Wall clock time and date at job start Mon Mar 30 2020 01:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99885 * 2 1 4 4 H 1.48503 * 109.47314 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47489 * 300.00273 * 3 2 1 6 6 H 1.48503 * 109.46552 * 60.00354 * 3 2 1 7 7 C 1.37873 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99990 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00199 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47154 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47181 * 180.02562 * 11 10 9 13 13 O 1.21290 * 120.00249 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00190 * 180.02562 * 12 11 10 15 15 C 1.40024 * 120.00246 * 185.27481 * 14 12 11 16 16 C 1.38867 * 120.03385 * 213.27859 * 15 14 12 17 17 C 1.38127 * 119.99306 * 180.02562 * 16 15 14 18 18 C 1.38426 * 120.07470 * 0.02562 * 17 16 15 19 19 F 1.35099 * 119.96476 * 180.27300 * 18 17 16 20 20 C 1.38670 * 120.06883 * 0.02562 * 18 17 16 21 21 F 1.35097 * 120.00013 * 180.02562 * 20 18 17 22 22 C 1.38323 * 119.99730 * 359.97438 * 20 18 17 23 23 H 0.97000 * 119.99803 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46963 * 60.00111 * 9 7 2 25 25 H 1.08997 * 109.46977 * 300.00472 * 9 7 2 26 26 H 1.00904 * 111.00038 * 56.04688 * 10 9 7 27 27 H 1.08998 * 109.46969 * 60.00078 * 11 10 9 28 28 H 1.08998 * 109.47297 * 300.00523 * 11 10 9 29 29 H 0.97005 * 119.99505 * 5.27855 * 14 12 11 30 30 H 1.07993 * 120.00004 * 0.02562 * 16 15 14 31 31 H 1.08003 * 119.96074 * 180.02562 * 17 16 15 32 32 H 1.07999 * 120.02824 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5055 -4.9070 0.0001 12 6 2.5150 -6.0259 0.0007 13 8 3.7011 -5.7725 0.0011 14 7 2.0999 -7.3082 0.0008 15 6 3.0329 -8.3462 0.1128 16 6 2.8099 -9.5542 -0.5347 17 6 3.7306 -10.5778 -0.4232 18 6 4.8758 -10.4012 0.3341 19 9 5.7776 -11.4019 0.4372 20 6 5.1009 -9.1964 0.9828 21 9 6.2193 -9.0254 1.7211 22 6 4.1808 -8.1694 0.8731 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8406 -3.5486 0.7809 27 1 0.8803 -4.9817 -0.8897 28 1 0.8808 -4.9812 0.8902 29 1 1.1546 -7.5119 -0.0768 30 1 1.9166 -9.6933 -1.1255 31 1 3.5568 -11.5169 -0.9274 32 1 4.3554 -7.2311 1.3785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916569564.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:45 Heat of formation + Delta-G solvation = -117.953585 kcal Electronic energy + Delta-G solvation = -19275.364516 eV Core-core repulsion = 15678.054891 eV Total energy + Delta-G solvation = -3597.309625 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.53583 -49.61144 -41.63967 -39.45115 -36.81566 -35.74342 -34.47853 -31.94594 -30.96842 -29.43321 -26.76541 -24.65206 -23.85061 -23.19492 -21.68999 -19.53668 -18.97223 -18.61317 -18.35139 -17.65404 -17.32537 -17.08773 -16.72917 -16.53789 -16.04496 -15.75664 -15.55746 -15.07764 -14.93114 -14.89052 -14.32970 -14.20242 -13.74915 -13.44040 -13.30069 -13.07339 -12.67562 -12.64267 -12.51431 -12.08493 -11.47049 -11.36460 -10.94054 -10.66828 -10.08842 -9.26252 -9.14720 -8.24124 -6.33561 -0.23525 -0.05354 1.40935 1.42141 1.43293 1.55700 1.78598 2.37292 2.40689 2.78012 3.09959 3.23506 3.50625 3.60510 3.74547 3.90862 4.03007 4.33783 4.40697 4.45343 4.73565 4.81863 4.96030 5.00862 5.05043 5.23755 5.25746 5.59550 5.73427 5.98506 6.26995 6.38716 6.64866 6.84466 7.05636 7.36982 8.87227 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042142 B = 0.003063 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.256899 B = 9140.656633 C = 9676.194210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.057 0.943 9 C 0.211 3.789 10 N -0.687 5.687 11 C 0.043 3.957 12 C 0.519 3.481 13 O -0.544 6.544 14 N -0.656 5.656 15 C 0.168 3.832 16 C -0.106 4.106 17 C -0.087 4.087 18 C 0.034 3.966 19 F -0.139 7.139 20 C 0.065 3.935 21 F -0.143 7.143 22 C -0.154 4.154 23 H 0.266 0.734 24 H 0.014 0.986 25 H -0.026 1.026 26 H 0.337 0.663 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.437 0.563 30 H 0.189 0.811 31 H 0.188 0.812 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -23.736 -0.424 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.075 0.925 9 C 0.083 3.917 10 N -0.319 5.319 11 C -0.089 4.089 12 C 0.308 3.692 13 O -0.419 6.419 14 N -0.304 5.304 15 C 0.072 3.928 16 C -0.126 4.126 17 C -0.106 4.106 18 C 0.013 3.987 19 F -0.117 7.117 20 C 0.044 3.956 21 F -0.122 7.122 22 C -0.175 4.175 23 H 0.075 0.925 24 H 0.032 0.968 25 H -0.008 1.008 26 H 0.154 0.846 27 H 0.136 0.864 28 H 0.096 0.904 29 H 0.278 0.722 30 H 0.206 0.794 31 H 0.205 0.795 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.633 -23.376 -1.064 23.457 hybrid contribution 0.189 0.954 1.272 1.601 sum 1.822 -22.422 0.208 22.497 Atomic orbital electron populations 1.70051 1.07416 1.27997 1.51412 1.25826 0.95811 1.02972 0.94568 0.85355 0.78768 0.78696 0.77910 1.19354 1.20171 1.20128 1.21553 0.93674 0.91778 1.50771 0.92523 1.19256 0.90287 0.87844 0.94278 1.60282 1.20324 1.00824 1.50451 1.21882 0.94563 0.87892 1.04591 1.21138 0.89893 0.84024 0.74144 1.90731 1.19339 1.83999 1.47803 1.43402 1.11175 1.03329 1.72542 1.17657 0.90424 0.89592 0.95128 1.21273 1.02175 0.90213 0.98963 1.21278 0.90219 1.02123 0.96993 1.17907 0.91872 0.84609 1.04311 1.91497 1.66455 1.58724 1.95062 1.17688 0.85715 0.94851 0.97302 1.91486 1.49816 1.95934 1.74946 1.20968 0.95572 0.98978 1.01998 0.92477 0.96821 1.00832 0.84604 0.86388 0.90356 0.72187 0.79374 0.79475 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.37 13.29 21.45 0.28 -54.09 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.54 -30.71 9.32 25.60 0.24 -30.47 16 8 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 9 C 0.21 10.76 5.44 85.56 0.47 11.22 16 10 N -0.69 -29.19 6.12 -522.00 -3.19 -32.38 16 11 C 0.04 1.27 6.17 85.56 0.53 1.80 16 12 C 0.52 14.41 7.61 87.66 0.67 15.08 16 13 O -0.54 -20.24 13.89 -3.06 -0.04 -20.28 16 14 N -0.66 -11.49 5.34 -303.47 -1.62 -13.11 16 15 C 0.17 3.16 6.28 38.12 0.24 3.40 16 16 C -0.11 -1.17 9.96 22.39 0.22 -0.94 16 17 C -0.09 -1.05 10.02 22.29 0.22 -0.83 16 18 C 0.03 0.68 7.30 22.42 0.16 0.85 16 19 F -0.14 -3.07 17.18 44.97 0.77 -2.30 16 20 C 0.07 1.65 7.30 22.39 0.16 1.81 16 21 F -0.14 -4.18 17.18 44.97 0.77 -3.41 16 22 C -0.15 -3.92 8.63 22.43 0.19 -3.73 16 23 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 24 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 25 H -0.03 -1.38 8.14 -2.39 -0.02 -1.40 16 26 H 0.34 14.60 8.42 -89.69 -0.76 13.85 16 27 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.44 3.72 8.82 -92.70 -0.82 2.90 16 30 H 0.19 0.48 8.06 -2.91 -0.02 0.45 16 31 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 32 H 0.13 4.03 6.42 -2.91 -0.02 4.01 16 Total: -1.00 -73.39 295.80 2.18 -71.21 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -0.39 Total: 9.01 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 3.57 Total: -0.96 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -4.53 Total: -99.58 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.04 Total: -20.28 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 1.55 Total: -5.71 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -73.39 2.18 -71.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916569564.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.745 kcal (2) G-P(sol) polarization free energy of solvation -73.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds