Wall clock time and date at job start Mon Mar 30 2020 01:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99885 * 2 1 4 4 H 1.48503 * 109.47314 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47489 * 300.00273 * 3 2 1 6 6 H 1.48503 * 109.46552 * 60.00354 * 3 2 1 7 7 C 1.37873 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99990 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00199 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47154 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47181 * 180.02562 * 11 10 9 13 13 O 1.21290 * 120.00249 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00190 * 180.02562 * 12 11 10 15 15 C 1.40024 * 120.00246 * 185.27481 * 14 12 11 16 16 C 1.38867 * 120.03385 * 213.27859 * 15 14 12 17 17 C 1.38127 * 119.99306 * 180.02562 * 16 15 14 18 18 C 1.38426 * 120.07470 * 0.02562 * 17 16 15 19 19 F 1.35099 * 119.96476 * 180.27300 * 18 17 16 20 20 C 1.38670 * 120.06883 * 0.02562 * 18 17 16 21 21 F 1.35097 * 120.00013 * 180.02562 * 20 18 17 22 22 C 1.38323 * 119.99730 * 359.97438 * 20 18 17 23 23 H 0.97000 * 119.99803 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46963 * 60.00111 * 9 7 2 25 25 H 1.08997 * 109.46977 * 300.00472 * 9 7 2 26 26 H 1.00904 * 111.00038 * 56.04688 * 10 9 7 27 27 H 1.08998 * 109.46969 * 60.00078 * 11 10 9 28 28 H 1.08998 * 109.47297 * 300.00523 * 11 10 9 29 29 H 0.97005 * 119.99505 * 5.27855 * 14 12 11 30 30 H 1.07993 * 120.00004 * 0.02562 * 16 15 14 31 31 H 1.08003 * 119.96074 * 180.02562 * 17 16 15 32 32 H 1.07999 * 120.02824 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5055 -4.9070 0.0001 12 6 2.5150 -6.0259 0.0007 13 8 3.7011 -5.7725 0.0011 14 7 2.0999 -7.3082 0.0008 15 6 3.0329 -8.3462 0.1128 16 6 2.8099 -9.5542 -0.5347 17 6 3.7306 -10.5778 -0.4232 18 6 4.8758 -10.4012 0.3341 19 9 5.7776 -11.4019 0.4372 20 6 5.1009 -9.1964 0.9828 21 9 6.2193 -9.0254 1.7211 22 6 4.1808 -8.1694 0.8731 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8406 -3.5486 0.7809 27 1 0.8803 -4.9817 -0.8897 28 1 0.8808 -4.9812 0.8902 29 1 1.1546 -7.5119 -0.0768 30 1 1.9166 -9.6933 -1.1255 31 1 3.5568 -11.5169 -0.9274 32 1 4.3554 -7.2311 1.3785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916569564.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:45 Heat of formation + Delta-G solvation = -94.244223 kcal Electronic energy + Delta-G solvation = -19274.336401 eV Core-core repulsion = 15678.054891 eV Total energy + Delta-G solvation = -3596.281510 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.61425 -48.68794 -40.63956 -38.47745 -35.17409 -34.69191 -32.46685 -31.14237 -29.87515 -27.87857 -25.12994 -23.75867 -22.73457 -21.52695 -20.61208 -18.58861 -17.91477 -17.61042 -16.88362 -16.46375 -16.22233 -15.96792 -15.56145 -15.10369 -14.70822 -14.64503 -14.44913 -14.03944 -13.72303 -13.48518 -13.20850 -12.83136 -12.53078 -12.36797 -11.74882 -11.59617 -11.38534 -10.80889 -10.73927 -10.47815 -10.08766 -9.83571 -9.28360 -9.21062 -8.54986 -8.38642 -7.47205 -6.09788 -4.11436 0.59865 0.73314 2.50481 2.73862 3.17964 3.29296 3.36756 3.43225 3.60447 4.10579 4.26837 4.39856 4.58938 4.71616 4.88804 5.08123 5.17779 5.27299 5.49909 5.59598 5.61790 5.63668 5.66950 5.83664 6.11161 6.56452 7.00468 7.16057 7.26876 7.69729 8.00525 8.06391 8.23760 8.46971 8.97925 9.54061 11.01456 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042142 B = 0.003063 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.256899 B = 9140.656633 C = 9676.194210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.195 3.805 10 N -0.675 5.675 11 C 0.044 3.956 12 C 0.512 3.488 13 O -0.497 6.497 14 N -0.680 5.680 15 C 0.181 3.819 16 C -0.133 4.133 17 C -0.103 4.103 18 C 0.041 3.959 19 F -0.132 7.132 20 C 0.092 3.908 21 F -0.126 7.126 22 C -0.135 4.135 23 H 0.262 0.738 24 H 0.031 0.969 25 H -0.011 1.011 26 H 0.340 0.660 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.416 0.584 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.965 -22.239 0.640 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.307 5.307 11 C -0.089 4.089 12 C 0.301 3.699 13 O -0.368 6.368 14 N -0.328 5.328 15 C 0.085 3.915 16 C -0.153 4.153 17 C -0.123 4.123 18 C 0.020 3.980 19 F -0.111 7.111 20 C 0.072 3.928 21 F -0.104 7.104 22 C -0.157 4.157 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.007 0.993 26 H 0.158 0.842 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.252 0.748 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.804 -21.821 -0.001 22.000 hybrid contribution -0.125 0.615 0.951 1.139 sum 2.679 -21.206 0.950 21.395 Atomic orbital electron populations 1.69962 1.06091 1.26840 1.50937 1.24980 0.94910 0.99465 0.95179 0.86391 0.80175 0.83065 0.77521 1.19529 1.20936 1.21052 1.21199 0.93773 0.89956 1.50382 0.91653 1.19625 0.90427 0.87088 0.95997 1.60477 1.20568 0.99330 1.50336 1.21800 0.94297 0.90137 1.02662 1.21447 0.91054 0.82884 0.74558 1.90729 1.17682 1.83118 1.45309 1.43796 1.10009 1.04908 1.74043 1.17480 0.90943 0.88525 0.94549 1.20834 1.01357 0.92329 1.00827 1.20819 0.92056 1.00701 0.98690 1.17623 0.90975 0.85439 1.03946 1.91515 1.65919 1.58666 1.94962 1.17441 0.85744 0.93688 0.95976 1.91543 1.48862 1.95720 1.74268 1.21081 0.94108 0.99783 1.00695 0.92888 0.95117 0.99278 0.84195 0.88222 0.92665 0.74765 0.83802 0.83327 0.82397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.43 9.32 -34.44 -0.32 -14.75 16 8 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 9 C 0.19 4.89 5.44 -4.98 -0.03 4.86 16 10 N -0.67 -14.18 6.12 -116.34 -0.71 -14.89 16 11 C 0.04 0.67 6.17 -4.97 -0.03 0.64 16 12 C 0.51 7.31 7.61 -10.99 -0.08 7.23 16 13 O -0.50 -9.06 13.89 5.55 0.08 -8.98 16 14 N -0.68 -6.75 5.34 -9.85 -0.05 -6.81 16 15 C 0.18 1.89 6.28 -83.67 -0.53 1.37 16 16 C -0.13 -1.02 9.96 -39.39 -0.39 -1.42 16 17 C -0.10 -0.83 10.02 -39.55 -0.40 -1.22 16 18 C 0.04 0.44 7.30 -39.35 -0.29 0.16 16 19 F -0.13 -1.53 17.18 2.25 0.04 -1.49 16 20 C 0.09 1.15 7.30 -39.39 -0.29 0.86 16 21 F -0.13 -1.72 17.18 2.25 0.04 -1.68 16 22 C -0.14 -1.69 8.63 -39.34 -0.34 -2.03 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 25 H -0.01 -0.27 8.14 -51.93 -0.42 -0.70 16 26 H 0.34 7.18 8.42 -39.29 -0.33 6.85 16 27 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.42 2.54 8.82 -40.82 -0.36 2.18 16 30 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 32 H 0.16 2.23 6.42 -52.49 -0.34 1.90 16 LS Contribution 295.80 15.07 4.46 4.46 Total: -1.00 -32.67 295.80 -6.33 -39.00 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -3.11 Total: 2.15 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.79 Total: -2.82 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.03 Total: -47.18 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.08 Total: -8.98 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.08 Total: -3.17 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.67 -6.33 -39.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916569564.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.243 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds