Wall clock time and date at job start Mon Mar 30 2020 01:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 N 1.40513 * 127.02381 * 265.02656 * 3 2 1 5 5 H 0.96996 * 126.60992 * 359.95976 * 4 3 2 6 6 C 1.35021 * 106.77438 * 179.97438 * 4 3 2 7 7 C 1.50695 * 125.32211 * 180.02562 * 6 4 3 8 8 N 1.30814 * 109.35262 * 359.97438 * 6 4 3 9 9 C 1.34148 * 110.10812 * 359.76677 * 8 6 4 10 10 N 1.33133 * 126.09930 * 180.24124 * 9 8 6 11 11 C 1.33005 * 119.99965 * 0.16358 * 10 9 8 12 12 O 1.21568 * 119.99745 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00062 * 180.02562 * 11 10 9 14 14 S 1.81002 * 109.47138 * 179.97438 * 13 11 10 15 15 C 1.76197 * 99.99960 * 179.97438 * 14 13 11 16 16 H 1.07996 * 119.99908 * 0.02562 * 15 14 13 17 17 C 1.38795 * 119.99813 * 179.97438 * 15 14 13 18 18 N 1.31634 * 120.00397 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00123 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47062 * 90.00254 * 19 17 15 21 21 H 1.48501 * 109.47444 * 210.00359 * 19 17 15 22 22 H 1.48497 * 109.46994 * 330.00475 * 19 17 15 23 23 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 28 28 H 1.09006 * 109.46841 * 90.00033 * 7 6 4 29 29 H 1.08999 * 109.47311 * 209.99954 * 7 6 4 30 30 H 1.09001 * 109.47161 * 330.00194 * 7 6 4 31 31 H 1.08997 * 109.46772 * 299.99589 * 13 11 10 32 32 H 1.09001 * 109.47277 * 59.99865 * 13 11 10 33 33 H 0.96996 * 120.00238 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3920 2.1465 -1.1176 5 1 2.3774 1.8618 -2.0447 6 6 2.7754 3.3546 -0.6521 7 6 3.2586 4.5021 -1.5010 8 7 2.6608 3.3733 0.6509 9 6 2.1977 2.1935 1.0902 10 7 1.9583 1.8679 2.3587 11 6 2.1767 2.7548 3.3255 12 8 2.5954 3.8626 3.0508 13 6 1.9062 2.3862 4.7615 14 16 2.2991 3.7933 5.8299 15 6 1.9013 3.1043 7.4020 16 1 1.5364 2.0901 7.4703 17 6 2.0579 3.8645 8.5526 18 7 2.5032 5.1004 8.4694 19 14 1.6356 3.1343 10.2193 20 1 2.8377 2.4750 10.7899 21 1 1.1828 4.2142 11.1326 22 1 0.5504 2.1330 10.0604 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.4096 5.1195 -1.7945 29 1 3.9654 5.1041 -0.9299 30 1 3.7502 4.1128 -2.3925 31 1 0.8546 2.1240 4.8773 32 1 2.5260 1.5341 5.0408 33 1 2.6123 5.6318 9.2735 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912167786.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:58 Heat of formation + Delta-G solvation = 57.888156 kcal Electronic energy + Delta-G solvation = -17808.339261 eV Core-core repulsion = 14804.787843 eV Total energy + Delta-G solvation = -3003.551417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.35024 -39.97526 -36.42594 -35.19094 -34.56678 -32.63284 -32.20919 -30.52483 -29.09348 -27.66226 -24.91910 -23.24869 -22.64521 -20.56696 -19.68351 -18.95102 -17.57213 -17.44757 -17.08494 -16.86922 -15.97506 -15.92783 -15.55885 -15.29896 -14.76726 -14.45830 -14.42664 -13.68277 -13.43549 -13.24362 -13.16330 -13.02071 -12.86458 -12.58184 -12.32794 -12.07478 -11.70218 -11.55128 -11.35569 -11.12268 -11.09769 -10.28596 -10.04264 -9.13336 -8.64043 -8.31925 -6.10857 -0.20922 0.08086 1.31176 1.42933 1.43800 1.50481 1.65656 2.30574 2.42467 2.74799 3.00691 3.15051 3.23900 3.54141 3.73670 3.90020 4.03230 4.32574 4.42772 4.48406 4.50678 4.61757 4.68056 4.68996 4.88795 5.01256 5.11679 5.22521 5.42306 5.61225 6.22239 6.26159 6.39187 6.95037 7.07401 7.70109 8.78126 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032258 B = 0.003936 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.781972 B = 7111.762746 C = 7881.255964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.136 3.864 3 N -0.398 5.398 4 N -0.459 5.459 5 H 0.475 0.525 6 C 0.391 3.609 7 C -0.083 4.083 8 N -0.594 5.594 9 C 0.584 3.416 10 N -0.670 5.670 11 C 0.499 3.501 12 O -0.555 6.555 13 C -0.094 4.094 14 S -0.156 6.156 15 C -0.549 4.549 16 H 0.077 0.923 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 1.004 2.996 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.260 1.260 23 H 0.035 0.965 24 H 0.067 0.933 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.138 0.862 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.583 -11.582 -30.072 32.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.018 3.982 3 N -0.202 5.202 4 N -0.187 5.187 5 H 0.329 0.671 6 C 0.117 3.883 7 C -0.141 4.141 8 N -0.331 5.331 9 C 0.224 3.776 10 N -0.439 5.439 11 C 0.283 3.717 12 O -0.431 6.431 13 C -0.246 4.246 14 S 0.071 5.929 15 C -0.696 4.696 16 H 0.095 0.905 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.825 3.175 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.184 1.184 23 H 0.054 0.946 24 H 0.086 0.914 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.155 0.845 28 H 0.141 0.859 29 H 0.115 0.885 30 H 0.156 0.844 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.131 -10.180 -29.521 31.247 hybrid contribution -0.676 -1.535 0.679 1.810 sum -1.808 -11.715 -28.842 31.183 Atomic orbital electron populations 1.22204 0.93860 1.04544 1.02034 1.22258 0.95577 0.73600 1.06763 1.48395 1.61970 1.12233 0.97582 1.45279 1.60099 1.09385 1.03975 0.67053 1.25382 0.85531 0.86654 0.90746 1.20987 1.04112 0.90812 0.98207 1.72092 1.28652 1.22168 1.10188 1.21162 0.84858 0.82553 0.89034 1.69171 1.42891 1.36875 0.94921 1.20531 0.77059 0.84360 0.89748 1.90720 1.42096 1.25403 1.84882 1.22951 1.04528 1.02547 0.94532 1.85358 1.87065 1.19501 1.00993 1.23200 1.51444 1.02556 0.92447 0.90519 1.26194 0.94095 0.95025 1.03825 1.70207 1.44115 1.09639 1.30861 0.84887 0.79009 0.78045 0.75553 1.19018 1.19686 1.18419 0.94581 0.91389 0.87601 0.88140 0.84453 0.85902 0.88504 0.84368 0.89209 0.89126 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.24 71.98 0.74 -1.26 16 2 C 0.14 1.61 7.20 86.38 0.62 2.23 16 3 N -0.40 -7.84 3.72 -350.36 -1.30 -9.15 16 4 N -0.46 -4.61 7.36 -50.40 -0.37 -4.98 16 5 H 0.47 -0.98 8.96 -213.06 -1.91 -2.89 16 6 C 0.39 6.75 8.17 138.04 1.13 7.88 16 7 C -0.08 -0.47 10.51 71.23 0.75 0.28 16 8 N -0.59 -20.47 9.18 -188.95 -1.73 -22.20 16 9 C 0.58 20.42 8.39 261.08 2.19 22.61 16 10 N -0.67 -29.09 10.42 -315.30 -3.29 -32.37 16 11 C 0.50 26.36 7.73 87.93 0.68 27.04 16 12 O -0.55 -32.73 14.38 -3.93 -0.06 -32.79 16 13 C -0.09 -5.09 6.23 71.24 0.44 -4.65 16 14 S -0.16 -10.14 20.57 -56.49 -1.16 -11.30 16 15 C -0.55 -35.38 9.50 67.95 0.65 -34.74 16 16 H 0.08 4.69 7.80 -2.91 -0.02 4.66 16 17 C 0.01 0.81 5.49 84.86 0.47 1.27 16 18 N -0.91 -60.16 13.22 21.65 0.29 -59.87 16 19 Si 1.00 47.32 29.55 68.60 2.03 49.35 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 23 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.14 -0.57 8.14 -2.39 -0.02 -0.59 16 31 H 0.09 4.62 8.14 -2.40 -0.02 4.60 16 32 H 0.09 4.65 8.14 -2.39 -0.02 4.63 16 33 H 0.27 16.46 8.31 -92.71 -0.77 15.69 16 Total: -1.00 -106.35 309.68 1.28 -105.06 By element: Atomic # 1 Polarization: -1.64 SS G_CDS: -0.78 Total: -2.42 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 7.66 Total: 20.67 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -6.41 Total: -128.57 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.06 Total: -32.79 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Atomic # 16 Polarization: -10.14 SS G_CDS: -1.16 Total: -11.30 kcal Total: -106.35 1.28 -105.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912167786.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.950 kcal (2) G-P(sol) polarization free energy of solvation -106.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds