Wall clock time and date at job start Mon Mar 30 2020 01:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00050 * 2 1 4 4 H 1.48505 * 109.46604 * 239.99493 * 3 2 1 5 5 H 1.48496 * 109.47248 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46949 * 119.99831 * 3 2 1 7 7 C 1.37871 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00255 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00120 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47274 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00131 * 180.02562 * 10 9 7 12 12 O 1.21581 * 119.99833 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00000 * 179.97438 * 11 10 9 14 14 C 1.39943 * 120.00134 * 184.61561 * 13 11 10 15 15 C 1.38866 * 120.07180 * 144.90987 * 14 13 11 16 16 C 1.38117 * 119.93055 * 180.30502 * 15 14 13 17 17 C 1.38277 * 120.06719 * 359.46006 * 16 15 14 18 18 C 1.50703 * 119.92838 * 180.25789 * 17 16 15 19 19 F 1.39900 * 109.47045 * 30.26158 * 18 17 16 20 20 F 1.39903 * 109.47184 * 150.26084 * 18 17 16 21 21 C 1.38282 * 120.14369 * 0.52019 * 17 16 15 22 22 C 1.38110 * 120.06589 * 359.76303 * 21 17 16 23 23 H 0.97004 * 119.99654 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46686 * 59.99983 * 9 7 2 25 25 H 1.09001 * 109.46697 * 300.00214 * 9 7 2 26 26 H 0.97009 * 120.00153 * 359.97438 * 10 9 7 27 27 H 0.97003 * 120.00683 * 4.62263 * 13 11 10 28 28 H 1.08005 * 120.03533 * 0.02920 * 15 14 13 29 29 H 1.07997 * 119.96553 * 179.70350 * 16 15 14 30 30 H 1.09002 * 109.47491 * 270.25862 * 18 17 16 31 31 H 1.07995 * 119.96529 * 179.73599 * 21 17 16 32 32 H 1.08001 * 120.03320 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7536 -4.8834 0.0015 12 8 0.5583 -5.1055 0.0006 13 7 2.6294 -5.9077 0.0021 14 6 2.1660 -7.2246 -0.0958 15 6 2.9042 -8.1720 -0.7928 16 6 2.4409 -9.4694 -0.8928 17 6 1.2490 -9.8278 -0.2904 18 6 0.7495 -11.2457 -0.3967 19 9 1.8390 -12.1180 -0.4924 20 9 -0.0024 -11.5616 0.7400 21 6 0.5118 -8.8869 0.4048 22 6 0.9667 -7.5866 0.5035 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6239 -2.5566 0.8903 26 1 3.1566 -3.4355 0.0021 27 1 3.5810 -5.7324 0.0704 28 1 3.8373 -7.8937 -1.2599 29 1 3.0122 -10.2055 -1.4388 30 1 0.1250 -11.3454 -1.2845 31 1 -0.4208 -9.1690 0.8705 32 1 0.3903 -6.8520 1.0462 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933096711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:35 Heat of formation + Delta-G solvation = -130.412318 kcal Electronic energy + Delta-G solvation = -19359.552175 eV Core-core repulsion = 15761.702299 eV Total energy + Delta-G solvation = -3597.849876 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.92289 -47.95000 -41.66703 -39.76293 -36.40706 -35.86778 -34.40745 -31.99218 -31.74549 -29.22742 -26.67926 -24.79256 -24.00561 -22.71659 -21.80846 -19.93636 -18.97608 -18.39812 -18.24776 -18.08270 -17.88710 -16.78341 -16.65278 -16.00011 -15.61150 -15.54903 -14.98906 -14.80691 -14.54502 -14.28059 -14.24255 -14.08841 -14.01661 -13.81259 -13.40293 -12.93014 -12.69066 -12.35364 -12.23031 -12.03483 -11.51627 -11.44715 -11.12760 -10.80596 -9.97415 -9.97012 -9.15480 -8.29348 -6.46003 0.06795 0.37080 1.43598 1.47942 1.55500 1.66624 2.03324 2.38589 2.65516 2.88876 3.06045 3.31291 3.38563 3.62061 3.97719 4.04111 4.09156 4.36202 4.50946 4.61082 4.94621 5.04895 5.09843 5.24010 5.29644 5.38514 5.42189 5.48288 5.62899 5.81539 5.94607 6.13915 6.64646 7.12865 7.24306 7.55017 8.82609 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.061195 B = 0.003004 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.441038 B = 9317.626361 C = 9671.548438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.285 3.715 10 N -0.714 5.714 11 C 0.690 3.310 12 O -0.625 6.625 13 N -0.674 5.674 14 C 0.171 3.829 15 C -0.143 4.143 16 C -0.063 4.063 17 C -0.197 4.197 18 C 0.318 3.682 19 F -0.206 7.206 20 F -0.213 7.213 21 C -0.074 4.074 22 C -0.150 4.150 23 H 0.269 0.731 24 H -0.011 1.011 25 H -0.011 1.011 26 H 0.408 0.592 27 H 0.425 0.575 28 H 0.162 0.838 29 H 0.163 0.837 30 H 0.158 0.842 31 H 0.138 0.862 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.529 -20.153 -2.444 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.162 3.838 10 N -0.367 5.367 11 C 0.391 3.609 12 O -0.505 6.505 13 N -0.323 5.323 14 C 0.076 3.924 15 C -0.164 4.164 16 C -0.081 4.081 17 C -0.199 4.199 18 C 0.265 3.735 19 F -0.188 7.188 20 F -0.194 7.194 21 C -0.092 4.092 22 C -0.171 4.171 23 H 0.078 0.922 24 H 0.007 0.993 25 H 0.007 0.993 26 H 0.244 0.756 27 H 0.264 0.736 28 H 0.180 0.820 29 H 0.180 0.820 30 H 0.175 0.825 31 H 0.155 0.845 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.321 -20.135 -2.422 21.561 hybrid contribution 0.552 1.239 0.364 1.405 sum 7.873 -18.895 -2.057 20.573 Atomic orbital electron populations 1.70130 1.08256 1.28686 1.49785 1.26044 0.95763 1.03834 0.93840 0.85202 0.77893 0.76599 0.79490 1.18632 1.21191 1.18682 1.21567 0.94391 0.90379 1.53142 0.89670 1.18476 0.88029 0.83027 0.94316 1.45331 1.11324 1.03427 1.76623 1.16271 0.85061 0.81562 0.78030 1.90862 1.16229 1.84339 1.59093 1.42470 1.10406 1.02789 1.76623 1.17950 0.95273 0.83332 0.95881 1.21148 1.02516 0.92680 1.00015 1.20996 0.93944 0.96095 0.97097 1.20558 0.98866 0.95350 1.05138 1.20568 0.81097 0.83714 0.88141 1.92972 1.57495 1.71687 1.96599 1.92970 1.76864 1.93746 1.55835 1.20875 0.99841 0.91576 0.96956 1.21294 0.97626 0.96668 1.01485 0.92203 0.99277 0.99280 0.75613 0.73599 0.82028 0.81982 0.82539 0.84450 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.41 13.29 21.44 0.28 -55.13 16 2 C 0.01 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.99 41.49 29.54 68.60 2.03 43.52 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 5 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.56 -29.60 9.28 25.60 0.24 -29.37 16 8 H 0.09 4.04 7.60 -2.91 -0.02 4.02 16 9 C 0.28 15.33 5.43 85.64 0.46 15.80 16 10 N -0.71 -29.39 5.55 -482.30 -2.68 -32.07 16 11 C 0.69 27.75 8.41 179.06 1.51 29.25 16 12 O -0.62 -30.94 13.78 -3.97 -0.05 -30.99 16 13 N -0.67 -19.12 5.34 -317.19 -1.69 -20.81 16 14 C 0.17 4.73 6.30 38.15 0.24 4.97 16 15 C -0.14 -2.81 9.97 22.39 0.22 -2.59 16 16 C -0.06 -1.11 9.39 22.25 0.21 -0.90 16 17 C -0.20 -3.98 5.74 -19.84 -0.11 -4.09 16 18 C 0.32 5.06 5.65 71.24 0.40 5.46 16 19 F -0.21 -3.59 16.48 44.97 0.74 -2.85 16 20 F -0.21 -4.32 16.48 44.97 0.74 -3.57 16 21 C -0.07 -1.86 9.39 22.25 0.21 -1.65 16 22 C -0.15 -4.69 8.70 22.39 0.19 -4.50 16 23 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 24 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 25 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 26 H 0.41 13.46 8.34 -92.70 -0.77 12.69 16 27 H 0.43 8.36 8.84 -92.71 -0.82 7.54 16 28 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.16 1.90 7.60 -2.91 -0.02 1.88 16 30 H 0.16 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.14 3.15 7.60 -2.91 -0.02 3.12 16 32 H 0.11 4.38 6.22 -2.91 -0.02 4.36 16 Total: -1.00 -72.59 292.47 2.99 -69.60 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -0.41 Total: 19.19 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 4.03 Total: 13.13 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -4.09 Total: -108.02 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.05 Total: -30.99 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 1.48 Total: -6.42 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -72.59 2.99 -69.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933096711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.816 kcal (2) G-P(sol) polarization free energy of solvation -72.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds