Wall clock time and date at job start Mon Mar 30 2020 00:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99907 * 2 1 4 4 H 1.48500 * 109.47608 * 270.00037 * 3 2 1 5 5 H 1.48500 * 109.47185 * 30.00080 * 3 2 1 6 6 H 1.48503 * 109.47228 * 149.99908 * 3 2 1 7 7 C 1.37879 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99612 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99998 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46704 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46945 * 180.02562 * 10 9 7 12 12 O 1.45199 * 109.47429 * 179.97438 * 11 10 9 13 13 C 1.34709 * 117.00316 * 179.97438 * 12 11 10 14 14 O 1.21473 * 119.99634 * 0.02562 * 13 12 11 15 15 C 1.47738 * 120.00034 * 179.97438 * 13 12 11 16 16 C 1.39605 * 120.12225 * 180.02562 * 15 13 12 17 17 C 1.38189 * 119.86877 * 179.97438 * 16 15 13 18 18 F 1.35102 * 119.93626 * 179.97438 * 17 16 15 19 19 C 1.38539 * 120.12778 * 359.97438 * 17 16 15 20 20 C 1.38535 * 120.25354 * 0.02562 * 19 17 16 21 21 F 1.35108 * 119.93569 * 179.97438 * 20 19 17 22 22 C 1.38193 * 120.12999 * 359.97438 * 20 19 17 23 23 H 0.97001 * 120.00334 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46826 * 59.99777 * 9 7 2 25 25 H 1.08995 * 109.47194 * 299.99359 * 9 7 2 26 26 H 1.08997 * 109.47564 * 60.00165 * 10 9 7 27 27 H 1.09008 * 109.47260 * 299.99709 * 10 9 7 28 28 H 1.09000 * 109.47506 * 59.99710 * 11 10 9 29 29 H 1.09000 * 109.46911 * 300.00120 * 11 10 9 30 30 H 1.07997 * 120.06855 * 359.70007 * 16 15 13 31 31 H 1.08005 * 119.87585 * 179.97438 * 19 17 16 32 32 H 1.08001 * 120.06681 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5515 -2.6365 0.0012 12 8 6.0356 -4.0054 0.0017 13 6 7.3711 -4.1819 0.0022 14 8 8.1110 -3.2185 0.0028 15 6 7.9358 -5.5471 0.0033 16 6 9.3194 -5.7330 0.0044 17 6 9.8420 -7.0122 0.0060 18 9 11.1807 -7.1937 0.0065 19 6 8.9956 -8.1091 0.0070 20 6 7.6218 -7.9306 0.0059 21 9 6.8024 -9.0049 0.0063 22 6 7.0879 -6.6560 0.0043 23 1 -0.4851 0.8400 0.0004 24 1 3.8745 -0.6806 0.8906 25 1 3.8753 -0.6796 -0.8895 26 1 3.6587 -3.1502 -0.8903 27 1 3.6579 -3.1505 0.8897 28 1 5.9142 -2.1229 0.8916 29 1 5.9156 -2.1223 -0.8883 30 1 9.9801 -4.8787 -0.0004 31 1 9.4084 -9.1071 0.0078 32 1 6.0167 -6.5181 0.0030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912958630.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:19 Heat of formation + Delta-G solvation = -162.222956 kcal Electronic energy + Delta-G solvation = -19084.087881 eV Core-core repulsion = 15452.565841 eV Total energy + Delta-G solvation = -3631.522040 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.48607 -49.43032 -40.70616 -38.83266 -36.66805 -34.16506 -32.15747 -31.65516 -30.88471 -27.78563 -25.28072 -23.39877 -22.92066 -21.28556 -20.34899 -18.84101 -17.89220 -17.06343 -16.89442 -16.78352 -16.67838 -16.31467 -16.08300 -15.93510 -15.75522 -14.76489 -14.35291 -14.27261 -13.48575 -13.20959 -12.78148 -12.70911 -12.48661 -12.33375 -12.24425 -11.98511 -11.13139 -11.04739 -10.86973 -10.54739 -10.09024 -9.89054 -9.78179 -9.69112 -9.31485 -9.29206 -8.60139 -6.10254 -4.09723 -0.04241 0.42575 2.07380 2.40830 3.02289 3.27356 3.34386 3.35415 3.37982 3.77218 4.10865 4.25036 4.39859 4.48081 4.50567 4.98451 5.20168 5.22759 5.35645 5.36282 5.37147 5.39698 5.58669 5.76844 6.13706 6.17758 6.31503 6.51958 6.71461 7.15216 7.26909 7.57226 7.70488 8.45813 8.93807 9.51008 11.02868 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034760 B = 0.003162 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.333732 B = 8854.093265 C = 9633.678183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.102 4.102 11 C 0.066 3.934 12 O -0.347 6.347 13 C 0.506 3.494 14 O -0.497 6.497 15 C -0.060 4.060 16 C -0.104 4.104 17 C 0.121 3.879 18 F -0.125 7.125 19 C -0.162 4.162 20 C 0.122 3.878 21 F -0.124 7.124 22 C -0.106 4.106 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.159 0.841 31 H 0.155 0.845 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.585 -15.978 0.029 25.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.140 4.140 11 C -0.006 4.006 12 O -0.263 6.263 13 C 0.350 3.650 14 O -0.387 6.387 15 C -0.062 4.062 16 C -0.123 4.123 17 C 0.102 3.898 18 F -0.103 7.103 19 C -0.181 4.181 20 C 0.103 3.897 21 F -0.102 7.102 22 C -0.125 4.125 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.033 0.967 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.176 0.824 31 H 0.173 0.827 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 19.616 -15.581 0.032 25.051 hybrid contribution 0.485 0.796 -0.020 0.933 sum 20.102 -14.785 0.012 24.953 Atomic orbital electron populations 1.69904 1.06299 1.27033 1.50712 1.25017 0.94757 0.99195 0.94422 0.86784 0.80367 0.83572 0.78613 1.20187 1.21263 1.18970 1.21043 0.88991 0.94691 1.51366 0.90771 1.19522 0.97585 0.90935 0.96740 1.21587 0.88430 1.00969 1.02989 1.23621 0.97233 0.77296 1.02478 1.86538 1.21881 1.34963 1.82950 1.20748 0.81908 0.88751 0.73619 1.90861 1.60734 1.41985 1.45075 1.18724 0.92470 0.90977 1.04014 1.21289 0.94773 0.97057 0.99145 1.16959 0.77704 0.92767 1.02376 1.91573 1.29054 1.96003 1.93717 1.21300 0.92108 1.00582 1.04146 1.17094 0.87160 0.83567 1.01917 1.91587 1.71622 1.53393 1.93613 1.21634 1.02718 0.89776 0.98367 0.92598 0.96229 0.96654 0.91386 0.91368 0.91136 0.91136 0.82365 0.82697 0.81892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.10 -1.92 5.53 -26.73 -0.15 -2.07 16 11 C 0.07 1.07 5.47 37.16 0.20 1.28 16 12 O -0.35 -5.08 9.47 -40.52 -0.38 -5.46 16 13 C 0.51 6.89 7.90 34.61 0.27 7.17 16 14 O -0.50 -7.90 16.13 -19.25 -0.31 -8.21 16 15 C -0.06 -0.63 5.87 -105.00 -0.62 -1.25 16 16 C -0.10 -0.96 9.57 -39.09 -0.37 -1.33 16 17 C 0.12 1.00 7.29 -39.49 -0.29 0.71 16 18 F -0.13 -1.07 17.26 2.25 0.04 -1.03 16 19 C -0.16 -1.18 10.00 -39.36 -0.39 -1.57 16 20 C 0.12 1.02 7.29 -39.49 -0.29 0.74 16 21 F -0.12 -1.11 17.26 2.25 0.04 -1.08 16 22 C -0.11 -0.98 9.59 -39.09 -0.38 -1.35 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 24 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 25 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.16 1.41 7.65 -52.49 -0.40 1.00 16 31 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 32 H 0.16 1.44 7.61 -52.49 -0.40 1.04 16 LS Contribution 296.94 15.07 4.47 4.47 Total: -1.00 -30.52 296.94 -5.85 -36.38 By element: Atomic # 1 Polarization: -0.71 SS G_CDS: -3.27 Total: -3.98 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -2.55 Total: -11.10 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.65 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.69 Total: -13.68 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.08 Total: -2.11 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.52 -5.85 -36.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958630.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.847 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds