Wall clock time and date at job start Mon Mar 30 2020 01:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 N 1.40513 * 127.02381 * 265.02656 * 3 2 1 5 5 H 0.96996 * 126.60992 * 359.95976 * 4 3 2 6 6 C 1.35021 * 106.77438 * 179.97438 * 4 3 2 7 7 C 1.50695 * 125.32211 * 180.02562 * 6 4 3 8 8 N 1.30814 * 109.35262 * 359.97438 * 6 4 3 9 9 C 1.34148 * 110.10812 * 359.76677 * 8 6 4 10 10 N 1.33133 * 126.09930 * 180.24124 * 9 8 6 11 11 C 1.33005 * 119.99965 * 0.16358 * 10 9 8 12 12 O 1.21568 * 119.99745 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00062 * 180.02562 * 11 10 9 14 14 S 1.81002 * 109.47138 * 179.97438 * 13 11 10 15 15 C 1.76197 * 99.99960 * 179.97438 * 14 13 11 16 16 H 1.07996 * 119.99908 * 0.02562 * 15 14 13 17 17 C 1.38795 * 119.99813 * 179.97438 * 15 14 13 18 18 N 1.31634 * 120.00397 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00123 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47062 * 90.00254 * 19 17 15 21 21 H 1.48501 * 109.47444 * 210.00359 * 19 17 15 22 22 H 1.48497 * 109.46994 * 330.00475 * 19 17 15 23 23 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 28 28 H 1.09006 * 109.46841 * 90.00033 * 7 6 4 29 29 H 1.08999 * 109.47311 * 209.99954 * 7 6 4 30 30 H 1.09001 * 109.47161 * 330.00194 * 7 6 4 31 31 H 1.08997 * 109.46772 * 299.99589 * 13 11 10 32 32 H 1.09001 * 109.47277 * 59.99865 * 13 11 10 33 33 H 0.96996 * 120.00238 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3920 2.1465 -1.1176 5 1 2.3774 1.8618 -2.0447 6 6 2.7754 3.3546 -0.6521 7 6 3.2586 4.5021 -1.5010 8 7 2.6608 3.3733 0.6509 9 6 2.1977 2.1935 1.0902 10 7 1.9583 1.8679 2.3587 11 6 2.1767 2.7548 3.3255 12 8 2.5954 3.8626 3.0508 13 6 1.9062 2.3862 4.7615 14 16 2.2991 3.7933 5.8299 15 6 1.9013 3.1043 7.4020 16 1 1.5364 2.0901 7.4703 17 6 2.0579 3.8645 8.5526 18 7 2.5032 5.1004 8.4694 19 14 1.6356 3.1343 10.2193 20 1 2.8377 2.4750 10.7899 21 1 1.1828 4.2142 11.1326 22 1 0.5504 2.1330 10.0604 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.4096 5.1195 -1.7945 29 1 3.9654 5.1041 -0.9299 30 1 3.7502 4.1128 -2.3925 31 1 0.8546 2.1240 4.8773 32 1 2.5260 1.5341 5.0408 33 1 2.6123 5.6318 9.2735 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912167786.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:59 Heat of formation + Delta-G solvation = 91.511340 kcal Electronic energy + Delta-G solvation = -17806.881250 eV Core-core repulsion = 14804.787843 eV Total energy + Delta-G solvation = -3002.093407 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.32040 -38.30925 -35.60183 -33.92038 -32.22200 -31.74439 -31.09979 -28.83215 -28.27549 -25.28933 -24.02752 -22.05198 -21.77780 -19.19995 -18.23027 -17.22606 -16.53129 -16.08878 -15.85561 -14.75934 -14.62186 -14.33221 -14.22135 -13.90267 -13.80271 -13.38739 -13.06249 -12.79101 -12.45445 -12.33220 -11.78202 -11.65628 -10.92456 -10.83578 -10.74844 -10.58556 -10.53562 -10.18261 -9.76354 -9.56033 -8.86597 -8.43012 -7.91206 -7.82030 -6.23052 -6.01008 -3.68180 0.85675 0.94078 2.68453 3.25420 3.35727 3.36985 3.42927 3.74569 3.89662 4.31712 4.34899 4.41867 4.48773 4.67006 4.76619 4.89595 4.98965 5.18169 5.25610 5.33204 5.33277 5.42216 5.67973 5.76264 5.86190 6.06143 6.42677 6.66348 6.72333 7.18610 7.62764 7.80338 8.21734 8.56953 9.33202 9.43862 11.06618 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032258 B = 0.003936 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.781972 B = 7111.762746 C = 7881.255964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.148 3.852 3 N -0.415 5.415 4 N -0.502 5.502 5 H 0.445 0.555 6 C 0.377 3.623 7 C -0.085 4.085 8 N -0.519 5.519 9 C 0.597 3.403 10 N -0.644 5.644 11 C 0.503 3.497 12 O -0.502 6.502 13 C -0.120 4.120 14 S -0.077 6.077 15 C -0.527 4.527 16 H 0.071 0.929 17 C 0.071 3.929 18 N -0.870 5.870 19 Si 0.917 3.083 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.273 1.273 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.192 -9.496 -27.292 28.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.027 3.973 3 N -0.223 5.223 4 N -0.230 5.230 5 H 0.293 0.707 6 C 0.102 3.898 7 C -0.144 4.144 8 N -0.254 5.254 9 C 0.239 3.761 10 N -0.407 5.407 11 C 0.287 3.713 12 O -0.374 6.374 13 C -0.271 4.271 14 S 0.150 5.850 15 C -0.676 4.676 16 H 0.089 0.911 17 C -0.137 4.137 18 N -0.506 5.506 19 Si 0.743 3.257 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.197 1.197 23 H 0.094 0.906 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.131 0.869 27 H 0.102 0.898 28 H 0.121 0.879 29 H 0.130 0.870 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.734 -8.016 -26.518 27.713 hybrid contribution -0.807 -2.106 0.263 2.271 sum -1.541 -10.122 -26.255 28.181 Atomic orbital electron populations 1.22252 0.94371 1.03233 1.03430 1.21795 0.95222 0.75589 1.04683 1.48017 1.64886 1.11650 0.97727 1.45125 1.63433 1.10732 1.03683 0.70718 1.24459 0.87941 0.85208 0.92214 1.20650 1.03484 0.92514 0.97761 1.72189 1.25666 1.21207 1.06340 1.21126 0.85122 0.81219 0.88659 1.69414 1.39503 1.38018 0.93799 1.20663 0.77000 0.84244 0.89393 1.90767 1.38434 1.23636 1.84575 1.23157 1.04354 1.05362 0.94226 1.85246 1.86330 1.14899 0.98515 1.22900 1.50369 1.02064 0.92243 0.91062 1.24974 0.95001 0.94744 0.98986 1.70046 1.43505 1.07928 1.29142 0.86200 0.78684 0.78607 0.82187 1.20401 1.20899 1.19739 0.90594 0.92698 0.90234 0.86924 0.89761 0.87941 0.87035 0.89392 0.89718 0.89710 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.24 37.16 0.38 -0.86 16 2 C 0.15 1.09 7.20 -4.04 -0.03 1.06 16 3 N -0.41 -4.54 3.72 -62.09 -0.23 -4.78 16 4 N -0.50 -3.51 7.36 32.72 0.24 -3.27 16 5 H 0.45 0.86 8.96 -182.29 -1.63 -0.77 16 6 C 0.38 3.69 8.17 -155.18 -1.27 2.42 16 7 C -0.08 -0.38 10.51 36.00 0.38 -0.01 16 8 N -0.52 -8.83 9.18 -11.07 -0.10 -8.93 16 9 C 0.60 10.31 8.39 -321.65 -2.70 7.61 16 10 N -0.64 -13.34 10.42 -13.32 -0.14 -13.48 16 11 C 0.50 12.47 7.73 -11.77 -0.09 12.38 16 12 O -0.50 -13.81 14.38 5.31 0.08 -13.73 16 13 C -0.12 -3.06 6.23 36.01 0.22 -2.84 16 14 S -0.08 -2.35 20.57 -107.50 -2.21 -4.56 16 15 C -0.53 -16.48 9.50 30.94 0.29 -16.18 16 16 H 0.07 2.13 7.80 -52.49 -0.41 1.72 16 17 C 0.07 2.19 5.49 -17.43 -0.10 2.09 16 18 N -0.87 -27.96 13.22 55.49 0.73 -27.22 16 19 Si 0.92 22.88 29.55 -169.99 -5.02 17.85 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.08 2.06 8.14 -51.92 -0.42 1.64 16 32 H 0.08 2.06 8.14 -51.91 -0.42 1.64 16 33 H 0.27 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 309.68 15.07 4.67 4.67 Total: -1.00 -44.30 309.68 -10.30 -54.60 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: -5.41 Total: -6.82 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -2.91 Total: 5.68 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.50 Total: -57.68 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.08 Total: -13.73 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Atomic # 16 Polarization: -2.35 SS G_CDS: -2.21 Total: -4.56 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -44.30 -10.30 -54.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912167786.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.114 kcal (2) G-P(sol) polarization free energy of solvation -44.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds