Wall clock time and date at job start Mon Mar 30 2020 01:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00050 * 2 1 4 4 H 1.48505 * 109.46604 * 239.99493 * 3 2 1 5 5 H 1.48496 * 109.47248 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46949 * 119.99831 * 3 2 1 7 7 C 1.37871 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00255 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00120 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47274 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00131 * 180.02562 * 10 9 7 12 12 O 1.21581 * 119.99833 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00000 * 179.97438 * 11 10 9 14 14 C 1.39943 * 120.00134 * 184.61561 * 13 11 10 15 15 C 1.38866 * 120.07180 * 144.90987 * 14 13 11 16 16 C 1.38117 * 119.93055 * 180.30502 * 15 14 13 17 17 C 1.38277 * 120.06719 * 359.46006 * 16 15 14 18 18 C 1.50703 * 119.92838 * 180.25789 * 17 16 15 19 19 F 1.39900 * 109.47045 * 30.26158 * 18 17 16 20 20 F 1.39903 * 109.47184 * 150.26084 * 18 17 16 21 21 C 1.38282 * 120.14369 * 0.52019 * 17 16 15 22 22 C 1.38110 * 120.06589 * 359.76303 * 21 17 16 23 23 H 0.97004 * 119.99654 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46686 * 59.99983 * 9 7 2 25 25 H 1.09001 * 109.46697 * 300.00214 * 9 7 2 26 26 H 0.97009 * 120.00153 * 359.97438 * 10 9 7 27 27 H 0.97003 * 120.00683 * 4.62263 * 13 11 10 28 28 H 1.08005 * 120.03533 * 0.02920 * 15 14 13 29 29 H 1.07997 * 119.96553 * 179.70350 * 16 15 14 30 30 H 1.09002 * 109.47491 * 270.25862 * 18 17 16 31 31 H 1.07995 * 119.96529 * 179.73599 * 21 17 16 32 32 H 1.08001 * 120.03320 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7536 -4.8834 0.0015 12 8 0.5583 -5.1055 0.0006 13 7 2.6294 -5.9077 0.0021 14 6 2.1660 -7.2246 -0.0958 15 6 2.9042 -8.1720 -0.7928 16 6 2.4409 -9.4694 -0.8928 17 6 1.2490 -9.8278 -0.2904 18 6 0.7495 -11.2457 -0.3967 19 9 1.8390 -12.1180 -0.4924 20 9 -0.0024 -11.5616 0.7400 21 6 0.5118 -8.8869 0.4048 22 6 0.9667 -7.5866 0.5035 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6239 -2.5566 0.8903 26 1 3.1566 -3.4355 0.0021 27 1 3.5810 -5.7324 0.0704 28 1 3.8373 -7.8937 -1.2599 29 1 3.0122 -10.2055 -1.4388 30 1 0.1250 -11.3454 -1.2845 31 1 -0.4208 -9.1690 0.8705 32 1 0.3903 -6.8520 1.0462 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933096711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:35 Heat of formation + Delta-G solvation = -108.641309 kcal Electronic energy + Delta-G solvation = -19358.608114 eV Core-core repulsion = 15761.702299 eV Total energy + Delta-G solvation = -3596.905814 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.13926 -47.15838 -40.33304 -38.52710 -34.88566 -34.22464 -32.47088 -31.02217 -30.60972 -27.37252 -25.61270 -23.16163 -22.80305 -21.51423 -20.34018 -18.38147 -17.88630 -17.63451 -17.25270 -17.13585 -16.05851 -15.25074 -14.95670 -14.67382 -14.44777 -14.18605 -13.96597 -13.67928 -13.41504 -13.26782 -13.17687 -12.92590 -12.52575 -12.05005 -12.01438 -11.34187 -11.16476 -11.04018 -10.93730 -10.37042 -10.21951 -9.56174 -9.47642 -8.98768 -8.81930 -8.27002 -7.85681 -6.22169 -4.29722 1.07419 1.34128 3.01886 3.21740 3.27198 3.28758 3.42132 3.62078 3.84370 4.07726 4.26774 4.44290 4.76649 4.80045 4.90879 4.94469 5.14151 5.29520 5.50504 5.60799 5.93117 6.07177 6.30401 6.36851 6.54652 6.92861 7.03848 7.30364 7.41655 7.44855 7.73567 7.91904 8.59424 8.75246 9.07975 9.37229 10.87902 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.061195 B = 0.003004 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.441038 B = 9317.626361 C = 9671.548438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.720 5.720 11 C 0.690 3.310 12 O -0.581 6.581 13 N -0.696 5.696 14 C 0.200 3.800 15 C -0.158 4.158 16 C -0.068 4.068 17 C -0.202 4.202 18 C 0.318 3.682 19 F -0.204 7.204 20 F -0.202 7.202 21 C -0.067 4.067 22 C -0.124 4.124 23 H 0.267 0.733 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.389 0.611 27 H 0.405 0.595 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.866 -19.071 -1.456 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.371 5.371 11 C 0.390 3.610 12 O -0.458 6.458 13 N -0.344 5.344 14 C 0.103 3.897 15 C -0.179 4.179 16 C -0.086 4.086 17 C -0.204 4.204 18 C 0.264 3.736 19 F -0.185 7.185 20 F -0.183 7.183 21 C -0.085 4.085 22 C -0.144 4.144 23 H 0.077 0.923 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.222 0.778 27 H 0.240 0.760 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.136 0.864 31 H 0.150 0.850 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.577 -18.988 -1.438 19.585 hybrid contribution 1.405 1.084 0.056 1.775 sum 5.982 -17.905 -1.382 18.928 Atomic orbital electron populations 1.69962 1.06109 1.27547 1.48531 1.24939 0.94934 0.99447 0.94607 0.86448 0.79402 0.82202 0.78700 1.20052 1.21013 1.20040 1.21158 0.93262 0.90316 1.53698 0.91910 1.19074 0.87694 0.80834 0.97904 1.45802 1.11226 1.04092 1.75994 1.16165 0.85116 0.81072 0.78633 1.90881 1.13874 1.83623 1.57466 1.42893 1.10188 1.03647 1.77637 1.17713 0.94640 0.83296 0.94049 1.20840 1.02124 0.93277 1.01674 1.20586 0.94329 0.95849 0.97875 1.20271 0.99001 0.94584 1.06515 1.20269 0.80914 0.85140 0.87276 1.92975 1.57159 1.71760 1.96591 1.92987 1.76631 1.93772 1.54916 1.20819 0.99172 0.92134 0.96421 1.21445 0.96752 0.96127 1.00101 0.92287 0.95431 0.95418 0.77822 0.75974 0.85218 0.85132 0.86395 0.85048 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 13.29 55.43 0.74 -24.84 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.55 -14.42 9.28 -34.44 -0.32 -14.74 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.27 6.84 5.43 -5.19 -0.03 6.81 16 10 N -0.72 -14.53 5.55 -66.42 -0.37 -14.90 16 11 C 0.69 13.46 8.41 -86.93 -0.73 12.73 16 12 O -0.58 -13.54 13.78 5.29 0.07 -13.47 16 13 N -0.70 -10.05 5.34 -14.23 -0.08 -10.13 16 14 C 0.20 2.83 6.30 -83.69 -0.53 2.30 16 15 C -0.16 -1.79 9.97 -39.39 -0.39 -2.18 16 16 C -0.07 -0.71 9.39 -39.61 -0.37 -1.09 16 17 C -0.20 -2.26 5.74 -104.59 -0.60 -2.86 16 18 C 0.32 2.99 5.65 36.01 0.20 3.19 16 19 F -0.20 -2.11 16.48 2.25 0.04 -2.07 16 20 F -0.20 -2.23 16.48 2.25 0.04 -2.19 16 21 C -0.07 -0.84 9.39 -39.61 -0.37 -1.22 16 22 C -0.12 -1.87 8.70 -39.39 -0.34 -2.21 16 23 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.39 6.57 8.34 -40.82 -0.34 6.23 16 27 H 0.41 4.36 8.84 -40.82 -0.36 4.00 16 28 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 29 H 0.13 1.09 7.60 -52.49 -0.40 0.69 16 30 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.13 1.47 7.60 -52.49 -0.40 1.07 16 32 H 0.15 2.61 6.22 -52.49 -0.33 2.28 16 LS Contribution 292.47 15.07 4.41 4.41 Total: -1.00 -31.81 292.47 -6.80 -38.61 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -3.05 Total: 6.79 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -3.58 Total: 2.40 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.29 Total: -49.87 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.07 Total: -13.47 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.07 Total: -4.26 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.81 -6.80 -38.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933096711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.031 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds