Wall clock time and date at job start Mon Mar 30 2020 00:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00078 * 2 1 4 4 H 1.48507 * 109.46955 * 269.99913 * 3 2 1 5 5 H 1.48495 * 109.47269 * 29.99528 * 3 2 1 6 6 H 1.48497 * 109.47026 * 150.00168 * 3 2 1 7 7 C 1.37871 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00215 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47244 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46978 * 180.02562 * 10 9 7 12 12 O 1.45201 * 109.47234 * 180.02562 * 11 10 9 13 13 C 1.34741 * 117.00084 * 179.97438 * 12 11 10 14 14 O 1.21503 * 120.00227 * 359.97438 * 13 12 11 15 15 C 1.47411 * 119.99980 * 180.02562 * 13 12 11 16 16 C 1.39965 * 120.19144 * 269.99766 * 15 13 12 17 17 F 1.35102 * 120.10097 * 359.70263 * 16 15 13 18 18 C 1.38204 * 119.79972 * 179.97438 * 16 15 13 19 19 C 1.38311 * 120.19816 * 0.02562 * 18 16 15 20 20 C 1.38321 * 120.39646 * 359.95513 * 19 18 16 21 21 C 1.38211 * 120.19175 * 0.04583 * 20 19 18 22 22 F 1.35095 * 120.09585 * 179.97438 * 21 20 19 23 23 H 0.97006 * 120.00039 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46683 * 59.99996 * 9 7 2 25 25 H 1.08999 * 109.47003 * 300.00431 * 9 7 2 26 26 H 1.08991 * 109.46972 * 60.00181 * 10 9 7 27 27 H 1.09000 * 109.46929 * 299.99994 * 10 9 7 28 28 H 1.08998 * 109.47200 * 59.99796 * 11 10 9 29 29 H 1.09000 * 109.46901 * 299.99540 * 11 10 9 30 30 H 1.07999 * 119.90391 * 179.97438 * 18 16 15 31 31 H 1.08001 * 119.80578 * 180.02562 * 19 18 16 32 32 H 1.07992 * 119.90569 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0033 12 8 2.4237 -6.0908 0.0049 13 6 1.9086 -7.3358 0.0061 14 8 0.7041 -7.4950 0.0063 15 6 2.8065 -8.5049 0.0083 16 6 3.2362 -9.0647 -1.2004 17 9 2.8245 -8.5390 -2.3749 18 6 4.0785 -10.1604 -1.1889 19 6 4.4963 -10.7040 0.0123 20 6 4.0770 -10.1571 1.2116 21 6 3.2347 -9.0613 1.2190 22 9 2.8260 -8.5290 2.3915 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5574 -0.8880 25 1 0.6246 -2.5562 0.8919 26 1 2.8718 -3.6035 0.8926 27 1 2.8718 -3.6051 -0.8873 28 1 0.8538 -5.0453 -0.8868 29 1 0.8533 -5.0442 0.8931 30 1 4.4107 -10.5939 -2.1206 31 1 5.1549 -11.5601 0.0139 32 1 4.4085 -10.5877 2.1448 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912956762.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:53 Heat of formation + Delta-G solvation = -181.408324 kcal Electronic energy + Delta-G solvation = -19542.030988 eV Core-core repulsion = 15909.677008 eV Total energy + Delta-G solvation = -3632.353980 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.31751 -50.29176 -41.75499 -39.67537 -38.02247 -36.01666 -33.82394 -32.67034 -31.53497 -29.13875 -26.25473 -24.84978 -24.04621 -22.44960 -22.24787 -19.67117 -19.09865 -18.72725 -18.67638 -18.03323 -17.48238 -17.15527 -16.87101 -16.59254 -16.51608 -16.17523 -15.63772 -15.58758 -14.93112 -14.20642 -14.05627 -13.91562 -13.87827 -13.20252 -13.12281 -13.00720 -12.86174 -12.57216 -12.49836 -12.22345 -12.07265 -11.55798 -11.55379 -11.29705 -10.60120 -10.34394 -9.95725 -8.24237 -6.36426 -0.48745 -0.19012 0.60635 1.31728 1.40682 1.42099 1.53691 2.19136 2.39540 2.50753 3.09541 3.16759 3.20950 3.59476 3.65807 3.86527 3.90380 4.07435 4.26232 4.45024 4.52098 4.69551 4.71547 4.82890 4.93830 4.97540 5.06803 5.13851 5.43020 5.56907 5.57107 5.75762 6.13803 6.25609 6.78691 7.33230 8.88142 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032941 B = 0.003372 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.795865 B = 8301.393614 C = 8455.954843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.027 3.973 10 C -0.093 4.093 11 C 0.073 3.927 12 O -0.348 6.348 13 C 0.509 3.491 14 O -0.520 6.520 15 C -0.212 4.212 16 C 0.145 3.855 17 F -0.137 7.137 18 C -0.146 4.146 19 C -0.015 4.015 20 C -0.146 4.146 21 C 0.145 3.855 22 F -0.137 7.137 23 H 0.265 0.735 24 H -0.002 1.002 25 H -0.002 1.002 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.187 0.813 31 H 0.207 0.793 32 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.187 -26.130 0.028 29.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.010 4.010 10 C -0.130 4.130 11 C 0.000 4.000 12 O -0.264 6.264 13 C 0.353 3.647 14 O -0.409 6.409 15 C -0.215 4.215 16 C 0.125 3.875 17 F -0.116 7.116 18 C -0.164 4.164 19 C -0.032 4.032 20 C -0.164 4.164 21 C 0.125 3.875 22 F -0.116 7.116 23 H 0.074 0.926 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.204 0.796 31 H 0.224 0.776 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 12.630 -25.966 0.032 28.875 hybrid contribution -0.888 1.707 -0.011 1.924 sum 11.742 -24.259 0.021 26.952 Atomic orbital electron populations 1.70105 1.07927 1.28027 1.51289 1.26037 0.95824 1.03618 0.94453 0.85347 0.78614 0.77895 0.78591 1.19627 1.20698 1.18510 1.21602 0.93767 0.91766 1.51164 0.91625 1.18934 0.94188 0.92332 0.95594 1.21485 0.98858 0.89986 1.02716 1.23338 0.91047 0.83381 1.02235 1.86639 1.42060 1.14945 1.82711 1.21380 0.87307 0.84221 0.71842 1.90849 1.17232 1.87233 1.45625 1.19264 1.07945 0.98729 0.95602 1.17730 0.96634 0.94973 0.78180 1.91553 1.88782 1.86123 1.45114 1.21686 0.97365 0.93997 1.03341 1.21737 0.94832 0.98321 0.88326 1.21690 0.97324 0.94010 1.03365 1.17730 0.96660 0.94915 0.78214 1.91551 1.88881 1.85857 1.45283 0.92601 0.98359 0.98362 0.91333 0.91319 0.91472 0.91492 0.79552 0.77621 0.79554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.44 0.28 -57.44 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.55 -31.58 9.11 25.60 0.23 -31.35 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.03 1.46 4.97 29.85 0.15 1.60 16 10 C -0.09 -4.10 5.53 30.59 0.17 -3.93 16 11 C 0.07 3.00 5.48 71.98 0.39 3.40 16 12 O -0.35 -13.44 10.23 -56.51 -0.58 -14.02 16 13 C 0.51 18.77 6.68 70.24 0.47 19.24 16 14 O -0.52 -21.96 16.90 19.83 0.34 -21.62 16 15 C -0.21 -5.82 5.76 -20.03 -0.12 -5.93 16 16 C 0.14 3.13 7.29 22.68 0.17 3.30 16 17 F -0.14 -3.62 16.83 44.97 0.76 -2.87 16 18 C -0.15 -1.45 10.01 22.28 0.22 -1.23 16 19 C -0.01 -0.07 10.03 22.31 0.22 0.15 16 20 C -0.15 -1.45 10.01 22.28 0.22 -1.23 16 21 C 0.14 3.13 7.29 22.68 0.17 3.30 16 22 F -0.14 -3.62 16.83 44.97 0.76 -2.87 16 23 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 24 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 25 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 27 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 31 H 0.21 -1.13 8.06 -2.91 -0.02 -1.15 16 32 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 Total: -1.00 -76.64 301.63 7.48 -69.15 By element: Atomic # 1 Polarization: -5.85 SS G_CDS: 1.14 Total: -4.71 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 2.76 Total: -12.30 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.28 Total: -57.44 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.24 Total: -35.64 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 1.51 Total: -5.73 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -76.64 7.48 -69.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912956762.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.257 kcal (2) G-P(sol) polarization free energy of solvation -76.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds