95922 0.95924 0.92133 0.92142 0.77064 0.83324 0.83347 0.81459 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.59 5.61 -4.04 -0.02 2.56 16 11 N -0.71 -12.41 5.51 -61.25 -0.34 -12.74 16 12 C 0.54 9.56 7.58 -12.34 -0.09 9.46 16 13 O -0.51 -10.73 11.34 5.32 0.06 -10.67 16 14 C -0.14 -1.97 5.85 -104.82 -0.61 -2.58 16 15 C -0.05 -0.49 9.65 -38.87 -0.37 -0.86 16 16 C -0.16 -1.23 10.10 -39.49 -0.40 -1.62 16 17 C 0.11 0.96 11.17 -17.47 -0.20 0.76 16 18 N -0.46 -5.38 10.24 -9.15 -0.09 -5.48 16 19 C 0.10 1.33 6.31 -82.18 -0.52 0.81 16 20 C 0.34 4.84 5.02 36.00 0.18 5.02 16 21 F -0.18 -3.06 15.04 2.25 0.03 -3.03 16 22 F -0.18 -3.06 15.03 2.25 0.03 -3.03 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 27 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 28 H 0.39 5.76 6.58 -40.82 -0.27 5.49 16 29 H 0.15 1.25 6.52 -52.49 -0.34 0.91 16 30 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 31 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.12 1.25 8.11 -51.93 -0.42 0.83 16 LS Contribution 288.19 15.07 4.34 4.34 Total: -1.00 -33.36 288.19 -5.94 -39.31 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -3.11 Total: -0.44 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -2.59 Total: 0.59 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.31 Total: -43.34 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.06 Total: -10.67 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.07 Total: -6.06 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.36 -5.94 -39.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889911917.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.324 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds