Wall clock time and date at job start Mon Mar 30 2020 00:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00078 * 2 1 4 4 H 1.48507 * 109.46955 * 269.99913 * 3 2 1 5 5 H 1.48495 * 109.47269 * 29.99528 * 3 2 1 6 6 H 1.48497 * 109.47026 * 150.00168 * 3 2 1 7 7 C 1.37871 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00215 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47244 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46978 * 180.02562 * 10 9 7 12 12 O 1.45201 * 109.47234 * 180.02562 * 11 10 9 13 13 C 1.34741 * 117.00084 * 179.97438 * 12 11 10 14 14 O 1.21503 * 120.00227 * 359.97438 * 13 12 11 15 15 C 1.47411 * 119.99980 * 180.02562 * 13 12 11 16 16 C 1.39965 * 120.19144 * 269.99766 * 15 13 12 17 17 F 1.35102 * 120.10097 * 359.70263 * 16 15 13 18 18 C 1.38204 * 119.79972 * 179.97438 * 16 15 13 19 19 C 1.38311 * 120.19816 * 0.02562 * 18 16 15 20 20 C 1.38321 * 120.39646 * 359.95513 * 19 18 16 21 21 C 1.38211 * 120.19175 * 0.04583 * 20 19 18 22 22 F 1.35095 * 120.09585 * 179.97438 * 21 20 19 23 23 H 0.97006 * 120.00039 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46683 * 59.99996 * 9 7 2 25 25 H 1.08999 * 109.47003 * 300.00431 * 9 7 2 26 26 H 1.08991 * 109.46972 * 60.00181 * 10 9 7 27 27 H 1.09000 * 109.46929 * 299.99994 * 10 9 7 28 28 H 1.08998 * 109.47200 * 59.99796 * 11 10 9 29 29 H 1.09000 * 109.46901 * 299.99540 * 11 10 9 30 30 H 1.07999 * 119.90391 * 179.97438 * 18 16 15 31 31 H 1.08001 * 119.80578 * 180.02562 * 19 18 16 32 32 H 1.07992 * 119.90569 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0033 12 8 2.4237 -6.0908 0.0049 13 6 1.9086 -7.3358 0.0061 14 8 0.7041 -7.4950 0.0063 15 6 2.8065 -8.5049 0.0083 16 6 3.2362 -9.0647 -1.2004 17 9 2.8245 -8.5390 -2.3749 18 6 4.0785 -10.1604 -1.1889 19 6 4.4963 -10.7040 0.0123 20 6 4.0770 -10.1571 1.2116 21 6 3.2347 -9.0613 1.2190 22 9 2.8260 -8.5290 2.3915 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5574 -0.8880 25 1 0.6246 -2.5562 0.8919 26 1 2.8718 -3.6035 0.8926 27 1 2.8718 -3.6051 -0.8873 28 1 0.8538 -5.0453 -0.8868 29 1 0.8533 -5.0442 0.8931 30 1 4.4107 -10.5939 -2.1206 31 1 5.1549 -11.5601 0.0139 32 1 4.4085 -10.5877 2.1448 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912956762.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:54 Heat of formation + Delta-G solvation = -162.160811 kcal Electronic energy + Delta-G solvation = -19541.196353 eV Core-core repulsion = 15909.677008 eV Total energy + Delta-G solvation = -3631.519345 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.44503 -49.42144 -40.39513 -38.90609 -36.50918 -34.01127 -32.13492 -31.49417 -30.88634 -27.23253 -25.02506 -23.34249 -23.15947 -21.23631 -20.36606 -18.71493 -17.96298 -17.82184 -17.08073 -16.35476 -16.15963 -16.08828 -15.95152 -15.70159 -15.42907 -14.82551 -14.47042 -13.95768 -13.47441 -13.24509 -12.52431 -12.48056 -12.41665 -12.16823 -12.08636 -11.90543 -10.97720 -10.81663 -10.66606 -10.52451 -10.44363 -9.74216 -9.62084 -9.50857 -9.27985 -9.16494 -8.38427 -6.03107 -4.06239 0.25050 0.45969 1.95272 2.54443 2.85285 3.26716 3.31674 3.37713 3.41396 3.85595 4.13176 4.28837 4.41815 4.52659 4.59830 5.14110 5.21083 5.32852 5.36203 5.44365 5.54515 5.56458 5.59712 5.96929 6.14242 6.33988 6.52353 6.75367 6.96241 7.59983 7.66913 7.70915 7.94983 8.35843 8.99833 9.58036 11.08359 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032941 B = 0.003372 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.795865 B = 8301.393614 C = 8455.954843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.066 3.934 12 O -0.344 6.344 13 C 0.511 3.489 14 O -0.485 6.485 15 C -0.175 4.175 16 C 0.171 3.829 17 F -0.118 7.118 18 C -0.165 4.165 19 C -0.042 4.042 20 C -0.165 4.165 21 C 0.171 3.829 22 F -0.118 7.118 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.112 -24.076 0.030 26.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.007 4.007 12 O -0.260 6.260 13 C 0.352 3.648 14 O -0.373 6.373 15 C -0.178 4.178 16 C 0.151 3.849 17 F -0.096 7.096 18 C -0.183 4.183 19 C -0.060 4.060 20 C -0.183 4.183 21 C 0.151 3.849 22 F -0.096 7.096 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.171 0.829 31 H 0.169 0.831 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.536 -23.891 0.036 25.724 hybrid contribution 0.031 1.220 -0.011 1.221 sum 9.567 -22.671 0.024 24.607 Atomic orbital electron populations 1.69967 1.06093 1.26778 1.50509 1.25031 0.94886 0.99378 0.95178 0.86534 0.79805 0.83182 0.78140 1.20600 1.21184 1.19794 1.21166 0.93139 0.90638 1.51053 0.92398 1.19059 0.93818 0.90655 0.97769 1.21789 1.00009 0.90702 1.02138 1.23663 0.91252 0.83249 1.02529 1.86653 1.42492 1.14393 1.82443 1.20524 0.86846 0.83905 0.73540 1.90891 1.15455 1.86908 1.43998 1.19229 1.05954 0.99290 0.93340 1.17292 0.94835 0.93206 0.79588 1.91608 1.88221 1.85487 1.44263 1.21186 0.99914 0.96364 1.00873 1.21047 0.96437 0.98324 0.90216 1.21190 0.99873 0.96380 1.00895 1.17291 0.94854 0.93152 0.79623 1.91606 1.88323 1.85213 1.44435 0.92876 0.96146 0.96148 0.91993 0.92003 0.91103 0.91114 0.82945 0.83084 0.82945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.11 -2.33 5.53 -26.73 -0.15 -2.48 16 11 C 0.07 1.28 5.48 37.16 0.20 1.48 16 12 O -0.34 -6.35 10.23 -40.60 -0.42 -6.76 16 13 C 0.51 8.91 6.68 34.46 0.23 9.14 16 14 O -0.49 -9.60 16.90 -19.27 -0.33 -9.93 16 15 C -0.18 -2.36 5.76 -104.87 -0.60 -2.96 16 16 C 0.17 1.92 7.29 -38.95 -0.28 1.63 16 17 F -0.12 -1.52 16.83 2.25 0.04 -1.48 16 18 C -0.16 -1.15 10.01 -39.57 -0.40 -1.54 16 19 C -0.04 -0.22 10.03 -39.52 -0.40 -0.61 16 20 C -0.16 -1.15 10.01 -39.56 -0.40 -1.54 16 21 C 0.17 1.92 7.29 -38.95 -0.28 1.63 16 22 F -0.12 -1.52 16.83 2.25 0.04 -1.48 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.15 0.65 8.06 -52.49 -0.42 0.22 16 31 H 0.15 0.22 8.06 -52.49 -0.42 -0.20 16 32 H 0.15 0.65 8.06 -52.49 -0.42 0.22 16 LS Contribution 301.63 15.07 4.55 4.55 Total: -1.00 -33.14 301.63 -6.37 -39.51 By element: Atomic # 1 Polarization: -3.03 SS G_CDS: -3.35 Total: -6.37 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -2.62 Total: -8.42 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.74 Total: -16.69 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.08 Total: -2.97 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.14 -6.37 -39.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912956762.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.647 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds