Wall clock time and date at job start Mon Mar 30 2020 01:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00094 * 2 1 4 4 H 1.48506 * 109.46967 * 270.00398 * 3 2 1 5 5 H 1.48496 * 109.47004 * 30.00102 * 3 2 1 6 6 H 1.48499 * 109.47154 * 150.00393 * 3 2 1 7 7 C 1.37876 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00312 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99617 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46662 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.47061 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00497 * 180.02562 * 11 10 9 13 13 O 1.21556 * 119.99686 * 359.97438 * 12 11 10 14 14 C 1.47837 * 120.00230 * 179.97438 * 12 11 10 15 15 C 1.40024 * 120.55983 * 359.97438 * 14 12 11 16 16 C 1.38361 * 118.28577 * 180.02562 * 15 14 12 17 17 C 1.38351 * 119.30683 * 0.28083 * 16 15 14 18 18 N 1.31932 * 121.07355 * 359.41774 * 17 16 15 19 19 C 1.31692 * 121.88469 * 0.59592 * 18 17 16 20 20 C 1.50692 * 119.71836 * 179.72531 * 19 18 17 21 21 F 1.39900 * 109.47406 * 119.97877 * 20 19 18 22 22 F 1.39900 * 109.46962 * 239.97821 * 20 19 18 23 23 H 0.97002 * 119.99702 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47026 * 60.00769 * 9 7 2 25 25 H 1.08995 * 109.47381 * 299.99761 * 9 7 2 26 26 H 1.08993 * 109.47481 * 60.00565 * 10 9 7 27 27 H 1.09009 * 109.47455 * 299.99731 * 10 9 7 28 28 H 0.97002 * 119.99562 * 359.97438 * 11 10 9 29 29 H 1.07990 * 120.85356 * 0.02562 * 15 14 12 30 30 H 1.08002 * 120.34279 * 179.97438 * 16 15 14 31 31 H 1.07994 * 119.46267 * 179.70338 * 17 16 15 32 32 H 1.09005 * 109.47521 * 359.97308 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1866 -6.0980 -0.0007 13 8 3.4022 -6.0980 -0.0003 14 6 1.4474 -7.3783 -0.0008 15 6 0.0472 -7.3919 -0.0007 16 6 -0.5965 -8.6167 -0.0002 17 6 0.1563 -9.7774 0.0061 18 7 1.4749 -9.7339 0.0002 19 6 2.1333 -8.5933 -0.0003 20 6 3.6402 -8.6006 -0.0010 21 9 4.1093 -7.9440 -1.1438 22 9 4.1101 -7.9427 1.1407 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8720 -3.6043 -0.8906 28 1 0.5428 -4.9307 -0.0011 29 1 -0.5156 -6.4703 -0.0011 30 1 -1.6754 -8.6660 0.0003 31 1 -0.3435 -10.7347 0.0114 32 1 3.9986 -9.6300 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889911917.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:25 Heat of formation + Delta-G solvation = -126.976162 kcal Electronic energy + Delta-G solvation = -20184.261252 eV Core-core repulsion = 16586.560379 eV Total energy + Delta-G solvation = -3597.700873 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.84113 -47.85380 -41.74413 -40.10627 -36.70666 -35.00667 -33.97391 -33.24096 -31.42259 -28.09116 -26.82503 -25.47849 -23.65425 -22.79575 -21.90921 -19.30148 -18.63309 -18.52560 -18.26237 -18.14024 -17.27121 -16.63593 -16.51378 -16.31094 -16.07925 -15.41638 -15.34859 -14.64495 -14.50282 -14.31868 -14.24179 -14.13458 -14.10404 -13.24471 -13.22092 -12.95375 -12.55486 -12.33902 -12.26989 -11.69749 -11.49584 -11.17522 -11.14508 -10.69926 -10.61548 -10.44403 -10.06145 -8.25488 -6.35527 -0.61519 -0.07471 1.41706 1.41772 1.53378 1.74926 2.04547 2.36178 2.42081 2.58792 3.09660 3.21880 3.31600 3.52737 3.68992 3.87312 4.05865 4.11597 4.23972 4.33112 4.45669 4.49853 4.80463 4.81895 4.94057 5.19417 5.39858 5.45490 5.55515 5.76200 6.14246 6.44570 6.57751 6.76803 7.10823 7.33803 8.86340 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.029164 B = 0.004165 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.843775 B = 6720.852990 C = 7495.598767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.142 3.858 11 N -0.707 5.707 12 C 0.538 3.462 13 O -0.554 6.554 14 C -0.169 4.169 15 C -0.049 4.049 16 C -0.137 4.137 17 C 0.122 3.878 18 N -0.475 5.475 19 C 0.082 3.918 20 C 0.326 3.674 21 F -0.202 7.202 22 F -0.202 7.202 23 H 0.266 0.734 24 H 0.011 0.989 25 H 0.011 0.989 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.409 0.591 29 H 0.165 0.835 30 H 0.195 0.805 31 H 0.213 0.787 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.273 -21.292 0.011 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.587 4.587 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.019 3.981 11 N -0.359 5.359 12 C 0.324 3.676 13 O -0.433 6.433 14 C -0.174 4.174 15 C -0.075 4.075 16 C -0.156 4.156 17 C -0.035 4.035 18 N -0.184 5.184 19 C -0.058 4.058 20 C 0.271 3.729 21 F -0.184 7.184 22 F -0.184 7.184 23 H 0.075 0.925 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.246 0.754 29 H 0.183 0.817 30 H 0.212 0.788 31 H 0.230 0.770 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.050 -21.890 0.011 22.101 hybrid contribution -0.359 2.126 -0.009 2.156 sum -3.409 -19.764 0.002 20.056 Atomic orbital electron populations 1.70042 1.07439 1.28025 1.50924 1.25821 0.95789 1.02937 0.94330 0.85470 0.78636 0.78573 0.78528 1.19773 1.20379 1.19238 1.21449 0.93559 0.91953 1.51699 0.92475 1.19135 0.94160 0.91501 0.96563 1.21276 0.95120 0.81700 0.99993 1.45948 1.10980 1.05292 1.73641 1.18561 0.87393 0.84487 0.77116 1.90843 1.14444 1.87711 1.50314 1.20812 0.96444 0.93379 1.06788 1.22238 0.91262 1.01834 0.92122 1.22773 1.04410 0.91166 0.97294 1.23842 0.87610 1.01408 0.90655 1.67385 1.12273 1.26581 1.12165 1.21745 0.96458 0.89161 0.98427 1.20336 0.87315 0.93706 0.71498 1.92997 1.89340 1.84568 1.51461 1.92998 1.89306 1.84512 1.51540 0.92485 0.97027 0.97031 0.93432 0.93421 0.75361 0.81747 0.78801 0.77031 0.82638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.61 13.29 21.45 0.28 -53.32 16 2 C 0.01 0.57 5.46 84.65 0.46 1.03 16 3 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -30.68 9.11 25.60 0.23 -30.44 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.02 1.20 5.09 29.85 0.15 1.35 16 10 C 0.14 6.24 5.61 86.38 0.48 6.73 16 11 N -0.71 -25.13 5.51 -465.97 -2.57 -27.70 16 12 C 0.54 19.54 7.58 86.78 0.66 20.20 16 13 O -0.55 -24.22 11.34 -3.89 -0.04 -24.26 16 14 C -0.17 -4.67 5.85 -19.99 -0.12 -4.79 16 15 C -0.05 -0.88 9.65 22.73 0.22 -0.66 16 16 C -0.14 -1.49 10.10 22.33 0.23 -1.26 16 17 C 0.12 1.50 11.17 84.70 0.95 2.45 16 18 N -0.48 -9.82 10.24 -182.85 -1.87 -11.69 16 19 C 0.08 2.18 6.31 42.89 0.27 2.46 16 20 C 0.33 9.46 5.02 71.23 0.36 9.82 16 21 F -0.20 -7.12 15.04 44.97 0.68 -6.44 16 22 F -0.20 -7.11 15.03 44.97 0.68 -6.44 16 23 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 28 H 0.41 11.89 6.58 -92.71 -0.61 11.28 16 29 H 0.17 2.34 6.52 -2.92 -0.02 2.32 16 30 H 0.19 0.38 8.06 -2.91 -0.02 0.36 16 31 H 0.21 0.66 8.06 -2.91 -0.02 0.64 16 32 H 0.16 3.18 8.11 -2.38 -0.02 3.17 16 Total: -1.00 -74.78 288.19 3.63 -71.15 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.55 Total: 6.21 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 3.89 Total: 6.86 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -4.15 Total: -92.71 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.04 Total: -24.26 kcal Atomic # 9 Polarization: -14.23 SS G_CDS: 1.35 Total: -12.88 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -74.78 3.63 -71.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889911917.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.822 kcal (2) G-P(sol) polarization free energy of solvation -74.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds