Wall clock time and date at job start Mon Mar 30 2020 00:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99907 * 2 1 4 4 H 1.48500 * 109.47608 * 270.00037 * 3 2 1 5 5 H 1.48500 * 109.47185 * 30.00080 * 3 2 1 6 6 H 1.48503 * 109.47228 * 149.99908 * 3 2 1 7 7 C 1.37879 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99612 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99998 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46704 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46945 * 180.02562 * 10 9 7 12 12 O 1.45199 * 109.47429 * 179.97438 * 11 10 9 13 13 C 1.34709 * 117.00316 * 179.97438 * 12 11 10 14 14 O 1.21473 * 119.99634 * 0.02562 * 13 12 11 15 15 C 1.47738 * 120.00034 * 179.97438 * 13 12 11 16 16 C 1.39605 * 120.12225 * 180.02562 * 15 13 12 17 17 C 1.38189 * 119.86877 * 179.97438 * 16 15 13 18 18 F 1.35102 * 119.93626 * 179.97438 * 17 16 15 19 19 C 1.38539 * 120.12778 * 359.97438 * 17 16 15 20 20 C 1.38535 * 120.25354 * 0.02562 * 19 17 16 21 21 F 1.35108 * 119.93569 * 179.97438 * 20 19 17 22 22 C 1.38193 * 120.12999 * 359.97438 * 20 19 17 23 23 H 0.97001 * 120.00334 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46826 * 59.99777 * 9 7 2 25 25 H 1.08995 * 109.47194 * 299.99359 * 9 7 2 26 26 H 1.08997 * 109.47564 * 60.00165 * 10 9 7 27 27 H 1.09008 * 109.47260 * 299.99709 * 10 9 7 28 28 H 1.09000 * 109.47506 * 59.99710 * 11 10 9 29 29 H 1.09000 * 109.46911 * 300.00120 * 11 10 9 30 30 H 1.07997 * 120.06855 * 359.70007 * 16 15 13 31 31 H 1.08005 * 119.87585 * 179.97438 * 19 17 16 32 32 H 1.08001 * 120.06681 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5515 -2.6365 0.0012 12 8 6.0356 -4.0054 0.0017 13 6 7.3711 -4.1819 0.0022 14 8 8.1110 -3.2185 0.0028 15 6 7.9358 -5.5471 0.0033 16 6 9.3194 -5.7330 0.0044 17 6 9.8420 -7.0122 0.0060 18 9 11.1807 -7.1937 0.0065 19 6 8.9956 -8.1091 0.0070 20 6 7.6218 -7.9306 0.0059 21 9 6.8024 -9.0049 0.0063 22 6 7.0879 -6.6560 0.0043 23 1 -0.4851 0.8400 0.0004 24 1 3.8745 -0.6806 0.8906 25 1 3.8753 -0.6796 -0.8895 26 1 3.6587 -3.1502 -0.8903 27 1 3.6579 -3.1505 0.8897 28 1 5.9142 -2.1229 0.8916 29 1 5.9156 -2.1223 -0.8883 30 1 9.9801 -4.8787 -0.0004 31 1 9.4084 -9.1071 0.0078 32 1 6.0167 -6.5181 0.0030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912958630.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:19 Heat of formation + Delta-G solvation = -178.499469 kcal Electronic energy + Delta-G solvation = -19084.793684 eV Core-core repulsion = 15452.565841 eV Total energy + Delta-G solvation = -3632.227843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.14486 -50.11116 -41.75928 -39.64878 -37.86082 -35.94847 -33.91602 -32.63674 -31.59361 -29.48385 -26.33973 -24.62245 -23.94682 -22.29714 -22.02179 -19.74368 -19.06703 -18.62658 -17.82380 -17.78103 -17.58596 -17.08473 -17.06774 -16.69183 -16.42431 -16.27405 -15.75143 -15.42673 -14.81642 -14.66090 -14.07174 -14.00813 -13.73140 -13.18529 -13.14583 -13.03643 -12.85331 -12.60552 -12.19751 -12.05649 -11.77100 -11.64492 -11.40900 -11.35451 -10.77029 -10.39362 -10.00433 -8.29729 -6.34801 -0.79919 -0.25914 1.16067 1.35591 1.37844 1.39659 1.50928 2.22950 2.36267 2.63896 3.05641 3.05724 3.30251 3.57154 3.74598 3.79738 4.00780 4.01115 4.19605 4.38840 4.52815 4.60582 4.71983 4.74875 4.79012 4.89229 4.96563 5.22439 5.46618 5.47135 5.49964 5.62723 6.26065 6.48499 6.73550 7.29875 8.86856 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034760 B = 0.003162 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.333732 B = 8854.093265 C = 9633.678183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.534 4.534 8 H 0.036 0.964 9 C -0.010 4.010 10 C -0.093 4.093 11 C 0.075 3.925 12 O -0.349 6.349 13 C 0.510 3.490 14 O -0.523 6.523 15 C -0.074 4.074 16 C -0.099 4.099 17 C 0.122 3.878 18 F -0.125 7.125 19 C -0.140 4.140 20 C 0.120 3.880 21 F -0.126 7.126 22 C -0.102 4.102 23 H 0.267 0.733 24 H 0.026 0.974 25 H 0.025 0.975 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.159 0.841 31 H 0.182 0.818 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.948 -16.419 0.019 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.572 4.572 8 H 0.054 0.946 9 C -0.047 4.047 10 C -0.131 4.131 11 C 0.002 3.998 12 O -0.265 6.265 13 C 0.355 3.645 14 O -0.414 6.414 15 C -0.076 4.076 16 C -0.118 4.118 17 C 0.103 3.897 18 F -0.103 7.103 19 C -0.159 4.159 20 C 0.100 3.900 21 F -0.105 7.105 22 C -0.121 4.121 23 H 0.076 0.924 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.177 0.823 31 H 0.200 0.800 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 21.998 -16.051 0.022 27.231 hybrid contribution -0.265 0.774 -0.018 0.818 sum 21.733 -15.277 0.003 26.566 Atomic orbital electron populations 1.70061 1.08341 1.28255 1.52465 1.26014 0.95620 1.03570 0.94063 0.85664 0.79579 0.78176 0.79288 1.19098 1.21072 1.16752 1.21418 0.91787 0.93332 1.50647 0.94608 1.19454 0.94213 0.93762 0.97311 1.21334 0.90579 0.98399 1.02780 1.23301 0.95179 0.78283 1.03059 1.86514 1.22892 1.33851 1.83233 1.21188 0.81066 0.89750 0.72509 1.90846 1.60957 1.43062 1.46536 1.18470 0.92996 0.89508 1.06597 1.21311 0.94224 0.97766 0.98533 1.16887 0.77776 0.92528 1.02521 1.91582 1.29063 1.95948 1.93738 1.21522 0.91365 1.01576 1.01457 1.17052 0.87557 0.83073 1.02281 1.91588 1.71816 1.53374 1.93687 1.21635 1.02712 0.89942 0.97811 0.92421 0.95524 0.95619 0.91657 0.91686 0.90636 0.90553 0.82297 0.80016 0.81830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 2 C 0.00 0.25 5.47 84.66 0.46 0.71 16 3 Si 0.95 43.43 27.47 68.60 1.88 45.32 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 7 C -0.53 -30.22 9.66 25.60 0.25 -29.98 16 8 H 0.04 2.22 7.99 -2.91 -0.02 2.20 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.32 16 10 C -0.09 -3.45 5.53 30.59 0.17 -3.28 16 11 C 0.07 2.32 5.47 71.98 0.39 2.71 16 12 O -0.35 -9.84 9.47 -56.18 -0.53 -10.37 16 13 C 0.51 13.36 7.90 70.33 0.56 13.92 16 14 O -0.52 -16.14 16.13 19.92 0.32 -15.81 16 15 C -0.07 -1.46 5.87 -20.11 -0.12 -1.58 16 16 C -0.10 -1.67 9.57 22.59 0.22 -1.45 16 17 C 0.12 1.71 7.29 22.33 0.16 1.87 16 18 F -0.12 -1.83 17.26 44.97 0.78 -1.05 16 19 C -0.14 -1.61 10.00 22.41 0.22 -1.39 16 20 C 0.12 1.74 7.29 22.33 0.16 1.90 16 21 F -0.13 -2.01 17.26 44.97 0.78 -1.23 16 22 C -0.10 -1.73 9.59 22.59 0.22 -1.51 16 23 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 24 H 0.03 1.16 7.20 -2.38 -0.02 1.14 16 25 H 0.03 1.10 7.57 -2.39 -0.02 1.08 16 26 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.16 2.63 7.65 -2.91 -0.02 2.61 16 31 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 32 H 0.16 2.71 7.61 -2.91 -0.02 2.69 16 Total: -1.00 -65.78 296.94 7.43 -58.35 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: 1.09 Total: 2.14 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 2.81 Total: -18.41 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.30 Total: -58.93 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.21 Total: -26.18 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 1.55 Total: -2.29 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.32 kcal Total: -65.78 7.43 -58.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958630.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.145 kcal (2) G-P(sol) polarization free energy of solvation -65.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds