Wall clock time and date at job start Mon Mar 30 2020 00:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48495 * 109.46931 * 270.00289 * 3 2 1 5 5 H 1.48500 * 109.46738 * 30.00531 * 3 2 1 6 6 H 1.48501 * 109.46755 * 150.00275 * 3 2 1 7 7 C 1.37879 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46867 * 180.02562 * 11 10 9 13 13 C 1.34727 * 116.99511 * 179.97438 * 12 11 10 14 14 O 1.21489 * 120.00646 * 359.97438 * 13 12 11 15 15 C 1.47605 * 119.99875 * 179.97438 * 13 12 11 16 16 C 1.39709 * 120.11399 * 179.97438 * 15 13 12 17 17 C 1.37833 * 119.91779 * 179.97438 * 16 15 13 18 18 C 1.38619 * 120.15449 * 0.02562 * 17 16 15 19 19 F 1.35098 * 119.88162 * 180.02562 * 18 17 16 20 20 C 1.38846 * 120.22959 * 0.02562 * 18 17 16 21 21 F 1.35097 * 119.95978 * 179.97438 * 20 18 17 22 22 C 1.38039 * 120.07575 * 359.69937 * 20 18 17 23 23 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 25 25 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 26 26 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 27 27 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 28 28 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 29 29 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 30 30 H 1.08001 * 120.03923 * 0.02562 * 16 15 13 31 31 H 1.08006 * 119.92067 * 179.97438 * 17 16 15 32 32 H 1.08002 * 120.07632 * 180.28040 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 8 2.4236 -6.0908 -0.0006 13 6 1.9086 -7.3357 -0.0005 14 8 0.7042 -7.4950 -0.0004 15 6 2.8077 -8.5063 -0.0004 16 6 2.2762 -9.7984 0.0002 17 6 3.1195 -10.8886 -0.0003 18 6 4.4936 -10.7061 -0.0009 19 9 5.3151 -11.7786 -0.0019 20 6 5.0286 -9.4248 -0.0005 21 9 6.3686 -9.2532 -0.0005 22 6 4.1928 -8.3262 -0.0057 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6245 -2.5571 0.8896 26 1 2.8717 -3.6045 0.8895 27 1 2.8718 -3.6044 -0.8905 28 1 0.8531 -5.0451 0.8886 29 1 0.8537 -5.0446 -0.8913 30 1 1.2059 -9.9427 0.0002 31 1 2.7087 -11.8875 0.0006 32 1 4.6089 -7.3296 -0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912958572.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:17 Heat of formation + Delta-G solvation = -166.016393 kcal Electronic energy + Delta-G solvation = -19068.998304 eV Core-core repulsion = 15437.311768 eV Total energy + Delta-G solvation = -3631.686536 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.90836 -48.96724 -40.62481 -38.82938 -36.54138 -34.06182 -32.05274 -31.46386 -30.99648 -27.24319 -24.87300 -23.76481 -23.00099 -21.16614 -20.41180 -18.69985 -18.02256 -17.59154 -16.87055 -16.79120 -16.47556 -16.37094 -15.89525 -15.36623 -14.90469 -14.56820 -14.49643 -14.19838 -13.78392 -13.46174 -12.81343 -12.66296 -12.22687 -12.11858 -11.93791 -11.90989 -11.00658 -10.79949 -10.70405 -10.54421 -10.48535 -9.79442 -9.65332 -9.56558 -9.26990 -9.20332 -8.41696 -6.06540 -4.09747 -0.02218 0.49344 2.12741 2.59047 3.09962 3.23616 3.29333 3.35699 3.39067 3.81682 4.00825 4.28990 4.41258 4.51910 4.69565 5.11071 5.24742 5.29609 5.30327 5.44376 5.49827 5.52980 5.66763 5.93306 6.15222 6.33614 6.47469 6.72454 6.91958 7.56144 7.66648 7.69495 7.91513 8.32162 8.96489 9.54841 11.04893 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.036013 B = 0.002982 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.312679 B = 9386.224044 C =10137.787116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.110 4.110 11 C 0.069 3.931 12 O -0.351 6.351 13 C 0.506 3.494 14 O -0.500 6.500 15 C -0.101 4.101 16 C -0.037 4.037 17 C -0.137 4.137 18 C 0.098 3.902 19 F -0.123 7.123 20 C 0.057 3.943 21 F -0.123 7.123 22 C -0.068 4.068 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 -22.338 -0.004 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.004 4.004 12 O -0.268 6.268 13 C 0.349 3.651 14 O -0.390 6.390 15 C -0.102 4.102 16 C -0.056 4.056 17 C -0.156 4.156 18 C 0.077 3.923 19 F -0.101 7.101 20 C 0.037 3.963 21 F -0.101 7.101 22 C -0.087 4.087 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.175 0.825 31 H 0.174 0.826 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.820 -22.240 0.000 23.262 hybrid contribution 0.694 0.810 -0.011 1.067 sum 7.514 -21.430 -0.010 22.709 Atomic orbital electron populations 1.69963 1.06095 1.26814 1.50469 1.25030 0.94883 0.99390 0.95148 0.86541 0.79816 0.83193 0.78158 1.20598 1.21180 1.19787 1.21164 0.93134 0.90656 1.51116 0.92406 1.19051 0.93820 0.90691 0.97740 1.21792 1.00013 0.90835 1.02096 1.23610 0.91118 0.83144 1.02487 1.86539 1.42576 1.14677 1.82980 1.20773 0.86866 0.83875 0.73559 1.90859 1.15776 1.86957 1.45359 1.19122 0.92087 0.92265 1.06770 1.21251 1.01699 0.89436 0.93170 1.21041 0.89988 1.01320 1.03232 1.18017 0.88946 0.82216 1.03093 1.91562 1.71822 1.53272 1.93449 1.17502 0.78535 0.92471 1.07797 1.91574 1.28479 1.96021 1.94042 1.21501 0.92121 0.99569 0.95499 0.92857 0.96184 0.96179 0.92022 0.92033 0.91170 0.91161 0.82527 0.82584 0.81677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.11 -2.18 5.53 -26.73 -0.15 -2.33 16 11 C 0.07 1.20 5.48 37.16 0.20 1.40 16 12 O -0.35 -5.40 9.47 -40.57 -0.38 -5.78 16 13 C 0.51 7.10 7.89 34.55 0.27 7.37 16 14 O -0.50 -8.15 16.13 -19.26 -0.31 -8.46 16 15 C -0.10 -1.07 5.87 -104.99 -0.62 -1.69 16 16 C -0.04 -0.31 9.59 -39.18 -0.38 -0.68 16 17 C -0.14 -0.95 10.01 -39.59 -0.40 -1.35 16 18 C 0.10 0.86 7.31 -39.22 -0.29 0.57 16 19 F -0.12 -1.16 17.17 2.25 0.04 -1.12 16 20 C 0.06 0.56 7.30 -39.43 -0.29 0.27 16 21 F -0.12 -1.33 17.17 2.25 0.04 -1.29 16 22 C -0.07 -0.67 9.59 -39.12 -0.38 -1.04 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.16 1.15 7.65 -52.49 -0.40 0.75 16 31 H 0.16 0.65 8.06 -52.48 -0.42 0.22 16 32 H 0.17 1.54 7.61 -52.49 -0.40 1.14 16 LS Contribution 300.41 15.07 4.53 4.53 Total: -1.00 -30.57 300.41 -6.23 -36.80 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: -3.30 Total: -4.92 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.56 Total: -10.29 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.69 Total: -14.24 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.08 Total: -2.41 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.57 -6.23 -36.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958572.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.213 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds